Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

24256078 .. 24260108

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG161400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGATTAATGCACAAAATACAACAATCCCAGTGAACGTTGGTGTTGTTCTTGACTTTGATTCAGGGGCCGGGAAGACTGCAAAGGTGTACTTGAGTTGCATAGAAATGGCCCTCTCAGATATTTATGCATCTCATCCTTACTTCAAGACGAGGATAGTATTGAACACAAGGAACTCCAAACAAACTGTTGTTGGTGCAGCTGCGGCAGCTCTAGATCTGATAAAGAATGCAGAAGTTCTAGCAATATTAGGGCCTGAAACATCAACGCAGGCGAGCTTCATTGTTAATTTGGGAGACGAAGCTCATGTGCCCATTTTATCATTTTCTGCATCAGCACCTTATCTTACTTCCCTCCGGAGCCCTTACTTTTTCAGAATTACTCAAACCGACTCATACCAAGTGAAAGCCATTAGTAGCATTGTTCAAAATTTTGGATGGAGACAAGTTGTACCAATCTACGTGGACAATATGTATGGGGAGGGAATCATACCTTTTCTCATTGATGCCTTGCAAGATGTTGATGCTCATGTCCCTTACCGTAGTGTCATTTCCCCATCAGCAACTGGTGACCAGATTATAAAAGAGCTTTACAAATTAATGACAATGCAAACTAGAGTCTTCATCGTGCATATGAATACCAATCTTTGCTCTAAGCTGTTTTCCAAGGCAAAAGAGATAGGAATGATGAGTAAAGGATATGTTTGGATCTTGACCGATGGGATTTCTAATCGTTTAAATTCGATGAATTCTTCAGTCATAGCTTCCATGGAAGGTGTGTTAGGTATCCAAACATTCATCCCGAGAACAACAGAACTTGAAAAATTAGAGCTCCGGTGGAAAGGACAATTCCAACAAGACAACCCAACCATTATAGATGTTCAATTGGATGTTTATGCACTTCAGGCTTATGATGCTGCTTTTGCATTAGCCATGTCAATTGAAAATGTTGGGATCAGTACAAGCTCTGAAATCCACAAGGATACTTCCTTCAACTCAACTGACCTTGATACTTATAAGGTCTCTAAAAATGGTCCTAAACTTGGTGAAGCATTATCAATTACTAGATTTAAAGGCATAGCTGGAGACTTCAAGCTTGTAGAAGGGCAACTTCAGTCATCAACTTTTATAATTGTTAATATAAAAAGTGAGGGAGAAAAACCAGTTGCATTTTGGACTCCGGAAAATCAAATGGTGAAACAGTTGAATGACTCAACAAACACAAGCATCCTTTCAACTAATTCCATGAGAAATCTTGGACCAATTAAATGGCCTGGAAATTCTCTCTCTGTTCCAAGGGGATGGGAGATACCAACAAATGGCAAGAAGTTGATAATAGGAGTTCCTGTCAAGATTGATTTTACTGAATTTGTTAAGATCTCGAAAGATCCAAAGACCGGCACAATGGATGTCACTGGGTTCTGTATTGATGTCTTTCATGCTGCATTGAAAGTATTACCTTATGCTCTTCCTTATGAGTTCACTCCCTTCTCAAACCCTGATGGCACCAGCGCTGGCAATTATAATGATTTGGTCTATCAAGTATATCTTGGGAAGTTTGATGCCGTCGTCGGAGATACAACGATTAGAGCAAATAGGTCCTTGTATGTGGACTTTACAATGCCATACACAGAATCTGGTGTTGTAATGGTGGTGCCAATCATAGACAGAACGAGCAAGAATGCATGGGTTTTCTTAAAGCCATTGACTTGGGACCTGTGGCTTACAACTTTTTGTTTCTTCCTCTTTACTGGTTTTGTTGTTTGGGTTCTTGAACATCGAATTAATGAAGATTTTCGTGGTCCTCCTTCACATCAATTTGGGACTAGTGTCTGGTTTTCCTTCTCAACGATGGTTTTCTCACACAAAGAGAATGTGATTAGCAACTTGGCTAGATTCGTGATGATTATATGGGTATTCGTTGTCCTAATATTGACACAAAGTTATACAGCTAATCTAGCATCGCTATTAACTGTCCAACAACTTAAGCCAACCGTTGTTGATATTAAGGATCTATTAAGGAAGGGGGATAATGTCGGGTACGCTAAGAATGCTTATGTTTATGGACTCTTGAAAGAAGTAGGTTTCAAAGATTCAAATCTTAAAGATTTTAGAACTATGGAAGCACTTGATGAAGCTCTTTCAAAAGGGAGTGCAAATGGTGGTATTGCTGCTTTTGTTGATGAAACCCCAACTATGAAGCTTTTTCTTGCAAAGTATTGTTCTAAATATACCATGATTGGACCCATCTTTAAAACTGAAGGGTTTGGTTTTGTAAGTTCCTTCTCCTCTCAGAATGTTTGTTTTATATATCATTATCCAAGGCTTAGAATTATCGATGCAAGACTACAATGTCAACACAAACAATATAGAATTCCTGATGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

795

Amino Acids

88.7

Weight (kDa)

7.15

Isoelectric Point (pI)

22.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	10 - 320	8.6e-19	Periplasmic binding protein
ANF_receptor	PF01094	33 - 381	2.3e-81	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	461 - 551	8.2e-08	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	569 - 707	2.8e-34	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	578, 1014, 1127, 1521
AasI	GACNNNNNNGTC	1 cut(s)	2349
AccB1I	GGYRCC	2 cut(s)	1502, 1651
AccB7I	CCANNNNNTGG	1 cut(s)	1316
AccIII	TCCGGA	2 cut(s)	354, 1177
AciI	CCGC	1 cut(s)	203
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	4 cut(s)	713, 959, 1379, 2016
AcsI	RAATTY	6 cut(s)	427, 736, 745, 1276, 1364, 2370
AcuI	CTGAAG	4 cut(s)	735, 884, 1094, 2277
AfaI	GTAC	4 cut(s)	89, 450, 958, 2039
AfeI	AGCGCT	1 cut(s)	1510
AfiI	CCNNNNNNNGG	3 cut(s)	1040, 1316, 1394
AflII	CTTAAG	1 cut(s)	1982
AhlI	ACTAGT	1 cut(s)	1823
AjnI	CCWGG	1 cut(s)	1270
Alw21I	GWGCWC	1 cut(s)	831
Alw26I	GTCTC	4 cut(s)	288, 433, 1024, 1077
AlwI	GGATC	4 cut(s)	713, 959, 1379, 2016
AlwNI	CAGNNNCTG	2 cut(s)	563, 1634
Ama87I	CYCGRG	1 cut(s)	799
Aor13HI	TCCGGA	2 cut(s)	354, 1177
Aor51HI	AGCGCT	1 cut(s)	1510
AoxI	GGCC	4 cut(s)	66, 108, 251, 1268
ApeKI	GCWGC	6 cut(s)	197, 200, 206, 914, 1439, 2168
ApoI	RAATTY	6 cut(s)	427, 736, 745, 1276, 1364, 2370
AseI	ATTAAT	3 cut(s)	6, 596, 1782
Asp700I	GAANNNNTTC	1 cut(s)	1791
AspLEI	GCGC	1 cut(s)	1511
AspS9I	GGNCC	9 cut(s)	66, 109, 251, 1031, 1256, 1596, 1711, 1799, 2240
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	578, 1055, 1204
AvaI	CYCGRG	1 cut(s)	799
AvaII	GGWCC	6 cut(s)	1031, 1256, 1596, 1711, 1799, 2240
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	2 cut(s)	1502, 1651
BanII	GRGCYC	2 cut(s)	362, 831
BbsI	GAAGAC	2 cut(s)	80, 610
Bbv12I	GWGCWC	1 cut(s)	831
BbvI	GCAGC	6 cut(s)	187, 209, 218, 901, 1426, 2155
BccI	CCATC	7 cut(s)	429, 562, 710, 1293, 1493, 1843, 2252
BceAI	ACGGC	1 cut(s)	1547
BciT130I	CCWGG	1 cut(s)	1272
BciVI	GTATCC	2 cut(s)	794, 973
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	4 cut(s)	288, 433, 1024, 1077
BcuI	ACTAGT	1 cut(s)	1823
BfaI	CTAG	7 cut(s)	212, 239, 612, 1062, 1824, 1890, 1955
BfoI	RGCGCY	1 cut(s)	1512
BfrI	CTTAAG	1 cut(s)	1982
BfuI	GTATCC	2 cut(s)	794, 973
BglII	AGATCT	2 cut(s)	214, 1374
BisI	GCNGC	7 cut(s)	198, 201, 204, 207, 915, 1440, 2169
BlsI	GCNGC	7 cut(s)	199, 202, 205, 208, 916, 1441, 2170
Bme1390I	CCNGG	2 cut(s)	70, 1272
Bme18I	GGWCC	6 cut(s)	1031, 1256, 1596, 1711, 1799, 2240
BmeT110I	CYCGRG	1 cut(s)	799
BmgT120I	GGNCC	9 cut(s)	66, 109, 251, 1031, 1256, 1596, 1711, 1799, 2240
BmiI	GGNNCC	6 cut(s)	67, 359, 1504, 1653, 1712, 2242
BmrFI	CCNGG	2 cut(s)	70, 1272
BmrI	ACTGGG	2 cut(s)	23, 1422
BmsI	GCATC	9 cut(s)	137, 338, 493, 511, 901, 1233, 1549, 1967, 2326
BmuI	ACTGGG	2 cut(s)	23, 1422
BoxI	GACNNNNGTC	1 cut(s)	1826
BpiI	GAAGAC	2 cut(s)	80, 610
BpmI	CTGGAG	1 cut(s)	1101
BpuEI	CTTGAG	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	2334
BsaAI	YACGTR	1 cut(s)	460
BsaBI	GATNNNNATC	1 cut(s)	2094
BsaI	GGTCTC	1 cut(s)	1024
BsaJI	CCNNGG	4 cut(s)	663, 765, 1292, 2318
BsaWI	WCCGGW	3 cut(s)	354, 831, 1177
BsaXI	ACNNNNNCTCC	2 cut(s)	1329, 1359
Bsc4I	CCNNNNNNNGG	3 cut(s)	1040, 1316, 1394
Bse118I	RCCGGY	1 cut(s)	1394
Bse1I	ACTGG	5 cut(s)	29, 568, 1160, 1417, 1753
Bse8I	GATNNNNATC	1 cut(s)	2094
BseAI	TCCGGA	2 cut(s)	354, 1177
BseBI	CCWGG	1 cut(s)	1272
BseCI	ATCGAT	1 cut(s)	2334
BseDI	CCNNGG	4 cut(s)	663, 765, 1292, 2318
BseGI	GGATG	7 cut(s)	133, 440, 795, 892, 1224, 1304, 1411
BseJI	GATNNNNATC	1 cut(s)	2094
BseLI	CCNNNNNNNGG	3 cut(s)	1040, 1316, 1394
BseMII	CTCAG	2 cut(s)	129, 2303
BseNI	ACTGG	5 cut(s)	29, 568, 1160, 1417, 1753
BseRI	GAGGAG	1 cut(s)	2275
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	6 cut(s)	187, 209, 218, 901, 1426, 2155
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	4 cut(s)	68, 110, 253, 1270
BshNI	GGYRCC	2 cut(s)	1502, 1651
BshVI	ATCGAT	1 cut(s)	2334
BsiHKAI	GWGCWC	1 cut(s)	831
BsiHKCI	CYCGRG	1 cut(s)	799
BsiSI	CCGG	5 cut(s)	69, 355, 832, 1178, 1395
BslFI	GGGAC	3 cut(s)	515, 1724, 1834
BslI	CCNNNNNNNGG	3 cut(s)	1040, 1316, 1394
BsmAI	GTCTC	4 cut(s)	288, 433, 1024, 1077
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	3 cut(s)	515, 1724, 1834
BsmI	GAATGC	3 cut(s)	232, 1684, 2053
BsnI	GGCC	4 cut(s)	68, 110, 253, 1270
Bso31I	GGTCTC	1 cut(s)	1024
BsoBI	CYCGRG	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	312, 362, 831
Bsp13I	TCCGGA	2 cut(s)	354, 1177
Bsp143I	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
Bsp19I	CCATGG	1 cut(s)	765
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	4 cut(s)	68, 110, 253, 1270
BspCNI	CTCAG	2 cut(s)	128, 2302
BspDI	ATCGAT	1 cut(s)	2334
BspEI	TCCGGA	2 cut(s)	354, 1177
BspLI	GGNNCC	6 cut(s)	67, 359, 1504, 1653, 1712, 2242
BspPI	GGATC	4 cut(s)	713, 959, 1379, 2016
BspQI	GCTCTTC	1 cut(s)	1470
BspT107I	GGYRCC	2 cut(s)	1502, 1651
BspTI	CTTAAG	1 cut(s)	1982
BspTNI	GGTCTC	1 cut(s)	1024
BsrFI	RCCGGY	1 cut(s)	1394
BsrI	ACTGG	5 cut(s)	29, 568, 1160, 1417, 1753
BssAI	RCCGGY	1 cut(s)	1394
BssECI	CCNNGG	4 cut(s)	663, 765, 1292, 2318
BssMI	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
BssT1I	CCWWGG	4 cut(s)	663, 765, 1292, 2318
Bst2UI	CCWGG	1 cut(s)	1272
Bst4CI	ACNGT	5 cut(s)	187, 539, 1200, 1972, 1993
Bst6I	CTCTTC	1 cut(s)	1470
BstAFI	CTTAAG	1 cut(s)	1982
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	270, 274, 1513
BstDEI	CTNAG	5 cut(s)	115, 651, 2043, 2289, 2324
BstDSI	CCRYGG	1 cut(s)	765
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	7 cut(s)	133, 440, 795, 892, 1224, 1304, 1411
BstH2I	RGCGCY	1 cut(s)	1512
BstHHI	GCGC	1 cut(s)	1511
BstKTI	GATC	6 cut(s)	217, 708, 954, 1377, 1387, 2011
BstMAI	GTCTC	4 cut(s)	288, 433, 1024, 1077
BstMBI	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 206, 902, 911, 920, 1955, 2048
BstNI	CCWGG	1 cut(s)	1272
BstPAI	GACNNNNGTC	1 cut(s)	1826
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	68, 1270
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	187, 209, 218, 901, 1426, 2155
BstV2I	GAAGAC	2 cut(s)	80, 610
BstX2I	RGATCY	5 cut(s)	214, 705, 1374, 1384, 2008
BstXI	CCANNNNNNTGG	3 cut(s)	1266, 1299, 1707
BstYI	RGATCY	5 cut(s)	214, 705, 1374, 1384, 2008
Bsu15I	ATCGAT	1 cut(s)	2334
BsuI	GTATCC	2 cut(s)	794, 973
BsuRI	GGCC	4 cut(s)	68, 110, 253, 1270
BsuTUI	ATCGAT	1 cut(s)	2334
BtgI	CCRYGG	1 cut(s)	765
BtgZI	GCGATG	1 cut(s)	1944
BtsCI	GGATG	7 cut(s)	133, 440, 795, 892, 1224, 1304, 1411
BtsIMutI	CAGTG	2 cut(s)	36, 1410
Cac8I	GCNNGC	3 cut(s)	270, 274, 1513
CaiI	CAGNNNCTG	2 cut(s)	563, 1634
CfoI	GCGC	1 cut(s)	1511
Cfr10I	RCCGGY	1 cut(s)	1394
Cfr13I	GGNCC	9 cut(s)	66, 109, 251, 1031, 1256, 1596, 1711, 1799, 2240
ClaI	ATCGAT	1 cut(s)	2334
Csp6I	GTAC	4 cut(s)	88, 449, 957, 2038
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	8 cut(s)	305, 527, 766, 931, 1243, 1436, 1683, 2233
CviQI	GTAC	4 cut(s)	88, 449, 957, 2038
DdeI	CTNAG	5 cut(s)	115, 651, 2043, 2289, 2324
DpnI	GATC	6 cut(s)	216, 707, 953, 1376, 1386, 2010
DpnII	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
DraI	TTTAAA	3 cut(s)	735, 1069, 2251
DrdI	GACNNNNNNGTC	1 cut(s)	2349
DseDI	GACNNNNNNGTC	1 cut(s)	2349
Eam1104I	CTCTTC	1 cut(s)	1470
EarI	CTCTTC	1 cut(s)	1470
Ecl136II	GAGCTC	1 cut(s)	829
Eco130I	CCWWGG	4 cut(s)	663, 765, 1292, 2318
Eco24I	GRGCYC	2 cut(s)	362, 831
Eco31I	GGTCTC	1 cut(s)	1024
Eco47I	GGWCC	6 cut(s)	1031, 1256, 1596, 1711, 1799, 2240
Eco47III	AGCGCT	1 cut(s)	1510
Eco53kI	GAGCTC	1 cut(s)	829
Eco57I	CTGAAG	4 cut(s)	735, 884, 1094, 2277
Eco88I	CYCGRG	1 cut(s)	799
Eco91I	GGTNACC	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	829
EcoO109I	RGGNCCY	3 cut(s)	251, 1596, 1711
EcoO65I	GGTNACC	1 cut(s)	566
EcoRI	GAATTC	2 cut(s)	745, 2370
EcoRII	CCWGG	1 cut(s)	1270
EcoT14I	CCWWGG	4 cut(s)	663, 765, 1292, 2318
EcoT22I	ATGCAT	2 cut(s)	130, 1684
EcoT38I	GRGCYC	2 cut(s)	362, 831
ErhI	CCWWGG	4 cut(s)	663, 765, 1292, 2318
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	8 cut(s)	308, 530, 769, 934, 1246, 1439, 1686, 2236
FalI	AAGNNNNNCTT	6 cut(s)	74, 106, 1092, 1124, 1530, 1562
FaqI	GGGAC	3 cut(s)	515, 1724, 1834
FatI	CATG	8 cut(s)	304, 526, 765, 930, 1242, 1435, 1682, 2232
FauNDI	CATATG	1 cut(s)	630
Fnu4HI	GCNGC	7 cut(s)	198, 201, 204, 207, 915, 1440, 2169
FokI	GGATG	7 cut(s)	120, 447, 782, 899, 1211, 1311, 1418
FriOI	GRGCYC	2 cut(s)	362, 831
Fsp4HI	GCNGC	7 cut(s)	198, 201, 204, 207, 915, 1440, 2169
FspBI	CTAG	7 cut(s)	212, 239, 612, 1062, 1824, 1890, 1955
GlaI	GCGC	1 cut(s)	1510
GluI	GCNGC	7 cut(s)	198, 201, 204, 207, 915, 1440, 2169
GsuI	CTGGAG	1 cut(s)	1101
HaeII	RGCGCY	1 cut(s)	1512
HaeIII	GGCC	4 cut(s)	68, 110, 253, 1270
HapII	CCGG	5 cut(s)	69, 355, 832, 1178, 1395
HhaI	GCGC	1 cut(s)	1511
Hin1II	CATG	8 cut(s)	308, 530, 769, 934, 1246, 1439, 1686, 2236
Hin6I	GCGC	1 cut(s)	1509
HinP1I	GCGC	1 cut(s)	1509
HincII	GTYRAC	1 cut(s)	2354
HindII	GTYRAC	1 cut(s)	2354
HindIII	AAGCTT	2 cut(s)	1091, 2198
HpaII	CCGG	5 cut(s)	69, 355, 832, 1178, 1395
HphI	GGTGA	3 cut(s)	578, 1055, 1204
Hpy166II	GTNNAC	6 cut(s)	34, 88, 463, 1479, 1609, 2354
Hpy188I	TCNGA	6 cut(s)	118, 219, 374, 967, 1571, 2292
Hpy8I	GTNNAC	6 cut(s)	34, 88, 463, 1479, 1609, 2354
Hpy99I	CGWCG	2 cut(s)	1568, 1571
HpyAV	CCTTC	9 cut(s)	764, 997, 1094, 1495, 1815, 1849, 2014, 2252, 2290
HpyCH4III	ACNGT	5 cut(s)	187, 539, 1200, 1972, 1993
HpyCH4IV	ACGT	2 cut(s)	36, 459
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 206, 902, 911, 920, 1955, 2048
HpyF3I	CTNAG	5 cut(s)	115, 651, 2043, 2289, 2324
HpySE526I	ACGT	2 cut(s)	36, 459
Hsp92II	CATG	8 cut(s)	308, 530, 769, 934, 1246, 1439, 1686, 2236
HspAI	GCGC	1 cut(s)	1509
Kpn2I	TCCGGA	2 cut(s)	354, 1177
Kzo9I	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
LguI	GCTCTTC	1 cut(s)	1470
LmnI	GCTCC	2 cut(s)	357, 834
Lsp1109I	GCAGC	6 cut(s)	187, 209, 218, 901, 1426, 2155
LweI	GCATC	9 cut(s)	137, 338, 493, 511, 901, 1233, 1549, 1967, 2326
MaeI	CTAG	7 cut(s)	212, 239, 612, 1062, 1824, 1890, 1955
MaeII	ACGT	2 cut(s)	36, 459
MaeIII	GTNAC	2 cut(s)	566, 1408
MalI	GATC	6 cut(s)	216, 707, 953, 1376, 1386, 2010
MboI	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
MboII	GAAGA	6 cut(s)	85, 610, 741, 1457, 1729, 1799
MfeI	CAATTG	2 cut(s)	881, 936
MflI	RGATCY	5 cut(s)	214, 705, 1374, 1384, 2008
MhlI	GDGCHC	3 cut(s)	312, 362, 831
MlyI	GAGTC	5 cut(s)	383, 624, 1168, 1202, 2058
MmeI	TCCRAC	3 cut(s)	874, 1549, 1999
MnlI	CCTC	8 cut(s)	122, 144, 362, 472, 1141, 1751, 1812, 2296
Mph1103I	ATGCAT	2 cut(s)	130, 1684
MroI	TCCGGA	2 cut(s)	354, 1177
MroXI	GAANNNNTTC	1 cut(s)	1791
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	1982
MspI	CCGG	5 cut(s)	69, 355, 832, 1178, 1395
MspR9I	CCNGG	2 cut(s)	70, 1272
MunI	CAATTG	2 cut(s)	881, 936
Mva1269I	GAATGC	3 cut(s)	232, 1684, 2053
MvaI	CCWGG	1 cut(s)	1272
MwoI	GCNNNNNNNGC	7 cut(s)	203, 206, 902, 911, 920, 1955, 2048
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	765
NdeI	CATATG	1 cut(s)	630
NdeII	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
NlaIII	CATG	8 cut(s)	308, 530, 769, 934, 1246, 1439, 1686, 2236
NlaIV	GGNNCC	6 cut(s)	67, 359, 1504, 1653, 1712, 2242
NmuCI	GTSAC	2 cut(s)	566, 1408
NsiI	ATGCAT	2 cut(s)	130, 1684
PciSI	GCTCTTC	1 cut(s)	1470
PctI	GAATGC	3 cut(s)	232, 1684, 2053
PdmI	GAANNNNTTC	1 cut(s)	1791
PfeI	GAWTC	5 cut(s)	59, 483, 1631, 1893, 2090
PflMI	CCANNNNNTGG	1 cut(s)	1316
PkrI	GCNGC	7 cut(s)	199, 202, 205, 208, 916, 1441, 2170
PleI	GAGTC	5 cut(s)	383, 623, 1168, 1202, 2058
PpsI	GAGTC	5 cut(s)	383, 623, 1168, 1202, 2058
Ppu21I	YACGTR	1 cut(s)	460
PpuMI	RGGWCCY	2 cut(s)	1596, 1711
PshAI	GACNNNNGTC	1 cut(s)	1826
PshBI	ATTAAT	3 cut(s)	6, 596, 1782
PsiI	TTATAA	4 cut(s)	578, 1014, 1127, 1521
Psp124BI	GAGCTC	1 cut(s)	831
Psp1406I	AACGTT	1 cut(s)	36
Psp5II	RGGWCCY	2 cut(s)	1596, 1711
Psp6I	CCWGG	1 cut(s)	1270
PspEI	GGTNACC	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	1270
PspN4I	GGNNCC	6 cut(s)	67, 359, 1504, 1653, 1712, 2242
PspPI	GGNCC	9 cut(s)	66, 109, 251, 1031, 1256, 1596, 1711, 1799, 2240
PspPPI	RGGWCCY	2 cut(s)	1596, 1711
PstNI	CAGNNNCTG	2 cut(s)	563, 1634
PsuI	RGATCY	5 cut(s)	214, 705, 1374, 1384, 2008
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	4 cut(s)	89, 450, 958, 2039
RsaNI	GTAC	4 cut(s)	88, 449, 957, 2038
RseI	CAYNNNNRTG	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	831
SapI	GCTCTTC	1 cut(s)	1470
SatI	GCNGC	7 cut(s)	198, 201, 204, 207, 915, 1440, 2169
Sau3AI	GATC	6 cut(s)	214, 705, 951, 1374, 1384, 2008
Sau96I	GGNCC	9 cut(s)	66, 109, 251, 1031, 1256, 1596, 1711, 1799, 2240
SchI	GAGTC	5 cut(s)	383, 624, 1168, 1202, 2058
ScrFI	CCNGG	2 cut(s)	70, 1272
SduI	GDGCHC	3 cut(s)	312, 362, 831
SfaNI	GCATC	9 cut(s)	137, 338, 493, 511, 901, 1233, 1549, 1967, 2326
SinI	GGWCC	6 cut(s)	1031, 1256, 1596, 1711, 1799, 2240
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	91, 1982
SmoI	CTYRAG	2 cut(s)	91, 1982
SpeI	ACTAGT	1 cut(s)	1823
SsiI	CCGC	1 cut(s)	203
SspI	AATATT	2 cut(s)	246, 1929
SspMI	CTAG	7 cut(s)	212, 239, 612, 1062, 1824, 1890, 1955
SstI	GAGCTC	1 cut(s)	831
StyD4I	CCNGG	2 cut(s)	68, 1270
StyI	CCWWGG	4 cut(s)	663, 765, 1292, 2318
TaaI	ACNGT	5 cut(s)	187, 539, 1200, 1972, 1993
TaiI	ACGT	2 cut(s)	39, 462
TaqI	TCGA	4 cut(s)	740, 1379, 1777, 2334
TaqII	GACCGA	1 cut(s)	728
TatI	WGTACW	2 cut(s)	87, 956
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	5 cut(s)	59, 483, 1631, 1893, 2090
TscAI	CASTG	2 cut(s)	36, 1417
TseFI	GTSAC	2 cut(s)	566, 1408
TseI	GCWGC	6 cut(s)	197, 200, 206, 914, 1439, 2168
Tsp45I	GTSAC	2 cut(s)	566, 1408
TspRI	CASTG	2 cut(s)	36, 1417
Van91I	CCANNNNNTGG	1 cut(s)	1316
Vha464I	CTTAAG	1 cut(s)	1982
VpaK11BI	GGWCC	6 cut(s)	1031, 1256, 1596, 1711, 1799, 2240
VspI	ATTAAT	3 cut(s)	6, 596, 1782
XapI	RAATTY	6 cut(s)	427, 736, 745, 1276, 1364, 2370
XbaI	TCTAGA	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1167
XmnI	GAANNNNTTC	1 cut(s)	1791
XspI	CTAG	7 cut(s)	212, 239, 612, 1062, 1824, 1890, 1955
Zsp2I	ATGCAT	2 cut(s)	130, 1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.