Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

68040883 .. 68041651

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGCACAAGCTTGTGGTACTCCTTCTCAACGATGGTTTTTGCACACCGGGAGCCAGTAGTGAGTAACTTGGCTAGGTTTGTCGTGATCACATGGTGCTTTGTAGTTCTCATACTGACTGAAAGTTACACTGCCAGTTTCAGCTCCATTTTGACAGTTCAACAGCTCCAAAAGAACATTTCCGATGTAAACCAGCTCCTGAAGAATGGGGACACTGTTGGCTACCAAACAGCTTCTTTTGTTTATGGGATTTTGAGGCAACTAGGATTTCAGGATGAAAAACTTAAAGACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

98

Amino Acids

11.12

Weight (kDa)

6.53

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	2 - 69	4.5e-21	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	221
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	5 cut(s)	12, 144, 166, 196, 233
AluI	AGCT	5 cut(s)	12, 144, 166, 196, 233
AlwNI	CAGNNNCTG	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	8
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	2 cut(s)	75, 263
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	56, 135
BseGI	GGATG	1 cut(s)	280
BseNI	ACTGG	2 cut(s)	56, 135
BseSI	GKGCMC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	56, 135
BssMI	GATC	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	157, 217
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	129, 213
CaiI	CAGNNNCTG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	8 cut(s)	12, 55, 74, 144, 166, 196, 222, 233
CviKI_1	RGCY	8 cut(s)	12, 55, 74, 144, 166, 196, 222, 233
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DraIII	CACNNNGTG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	221
FaeI	CATG	1 cut(s)	96
FaiI	YATR	4 cut(s)	94, 113, 246, 295
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	92
FbaI	TGATCA	1 cut(s)	87
FokI	GGATG	1 cut(s)	287
FspBI	CTAG	2 cut(s)	75, 263
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	10
HpaII	CCGG	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	85, 199, 272
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	157, 217
HpyCH4V	TGCA	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	4 cut(s)	52, 149, 171, 201
LpnPI	CCDG	6 cut(s)	62, 69, 148, 206, 212, 257
MaeI	CTAG	2 cut(s)	75, 263
MaeIII	GTNAC	2 cut(s)	65, 125
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	8
MnlI	CCTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	50
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	285
Sau3AI	GATC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	14, 80, 146, 168, 198, 235, 294
SspMI	CTAG	2 cut(s)	75, 263
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	157, 217
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	136, 220
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	136, 220
XspI	CTAG	2 cut(s)	75, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.