Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

42685156 .. 42688922

Gene Structure 3767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGCTCAAGAAACCCCGCAATCTTGTTCTTTCTGTCTTTTTTCTGTTTCTTTCTTCATGGATTTGCTTAGCCATAGCACAAAACAAAACCACTATAATACCAGTGAATGTGGGTGTTATTCTTGATATAAATCAAGCCTATGGGAAGATTTGGTTGAGTTGCATCAAACTGGCGCTCTCAGACTTCTATGCATCTCACGTTCACTACAAAACAAGGCTGGTCTTGAACATTAGGGATTCCGAGAACAACGTTGTACGAGCAGCTGCTGCAGCTCTAGATTTGATAAAGAATACACAAGTGCAAGCCATTTTAGGACCTGTGACATCGATGGATGCGAGCTTTGTTATTAATTTGGGCGACGAAGCTCAAGTGCCAATTATTTCATTTTCTGCATCAAGCCCATCTCTTACTTCACTCCGCAGCTCCTACTTTTTCCAAATTACACAGGTTGACTCGTCCCAGGTGAATGCCATAAGTGCTATCGTTCACAATTTTGGATGGAGACAAGTTGTACCCATCTACGTAGACACAGAATACGGGGAAGGAGTCATACCTTTTCTAACTGATGCATTGCAAGAGGTTGATGTTCGTGTCACCTATCGAAGTGCAATTTCCCCATTAGCCACTGATGACCAAATTCTTCAAGAACTATACAAGTTGATGACCATGCAAACTAGGGTCTTCATTGTGCATATGAATCCCAATCTAGGTTCTAGGCTCTTTGCCAAGGCAAAAGAGATTGGAATGATGAGTCAAGGATATGTCTGGATCATGACTAATGGGTTAGCCAATCGGTTAACATCGATGAATTCTACAGTCATAAGTTCCATGCAAGGTGTAATAGGTGTACAAACATACTTCGCTCAGACAATGGAGCTTGAAGAATTCAACTTCCAGTGGAAGCAACAATTCCTGCAAGACAATCCAACCCTCGTTGATGCTGAATTGGATATCTGGGCACTATGGGCTTATGATGCAGCTTTTGCACTAGCCATGGCAATCGAAGAAGTGGGGATCACAAGTGCTGTCGACTTATTCCGAAAGAAAAACTCCTCCTTCAGTTTGACAGATCTTGAGAACATTGAGATTTCTAAGTATGGTACGGACCTCTGCCGAGCCCTTTCAATGACTAGATTTGAAGGCATAGCTGGAAATTTCTACATTGTTGATGGTCAACTTCAGTCATCAACCTTTCGTATAGTGAATATAAATGAGGATGGAGCAAGAGATATTGGATTTTGGACACCACAAAATGGACTCGTGAACAAATTGAATTTGGCAAATACAAGCATACTTTCAACTAATTCGAAATCCAACCTTAAAGCTAGTGTCATATGGCCTGGAGATTCTCTCTCTTTTCCCAAGGGATGGGAGATCCCAACAAACGGCAGAAAGTTGAGAATAGGAGTTCCTGTTAATGTCGGTGTTCCTGAGTTTGTTAAGGTCACAAAAGATCCAAGCACACATACAACTGAAGTCACAGGGTTTTCTATTGACGTCTTTAAGGCTGCAATAGAGGTATTGCCATATTCTCTTCCGTATGAGTTCATTCCCTTTGAAAATCCTACTGGCTCCATTGCCGCAACTTACAACGATTTGTGCTATCAAGTATATCTTGGGAGAGTGGTCAGCAACTTGGGAAGATTTGTGATGATAATATGGGTATTTGTTTTGTTAATACTGACACAAAGTTACACGGCTAGTCTGGCTTCACTATTAACAGTCCAACAACTTCAACCAACTGTTACCGATATAAAAGATCTTTTAAGGAAGGGAGAAAACGTGGGATACAGGAGTACTGCTTATACTTATGACCTATTGAAACAACTAGGTTTTGGTGATTCCAAGCTTAAAGGCTTTACAACTGTTGAAGAAATTCAGGAAGCTCTTTCAAAAGGGAGCCCAAATGGTGGTATTTCTGCTTTTGTTGACGAAACGCCTTACACGAAGCTTCTTGTAGCCAAATATTGTTCGAAGTATACCATGGTTGGACCTATCTTCAAAACTGTTGGGTTTGGCTTCGTGTTCCGAAAACGTTCCCCTCTTGTACCTGACGTATCACAAGCAGTGCTAAACGTGACCGAAGGAGAGAAGATATTGAACATTGAAAACAAATGGTTCAATAAACAAGAAAGCAATTGTCAAGACTCTAGTACCCAAAAAGTGTCTAGCAACAGTCTTGGGCTTGCCAGCTTTTGGGGTTTATTCTTGATTGCGGGGCTGGCTTCCATACTCGCACTCGTCATCTTTATAGCTTGCTTTCTTTACAAGCATAGAAATATGGTTCCCTCTGACTCGGGTGCCTCGAGATGGAGAAGGTTGCGGATCATGTTCGAAATCTTCAACCAAAAGGACCTTGACTCTCATACTTTTAAAACAAGTCGACAACGAGATTCAGTTCAGGCCCCGGTAAATAACACCTTCGAAGTAGTCAACTACAATTCAAACCAGACAGAGATACATTCTGTATCTTTTGAAGAACAAGAAATACCATCAACTGATCAAGACTCAATAGAAGTAGCCACTGACGTTGCTATTACAATTCAAGAAATTCAAGCAACTACTCTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

858

Amino Acids

95.48

Weight (kDa)

5.63

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	35 - 347	1.8e-23	Periplasmic binding protein
ANF_receptor	PF01094	52 - 405	2e-83	Receptor family ligand binding region
Lig_chan	PF00060	540 - 742	4.5e-23	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1500
AccB1I	GGYRCC	1 cut(s)	2300
AccB7I	CCANNNNNTGG	4 cut(s)	1253, 1368, 1910, 2196
AccI	GTMKAC	4 cut(s)	525, 1029, 1979, 2383
AciI	CCGC	5 cut(s)	16, 418, 1581, 2216, 2323
AclI	AACGTT	2 cut(s)	249, 2035
AclWI	GGATC	5 cut(s)	776, 1022, 1369, 1448, 2333
AcsI	RAATTY	7 cut(s)	636, 808, 884, 1153, 1273, 1875, 2550
AcuI	CTGAAG	3 cut(s)	1042, 1163, 1494
AcyI	GRCGYC	1 cut(s)	1497
AfaI	GTAC	7 cut(s)	255, 513, 849, 1102, 1798, 2049, 2155
AfiI	CCNNNNNNNGG	7 cut(s)	707, 1253, 1368, 1385, 1910, 2196, 2310
AjnI	CCWGG	2 cut(s)	459, 1339
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	5 cut(s)	776, 1022, 1369, 1448, 2333
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	2 cut(s)	2296, 2305
AoxI	GGCC	2 cut(s)	1337, 2403
ApeKI	GCWGC	7 cut(s)	260, 263, 266, 269, 420, 977, 1508
ApoI	RAATTY	7 cut(s)	636, 808, 884, 1153, 1273, 1875, 2550
AseI	ATTAAT	1 cut(s)	348
Asp700I	GAANNNNTTC	2 cut(s)	1875, 2035
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	5 cut(s)	314, 1105, 1991, 2353, 2404
AsuC2I	CCSGG	1 cut(s)	2408
AsuHPI	GGTGA	3 cut(s)	475, 586, 1850
AsuII	TTCGAA	4 cut(s)	1307, 1973, 2334, 2424
AvaI	CYCGRG	2 cut(s)	2296, 2305
AvaII	GGWCC	4 cut(s)	314, 1105, 1991, 2353
BaeGI	GKGCMC	1 cut(s)	961
BaeI	ACNNNNGTAYC	4 cut(s)	1780, 1813, 2137, 2170
BanI	GGYRCC	1 cut(s)	2300
BanII	GRGCYC	2 cut(s)	1120, 1904
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BauI	CACGAG	1 cut(s)	1259
BbsI	GAAGAC	1 cut(s)	673
BbvI	GCAGC	7 cut(s)	250, 253, 272, 281, 432, 989, 1495
BccI	CCATC	9 cut(s)	322, 409, 492, 524, 1163, 1211, 1362, 2304, 2500
BceAI	ACGGC	2 cut(s)	1402, 1713
BciT130I	CCWGG	2 cut(s)	461, 1341
BciVI	GTATCC	1 cut(s)	1781
BclI	TGATCA	1 cut(s)	2500
BcnI	CCSGG	1 cut(s)	2408
BcoDI	GTCTC	1 cut(s)	496
BfmI	CTRYAG	2 cut(s)	267, 813
BfoI	RGCGCY	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	1781
BglII	AGATCT	2 cut(s)	1069, 1759
BisI	GCNGC	8 cut(s)	261, 264, 267, 270, 421, 978, 1509, 1581
BlpI	GCTNAGC	1 cut(s)	67
BlsI	GCNGC	8 cut(s)	262, 265, 268, 271, 422, 979, 1510, 1582
BmcAI	AGTACT	1 cut(s)	1798
Bme1390I	CCNGG	3 cut(s)	461, 1341, 2408
Bme18I	GGWCC	4 cut(s)	314, 1105, 1991, 2353
BmeT110I	CYCGRG	2 cut(s)	2296, 2305
BmgT120I	GGNCC	5 cut(s)	314, 1105, 1991, 2353, 2404
BmiI	GGNNCC	5 cut(s)	1573, 1901, 2286, 2302, 2406
BmrFI	CCNGG	3 cut(s)	461, 1341, 2408
BmsI	GCATC	7 cut(s)	171, 200, 322, 401, 556, 928, 964
BpiI	GAAGAC	1 cut(s)	673
BplI	GAGNNNNNCTC	2 cut(s)	1335, 1367
BpmI	CTGGAG	1 cut(s)	1362
Bpu1102I	GCTNAGC	1 cut(s)	67
Bpu14I	TTCGAA	4 cut(s)	1307, 1973, 2334, 2424
BpuEI	CTTGAG	2 cut(s)	351, 1094
BpuMI	CCSGG	1 cut(s)	2408
Bsa29I	ATCGAT	2 cut(s)	326, 803
BsaAI	YACGTR	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	1497
BsaJI	CCNNGG	6 cut(s)	459, 726, 993, 1362, 1983, 2406
BsaXI	ACNNNNNCTCC	4 cut(s)	1398, 1428, 1767, 1797
Bsc4I	CCNNNNNNNGG	7 cut(s)	707, 1253, 1368, 1385, 1910, 2196, 2310
Bse1I	ACTGG	4 cut(s)	101, 174, 895, 1573
Bse3DI	GCAATG	2 cut(s)	569, 1575
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	461, 1341
BseCI	ATCGAT	2 cut(s)	326, 803
BseDI	CCNNGG	6 cut(s)	459, 726, 993, 1362, 1983, 2406
BseGI	GGATG	4 cut(s)	337, 503, 1222, 1373
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	7 cut(s)	707, 1253, 1368, 1385, 1910, 2196, 2310
BseMI	GCAATG	2 cut(s)	569, 1575
BseMII	CTCAG	3 cut(s)	192, 878, 1422
BseNI	ACTGG	4 cut(s)	101, 174, 895, 1573
BseRI	GAGGAG	1 cut(s)	1042
BseSI	GKGCMC	1 cut(s)	961
BseXI	GCAGC	7 cut(s)	250, 253, 272, 281, 432, 989, 1495
BshFI	GGCC	2 cut(s)	1339, 2405
BshNI	GGYRCC	1 cut(s)	2300
BshVI	ATCGAT	2 cut(s)	326, 803
BsiHKCI	CYCGRG	2 cut(s)	2296, 2305
BsiSI	CCGG	1 cut(s)	2408
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	7 cut(s)	707, 1253, 1368, 1385, 1910, 2196, 2310
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	1339, 2405
BsoBI	CYCGRG	2 cut(s)	2296, 2305
Bsp119I	TTCGAA	4 cut(s)	1307, 1973, 2334, 2424
Bsp1286I	GDGCHC	3 cut(s)	961, 1120, 1904
Bsp1407I	TGTACA	1 cut(s)	847
Bsp143I	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
Bsp1720I	GCTNAGC	1 cut(s)	67
Bsp19I	CCATGG	2 cut(s)	993, 1983
BspACI	CCGC	5 cut(s)	16, 418, 1581, 2216, 2323
BspANI	GGCC	2 cut(s)	1339, 2405
BspCNI	CTCAG	3 cut(s)	191, 877, 1423
BspDI	ATCGAT	2 cut(s)	326, 803
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	5 cut(s)	1573, 1901, 2286, 2302, 2406
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	5 cut(s)	776, 1022, 1369, 1448, 2333
BspT104I	TTCGAA	4 cut(s)	1307, 1973, 2334, 2424
BspT107I	GGYRCC	1 cut(s)	2300
BsrDI	GCAATG	2 cut(s)	569, 1575
BsrGI	TGTACA	1 cut(s)	847
BsrI	ACTGG	4 cut(s)	101, 174, 895, 1573
BssECI	CCNNGG	6 cut(s)	459, 726, 993, 1362, 1983, 2406
BssMI	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
BssNAI	GTATAC	1 cut(s)	1980
BssNI	GRCGYC	1 cut(s)	1497
BssSI	CACGAG	1 cut(s)	1259
BssT1I	CCWWGG	4 cut(s)	726, 993, 1362, 1983
Bst1107I	GTATAC	1 cut(s)	1980
Bst2BI	CACGAG	1 cut(s)	1259
Bst2UI	CCWGG	2 cut(s)	461, 1341
Bst4CI	ACNGT	6 cut(s)	817, 1723, 1744, 1867, 2008, 2177
Bst6I	CTCTTC	1 cut(s)	1539
BstACI	GRCGYC	1 cut(s)	1497
BstAPI	GCANNNNNTGC	2 cut(s)	266, 983
BstAUI	TGTACA	1 cut(s)	847
BstBAI	YACGTR	1 cut(s)	523
BstBI	TTCGAA	4 cut(s)	1307, 1973, 2334, 2424
BstC8I	GCNNGC	6 cut(s)	303, 337, 2187, 2191, 2223, 2257
BstDEI	CTNAG	5 cut(s)	67, 178, 864, 1092, 1431
BstDSI	CCRYGG	2 cut(s)	993, 1983
BstF5I	GGATG	4 cut(s)	337, 503, 1222, 1373
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	8 cut(s)	771, 1017, 1072, 1377, 1456, 1762, 2328, 2503
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
BstMWI	GCNNNNNNNGC	8 cut(s)	266, 269, 476, 965, 974, 983, 1706, 2222
BstNI	CCWGG	2 cut(s)	461, 1341
BstSCI	CCNGG	3 cut(s)	459, 1339, 2406
BstSFI	CTRYAG	2 cut(s)	267, 813
BstSLI	GKGCMC	1 cut(s)	961
BstSNI	TACGTA	1 cut(s)	523
BstV1I	GCAGC	7 cut(s)	250, 253, 272, 281, 432, 989, 1495
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	4 cut(s)	1069, 1374, 1453, 1759
BstYI	RGATCY	4 cut(s)	1069, 1374, 1453, 1759
BstZ17I	GTATAC	1 cut(s)	1980
Bsu15I	ATCGAT	2 cut(s)	326, 803
BsuI	GTATCC	1 cut(s)	1781
BsuRI	GGCC	2 cut(s)	1339, 2405
BsuTUI	ATCGAT	2 cut(s)	326, 803
BtgI	CCRYGG	2 cut(s)	993, 1983
BtsCI	GGATG	4 cut(s)	337, 503, 1222, 1373
BtsI	GCAGTG	1 cut(s)	2073
BtsIMutI	CAGTG	5 cut(s)	108, 624, 902, 2073, 2523
Cac8I	GCNNGC	6 cut(s)	303, 337, 2187, 2191, 2223, 2257
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	771
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	5 cut(s)	314, 1105, 1991, 2353, 2404
ClaI	ATCGAT	2 cut(s)	326, 803
Csp6I	GTAC	7 cut(s)	254, 512, 848, 1101, 1797, 2048, 2154
CspCI	CAANNNNNGTGG	2 cut(s)	2512, 2547
CviAII	CATG	7 cut(s)	57, 667, 772, 829, 994, 1984, 2329
CviQI	GTAC	7 cut(s)	254, 512, 848, 1101, 1797, 2048, 2154
DdeI	CTNAG	5 cut(s)	67, 178, 864, 1092, 1431
DpnI	GATC	8 cut(s)	770, 1016, 1071, 1376, 1455, 1761, 2327, 2502
DpnII	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
DraI	TTTAAA	1 cut(s)	2374
Eam1104I	CTCTTC	1 cut(s)	1539
EarI	CTCTTC	1 cut(s)	1539
Eco105I	TACGTA	1 cut(s)	523
Eco130I	CCWWGG	4 cut(s)	726, 993, 1362, 1983
Eco24I	GRGCYC	2 cut(s)	1120, 1904
Eco32I	GATATC	1 cut(s)	952
Eco47I	GGWCC	4 cut(s)	314, 1105, 1991, 2353
Eco57I	CTGAAG	3 cut(s)	1042, 1163, 1494
Eco88I	CYCGRG	2 cut(s)	2296, 2305
EcoO109I	RGGNCCY	3 cut(s)	314, 2353, 2404
EcoRI	GAATTC	2 cut(s)	808, 884
EcoRII	CCWGG	2 cut(s)	459, 1339
EcoRV	GATATC	1 cut(s)	952
EcoT14I	CCWWGG	4 cut(s)	726, 993, 1362, 1983
EcoT22I	ATGCAT	2 cut(s)	193, 571
EcoT38I	GRGCYC	2 cut(s)	1120, 1904
ErhI	CCWWGG	4 cut(s)	726, 993, 1362, 1983
FaeI	CATG	7 cut(s)	60, 670, 775, 832, 997, 1987, 2332
FalI	AAGNNNNNCTT	2 cut(s)	1599, 1631
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	7 cut(s)	56, 666, 771, 828, 993, 1983, 2328
FauI	CCCGC	2 cut(s)	23, 2209
FauNDI	CATATG	2 cut(s)	693, 1334
FbaI	TGATCA	1 cut(s)	2500
FblI	GTMKAC	4 cut(s)	525, 1029, 1979, 2383
Fnu4HI	GCNGC	8 cut(s)	261, 264, 267, 270, 421, 978, 1509, 1581
FokI	GGATG	4 cut(s)	344, 510, 1229, 1380
FriOI	GRGCYC	2 cut(s)	1120, 1904
Fsp4HI	GCNGC	8 cut(s)	261, 264, 267, 270, 421, 978, 1509, 1581
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	8 cut(s)	261, 264, 267, 270, 421, 978, 1509, 1581
GsuI	CTGGAG	1 cut(s)	1362
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	1339, 2405
HapII	CCGG	1 cut(s)	2408
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	1497
Hin1II	CATG	7 cut(s)	60, 670, 775, 832, 997, 1987, 2332
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	7 cut(s)	451, 798, 1030, 1175, 1930, 2384, 2434
HindII	GTYRAC	7 cut(s)	451, 798, 1030, 1175, 1930, 2384, 2434
HindIII	AAGCTT	2 cut(s)	1847, 1949
HpaI	GTTAAC	1 cut(s)	798
HpaII	CCGG	1 cut(s)	2408
HphI	GGTGA	3 cut(s)	475, 586, 1850
Hpy188I	TCNGA	6 cut(s)	181, 241, 867, 1040, 2030, 2293
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	7 cut(s)	536, 1066, 1133, 1765, 2078, 2310, 2431
HpyCH4III	ACNGT	6 cut(s)	817, 1723, 1744, 1867, 2008, 2177
HpyCH4IV	ACGT	9 cut(s)	198, 249, 522, 1497, 1782, 2035, 2055, 2076, 2529
HpyF10VI	GCNNNNNNNGC	8 cut(s)	266, 269, 476, 965, 974, 983, 1706, 2222
HpyF3I	CTNAG	5 cut(s)	67, 178, 864, 1092, 1431
HpySE526I	ACGT	9 cut(s)	198, 249, 522, 1497, 1782, 2035, 2055, 2076, 2529
Hsp92I	GRCGYC	1 cut(s)	1497
Hsp92II	CATG	7 cut(s)	60, 670, 775, 832, 997, 1987, 2332
HspAI	GCGC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	2500
KspAI	GTTAAC	1 cut(s)	798
Kzo9I	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
LmnI	GCTCC	5 cut(s)	428, 874, 1220, 1577, 1899
Lsp1109I	GCAGC	7 cut(s)	250, 253, 272, 281, 432, 989, 1495
LweI	GCATC	7 cut(s)	171, 200, 322, 401, 556, 928, 964
MaeII	ACGT	9 cut(s)	198, 249, 522, 1497, 1782, 2035, 2055, 2076, 2529
MaeIII	GTNAC	7 cut(s)	319, 592, 1444, 1477, 1691, 1744, 2077
MalI	GATC	8 cut(s)	770, 1016, 1071, 1376, 1455, 1761, 2327, 2502
MboI	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
MfeI	CAATTG	1 cut(s)	2137
MflI	RGATCY	4 cut(s)	1069, 1374, 1453, 1759
MhlI	GDGCHC	3 cut(s)	961, 1120, 1904
MlyI	GAGTC	8 cut(s)	446, 555, 760, 1251, 2141, 2288, 2354, 2501
MmeI	TCCRAC	4 cut(s)	950, 1338, 1750, 1969
MnlI	CCTC	9 cut(s)	571, 941, 1063, 1118, 1207, 1510, 2052, 2299, 2314
Mph1103I	ATGCAT	2 cut(s)	193, 571
MroXI	GAANNNNTTC	2 cut(s)	1875, 2035
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	2408
MspR9I	CCNGG	3 cut(s)	461, 1341, 2408
MunI	CAATTG	1 cut(s)	2137
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	2 cut(s)	461, 1341
MwoI	GCNNNNNNNGC	8 cut(s)	266, 269, 476, 965, 974, 983, 1706, 2222
NciI	CCSGG	1 cut(s)	2408
NcoI	CCATGG	2 cut(s)	993, 1983
NdeI	CATATG	2 cut(s)	693, 1334
NdeII	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
NlaIII	CATG	7 cut(s)	60, 670, 775, 832, 997, 1987, 2332
NlaIV	GGNNCC	5 cut(s)	1573, 1901, 2286, 2302, 2406
NmeAIII	GCCGAG	1 cut(s)	1139
NmuCI	GTSAC	5 cut(s)	319, 592, 1444, 1477, 2077
NsiI	ATGCAT	2 cut(s)	193, 571
NspV	TTCGAA	4 cut(s)	1307, 1973, 2334, 2424
PaeR7I	CTCGAG	1 cut(s)	2305
PagI	TCATGA	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	3 cut(s)	332, 1943, 2303
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	2 cut(s)	1875, 2035
PfeI	GAWTC	5 cut(s)	236, 697, 1346, 1841, 2393
PflMI	CCANNNNNTGG	4 cut(s)	1253, 1368, 1910, 2196
PkrI	GCNGC	8 cut(s)	262, 265, 268, 271, 422, 979, 1510, 1582
PleI	GAGTC	8 cut(s)	446, 554, 759, 1251, 2141, 2288, 2354, 2501
PpsI	GAGTC	8 cut(s)	446, 554, 759, 1251, 2141, 2288, 2354, 2501
Ppu21I	YACGTR	1 cut(s)	523
PpuMI	RGGWCCY	2 cut(s)	314, 2353
PshBI	ATTAAT	1 cut(s)	348
Psp1406I	AACGTT	2 cut(s)	249, 2035
Psp5II	RGGWCCY	2 cut(s)	314, 2353
Psp6I	CCWGG	2 cut(s)	459, 1339
PspGI	CCWGG	2 cut(s)	459, 1339
PspN4I	GGNNCC	5 cut(s)	1573, 1901, 2286, 2302, 2406
PspPI	GGNCC	5 cut(s)	314, 1105, 1991, 2353, 2404
PspPPI	RGGWCCY	2 cut(s)	314, 2353
PsrI	GAACNNNNNNTAC	2 cut(s)	2472, 2504
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	4 cut(s)	1069, 1374, 1453, 1759
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	7 cut(s)	255, 513, 849, 1102, 1798, 2049, 2155
RsaNI	GTAC	7 cut(s)	254, 512, 848, 1101, 1797, 2048, 2154
SalI	GTCGAC	2 cut(s)	1028, 2382
SatI	GCNGC	8 cut(s)	261, 264, 267, 270, 421, 978, 1509, 1581
Sau3AI	GATC	8 cut(s)	768, 1014, 1069, 1374, 1453, 1759, 2325, 2500
Sau96I	GGNCC	5 cut(s)	314, 1105, 1991, 2353, 2404
ScaI	AGTACT	1 cut(s)	1798
SchI	GAGTC	8 cut(s)	446, 555, 760, 1251, 2141, 2288, 2354, 2501
ScrFI	CCNGG	3 cut(s)	461, 1341, 2408
SduI	GDGCHC	3 cut(s)	961, 1120, 1904
SfaNI	GCATC	7 cut(s)	171, 200, 322, 401, 556, 928, 964
SfcI	CTRYAG	2 cut(s)	267, 813
Sfr274I	CTCGAG	1 cut(s)	2305
SfuI	TTCGAA	4 cut(s)	1307, 1973, 2334, 2424
SinI	GGWCC	4 cut(s)	314, 1105, 1991, 2353
SlaI	CTCGAG	1 cut(s)	2305
SmlI	CTYRAG	4 cut(s)	5, 366, 1073, 2305
SmoI	CTYRAG	4 cut(s)	5, 366, 1073, 2305
SnaBI	TACGTA	1 cut(s)	523
SsiI	CCGC	5 cut(s)	16, 418, 1581, 2216, 2323
SspI	AATATT	1 cut(s)	1967
StyD4I	CCNGG	3 cut(s)	459, 1339, 2406
StyI	CCWWGG	4 cut(s)	726, 993, 1362, 1983
TaaI	ACNGT	6 cut(s)	817, 1723, 1744, 1867, 2008, 2177
TaiI	ACGT	9 cut(s)	201, 252, 525, 1500, 1785, 2038, 2058, 2079, 2532
TaqII	GACCGA	1 cut(s)	2096
TatI	WGTACW	2 cut(s)	847, 1796
TauI	GCSGC	1 cut(s)	1583
TfiI	GAWTC	5 cut(s)	236, 697, 1346, 1841, 2393
TscAI	CASTG	5 cut(s)	108, 631, 902, 2073, 2530
TseFI	GTSAC	5 cut(s)	319, 592, 1444, 1477, 2077
TseI	GCWGC	7 cut(s)	260, 263, 266, 269, 420, 977, 1508
Tsp45I	GTSAC	5 cut(s)	319, 592, 1444, 1477, 2077
TspDTI	ATGAA	6 cut(s)	45, 372, 673, 710, 821, 1537
TspGWI	ACGGA	2 cut(s)	1118, 1527
TspRI	CASTG	5 cut(s)	108, 631, 902, 2073, 2530
Van91I	CCANNNNNTGG	4 cut(s)	1253, 1368, 1910, 2196
VpaK11BI	GGWCC	4 cut(s)	314, 1105, 1991, 2353
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	7 cut(s)	636, 808, 884, 1153, 1273, 1875, 2550
XbaI	TCTAGA	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	2305
XmiI	GTMKAC	4 cut(s)	525, 1029, 1979, 2383
XmnI	GAANNNNTTC	2 cut(s)	1875, 2035
ZraI	GACGTC	1 cut(s)	1498
ZrmI	AGTACT	1 cut(s)	1798
Zsp2I	ATGCAT	2 cut(s)	193, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.