Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

43781378 .. 43795882

Gene Structure 14505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGAGAGAGATATCGGCTGGTGAAGAAAGAGCAGCTCGGGCGAATTCCAGCTCGAGCTGTGTAGCTTCTCGGCCTCCTAGCGCCTTCCACGCTGTAGATCTGATAAACAATAAAGATGTCCAAGCAATCATAGGGCCCGGAACATCAATGGAGGCAAACTTTGTTATTAATGTGGGAACCCAAGCTAAAGTGCCCATTTTAACCTTTTCTGCATCAAGTCCTTGTCTTACTTCACTTGGGAGCTCCTTCTTTTTCCGACTTACACAAAATGACTTGATCCAAGTGAAAGCCATAAGTGGTATCGTTCAGAACTTTGGATGGAGACAAGTTGTTCCCATCTACGAAGACAATTCTTACGGAGAGGGAATCATACCTTTTCTAATCGATGCCCTGCAAGAATGTGATGCTCATGTTCCCTACAGAAGTGTAGTTTCTGAATCAGCCACTGATGATCAAATTGAAAAAGAGCTTTACAAGTTAATGACGATGCAAACTAGAGTCTTCGTTGTTCATATGATGAATCTTGATCTGTGCTCTAAGTTATTTTCCAAGGCAAAAAGTATTGGAATGATGAGTACAGATTATGTTTGGATCATGACTGGTGGGATATCTAATCGTATAAACTCGATGAGTTATTCAGACCGAAATTCCATGGAAGGTGTGTTAGGTATACAAACCGACATTCGAAGAACACCAAAGCTTAAGGAATTTGACAGGCGGTGGAAAATGAAATTCCAAAAAGACAATCCAAACATAACTTTGGATGTTTATGGATTTCAAGCTCATGATGCTATCTTTGCACTAGCTATGGCAGTCGAACAATTTGGAAATACAAGCATCGAATATCATAATGCGAGTGATTCCTTAAAGGCTACAGATCTTGATGCTCTTAAGGTATCTCAGTATGGTCCAGAACTTGCTAAAGCCCTATCTCGTACTAGATTTGAAGGCATAGCTGGAGAGTTCAATGTCGTAGAAGGGGAGCTTCAGTCATCAACTTATAAGATAATTAATATAATTGGTGGTAACGCAAAGAGAATTGCATTGTGTACTCCACAAAAAGGAATGGTTTCAGCAAACACAAGCAAAGTCTTTACTAATTCCAAGTGCATTTTTGAACCCATTAAATGGCCAGGTGATTCTTTCTCTGTTCCTAAAGGATGGGAGATCCCAACGAACAGAAAGAAGTTGAGAGTAGGAGTACCAGTCAAGGATAGTTTGACTGAGTTTGTTAAGATCACAAAAGATCCTAACACTAAAACAACGGCTGTCACAGGGTTCTGTATCGATGTCTTCAATGCTGCATTGGAATTTTTACCGTATGCTCTTCCTTATGAGTTCATTCCTTACGAAAATTCTAATGGCTCGATGGCTGGGACTTACGATGATTTGGTCTATCAAGTATTTCTTGATAAATTTGATGCTGTTATCGGAGATACAACAATTAGAGCAAACAGATCCTTGTATGTTGACTTTACAATGCCATACAGTGAATCTGATGTAGGAATGGTTGTGCCCATCAGCAACAGCAAAAGCAAAAATGCATGGATTTTCATGCAGCCTTTGACATGGGGCCTTTGGTTGACAACTTTGTGTTTCTTCATCTTTATTGCTTTCGTTGTCTGGGTGTTGGAACATCGAATAAACGAAGATTTTCGGGGTCCTCCTTCACATCAAGTTGGAACAAGCTTCTGGTTTTCTTTCTCAACCATGGTTTTTTCACATAGGGAGAAAGTGGTTAGCAACTCAGCTAGATTTGTGATGACTATATGGGTATTTGTTATGCTCATAGTGACACAAAGCTACACAGCTAATTTATCATCACTATTAACAGTCCAACAACCCCAGCCCACTGTTACCGAGTTAAATGATCTTTTAAGGAATGGCGATAATGTCGGCTACAGCAAGAATTCTTTTGTTCGTGAGGTCTTGATTGAAAAGGGTTTTAAAAACAGGGTCAAAGAAATTAAATTGATGGAAGATGGTGACAAAGAACTCACAAAAGGTACTGCAAAGGGCGGTATTGCTGCTTTTGTTGGTGATACCCCAGCCTTGGAGTTTTTTCTTGCAAAGTACTGCTCCAAATACATCATGGTTGGACCTATCTCCAAAACTAATGGGTTTGCCTTCGTGTTCCCTAAAGGTTCACCTCTTGTAGCTGATATGTCAAGCGCAATCCTACATGTGACCGAAGGGAAGAAGATTATGATGATTGAAGCCAATTGGATTAAGAAAGAAAACAATTGTCAAGGCTCAAGTTCCAGCAATATCTCTGGCCCCAACAGTCTTGGCCTTAATAGCTTCTGGGGACTATTCCTCATTGCTGGGATCGTTTCTGTATTCTCTCTTCTCATTTTTTTCACTTCCTTCATTTACAAGCACAAGCATGTCTTGATGTCCCCGGATTCAACAGCTTCTACATGGAGAAGGATTCGTGCCATATTTGAAACTTTTGATGATAGAGATGCCAGCTATTATAGTTCTACAAGTAGTCAAAATTTGAAAAAGTTCAGTGGTGTTGGCGTTCATGGACCAAATGCATCACTGGCTAGCAACTGGCCAGAAACTCCATTCAGCTATACAAACCATGATATTGTTGATAGCTTGAGAGCGAAGGGTGGCACTAACTTCCTTCGGTTCGATCCTCTTAACCCCCGTAGGTTACCTACACCGATCGGATGGTGCACGATCCCAATGATGACCCGGTTCAGTACACCACACCAGGAAAGGAAGAAAGTTAAAAAGAGGGAGAATGTCAATCTTCCGAACTCTACTATAGCATTAGATGCTGTTGCGAACAGTCGGTGTACTTATGAACATATTACGAGGTCTCGGGCGTGTCCCGAGCTTCATGGATGGTTGCTTTCCCGGATAGTCTGCAGAGTTGGAAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

965

Amino Acids

107.8

Weight (kDa)

8.88

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	31 - 341	7e-68	Receptor family ligand binding region
Peripla_BP_6	PF13458	31 - 278	1.6e-10	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	416 - 505	7.1e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	424 - 744	5.9e-06	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	524 - 777	2.1e-40	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
AccB7I	CCANNNNNTGG	1 cut(s)	1128
AccI	GTMKAC	1 cut(s)	670
AciI	CCGC	2 cut(s)	718, 2019
AclWI	GGATC	8 cut(s)	271, 599, 1162, 1241, 1452, 2336, 2636, 2683
AcoI	YGGCCR	2 cut(s)	1130, 2558
AcsI	RAATTY	9 cut(s)	43, 646, 707, 731, 1310, 1354, 1415, 1909, 2497
AcuI	CTGAAG	1 cut(s)	971
AfaI	GTAC	8 cut(s)	577, 937, 1051, 1203, 2008, 2075, 2713, 2809
AfiI	CCNNNNNNNGG	3 cut(s)	1061, 1128, 2053
AflII	CTTAAG	2 cut(s)	701, 890
AflIII	ACRYGT	1 cut(s)	2182
AjnI	CCWGG	2 cut(s)	1132, 2721
Alw21I	GWGCWC	3 cut(s)	245, 536, 2687
Alw26I	GTCTC	2 cut(s)	316, 2835
Alw44I	GTGCAC	1 cut(s)	2683
AlwI	GGATC	8 cut(s)	271, 599, 1162, 1241, 1452, 2336, 2636, 2683
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	4 cut(s)	36, 52, 2832, 2843
AoxI	GGCC	7 cut(s)	71, 134, 1130, 1573, 2275, 2290, 2558
ApaI	GGGCCC	1 cut(s)	138
ApaLI	GTGCAC	1 cut(s)	2683
ApeKI	GCWGC	4 cut(s)	32, 1301, 1558, 2027
ApoI	RAATTY	9 cut(s)	43, 646, 707, 731, 1310, 1354, 1415, 1909, 2497
AseI	ATTAAT	2 cut(s)	168, 1011
Asp700I	GAANNNNTTC	3 cut(s)	1069, 1653, 2507
AspLEI	GCGC	2 cut(s)	83, 2174
AspS9I	GGNCC	8 cut(s)	134, 135, 908, 1573, 1661, 2099, 2276, 2531
AsuC2I	CCSGG	4 cut(s)	138, 2402, 2704, 2869
AsuHPI	GGTGA	5 cut(s)	32, 1148, 1997, 2051, 2139
AsuII	TTCGAA	1 cut(s)	685
AsuNHI	GCTAGC	1 cut(s)	2549
AvaI	CYCGRG	4 cut(s)	36, 52, 2832, 2843
AvaII	GGWCC	4 cut(s)	908, 1661, 2099, 2531
BaeGI	GKGCMC	4 cut(s)	138, 195, 1518, 2687
BalI	TGGCCA	2 cut(s)	1132, 2560
BanII	GRGCYC	2 cut(s)	138, 245
BarI	GAAGNNNNNNTAC	2 cut(s)	2331, 2363
BbsI	GAAGAC	3 cut(s)	351, 493, 1285
Bbv12I	GWGCWC	3 cut(s)	245, 536, 2687
BbvI	GCAGC	4 cut(s)	44, 1288, 1570, 2014
BccI	CCATC	9 cut(s)	312, 344, 1155, 1363, 1526, 1969, 1976, 2673, 2850
BceAI	ACGGC	1 cut(s)	1281
BciT130I	CCWGG	2 cut(s)	1134, 2723
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	4 cut(s)	138, 2402, 2704, 2869
BcoDI	GTCTC	2 cut(s)	316, 2835
BfaI	CTAG	6 cut(s)	78, 495, 803, 939, 1752, 2550
BfmI	CTRYAG	6 cut(s)	93, 418, 873, 1900, 2775, 2878
BfoI	RGCGCY	1 cut(s)	84
BfrI	CTTAAG	2 cut(s)	701, 890
BglII	AGATCT	2 cut(s)	97, 877
BisI	GCNGC	4 cut(s)	33, 1302, 1559, 2028
BlsI	GCNGC	4 cut(s)	34, 1303, 1560, 2029
BmcAI	AGTACT	1 cut(s)	2075
Bme1390I	CCNGG	6 cut(s)	138, 1134, 2402, 2704, 2723, 2869
Bme18I	GGWCC	4 cut(s)	908, 1661, 2099, 2531
BmeT110I	CYCGRG	4 cut(s)	36, 52, 2832, 2843
BmgT120I	GGNCC	8 cut(s)	134, 135, 908, 1573, 1661, 2099, 2276, 2531
BmiI	GGNNCC	5 cut(s)	136, 178, 1574, 1662, 2278
BmrFI	CCNGG	6 cut(s)	138, 1134, 2402, 2704, 2723, 2869
BmtI	GCTAGC	1 cut(s)	2553
BpiI	GAAGAC	3 cut(s)	351, 493, 1285
BpmI	CTGGAG	1 cut(s)	978
Bpu14I	TTCGAA	1 cut(s)	685
BpuEI	CTTGAG	2 cut(s)	2239, 2626
BpuMI	CCSGG	4 cut(s)	138, 2402, 2704, 2869
Bsa29I	ATCGAT	2 cut(s)	384, 1287
BsaI	GGTCTC	1 cut(s)	2835
BsaJI	CCNNGG	5 cut(s)	549, 651, 1710, 2052, 2400
BsaXI	ACNNNNNCTCC	4 cut(s)	974, 1004, 1191, 1221
Bsc4I	CCNNNNNNNGG	3 cut(s)	1061, 1128, 2053
Bse1I	ACTGG	4 cut(s)	604, 1205, 2550, 2561
Bse3DI	GCAATG	1 cut(s)	2319
BseBI	CCWGG	2 cut(s)	1134, 2723
BseCI	ATCGAT	2 cut(s)	384, 1287
BseDI	CCNNGG	5 cut(s)	549, 651, 1710, 2052, 2400
BseGI	GGATG	5 cut(s)	323, 769, 1166, 2684, 2861
BseLI	CCNNNNNNNGG	3 cut(s)	1061, 1128, 2053
BseMI	GCAATG	1 cut(s)	2319
BseMII	CTCAG	3 cut(s)	914, 1215, 1761
BseNI	ACTGG	4 cut(s)	604, 1205, 2550, 2561
BseSI	GKGCMC	4 cut(s)	138, 195, 1518, 2687
BseXI	GCAGC	4 cut(s)	44, 1288, 1570, 2014
BseYI	CCCAGC	4 cut(s)	1373, 1845, 2047, 2324
Bsh1285I	CGRYCG	1 cut(s)	2676
BshFI	GGCC	7 cut(s)	73, 136, 1132, 1575, 2277, 2292, 2560
BshVI	ATCGAT	2 cut(s)	384, 1287
BsiEI	CGRYCG	1 cut(s)	2676
BsiHKAI	GWGCWC	3 cut(s)	245, 536, 2687
BsiHKCI	CYCGRG	4 cut(s)	36, 52, 2832, 2843
BsiSI	CCGG	4 cut(s)	138, 2402, 2704, 2869
BslFI	GGGAC	4 cut(s)	1390, 2322, 2383, 2826
BslI	CCNNNNNNNGG	3 cut(s)	1061, 1128, 2053
BsmAI	GTCTC	2 cut(s)	316, 2835
BsmFI	GGGAC	4 cut(s)	1390, 2322, 2383, 2826
BsnI	GGCC	7 cut(s)	73, 136, 1132, 1575, 2277, 2292, 2560
Bso31I	GGTCTC	1 cut(s)	2835
BsoBI	CYCGRG	4 cut(s)	36, 52, 2832, 2843
Bsp119I	TTCGAA	1 cut(s)	685
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	6 cut(s)	138, 195, 245, 536, 1518, 2687
Bsp19I	CCATGG	2 cut(s)	651, 1710
BspACI	CCGC	2 cut(s)	718, 2019
BspANI	GGCC	7 cut(s)	73, 136, 1132, 1575, 2277, 2292, 2560
BspCNI	CTCAG	3 cut(s)	913, 1216, 1760
BspDI	ATCGAT	2 cut(s)	384, 1287
BspHI	TCATGA	2 cut(s)	594, 784
BspLI	GGNNCC	5 cut(s)	136, 178, 1574, 1662, 2278
BspMAI	CTGCAG	1 cut(s)	2882
BspOI	GCTAGC	1 cut(s)	2553
BspPI	GGATC	8 cut(s)	271, 599, 1162, 1241, 1452, 2336, 2636, 2683
BspQI	GCTCTTC	1 cut(s)	1332
BspT104I	TTCGAA	1 cut(s)	685
BspTI	CTTAAG	2 cut(s)	701, 890
BspTNI	GGTCTC	1 cut(s)	2835
BsrDI	GCAATG	1 cut(s)	2319
BsrI	ACTGG	4 cut(s)	604, 1205, 2550, 2561
BssECI	CCNNGG	5 cut(s)	549, 651, 1710, 2052, 2400
BssNAI	GTATAC	1 cut(s)	671
BssT1I	CCWWGG	4 cut(s)	549, 651, 1710, 2052
Bst1107I	GTATAC	1 cut(s)	671
Bst2UI	CCWGG	2 cut(s)	1134, 2723
Bst4CI	ACNGT	6 cut(s)	1320, 1490, 1834, 1855, 2285, 2801
Bst6I	CTCTTC	2 cut(s)	1332, 2352
BstAFI	CTTAAG	2 cut(s)	701, 890
BstAPI	GCANNNNNTGC	1 cut(s)	2786
BstBI	TTCGAA	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	2470, 2551
BstDEI	CTNAG	4 cut(s)	537, 900, 1224, 1747
BstDSI	CCRYGG	2 cut(s)	651, 1710
BstEII	GGTNACC	1 cut(s)	2661
BstF5I	GGATG	5 cut(s)	323, 769, 1166, 2684, 2861
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 2174
BstMAI	GTCTC	2 cut(s)	316, 2835
BstMCI	CGRYCG	1 cut(s)	2676
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 89, 788, 797, 2298, 2546, 2786
BstNI	CCWGG	2 cut(s)	1134, 2723
BstNSI	RCATGY	2 cut(s)	2186, 2390
BstPI	GGTNACC	1 cut(s)	2661
BstSCI	CCNGG	6 cut(s)	136, 1132, 2400, 2702, 2721, 2867
BstSFI	CTRYAG	6 cut(s)	93, 418, 873, 1900, 2775, 2878
BstSLI	GKGCMC	4 cut(s)	138, 195, 1518, 2687
BstV1I	GCAGC	4 cut(s)	44, 1288, 1570, 2014
BstV2I	GAAGAC	3 cut(s)	351, 493, 1285
BstX2I	RGATCY	5 cut(s)	97, 877, 1167, 1246, 1457
BstYI	RGATCY	5 cut(s)	97, 877, 1167, 1246, 1457
BstZ17I	GTATAC	1 cut(s)	671
Bsu15I	ATCGAT	2 cut(s)	384, 1287
BsuRI	GGCC	7 cut(s)	73, 136, 1132, 1575, 2277, 2292, 2560
BsuTUI	ATCGAT	2 cut(s)	384, 1287
BtgI	CCRYGG	2 cut(s)	651, 1710
BtsCI	GGATG	5 cut(s)	323, 769, 1166, 2684, 2861
BtsIMutI	CAGTG	5 cut(s)	444, 1495, 1851, 2518, 2543
Cac8I	GCNNGC	2 cut(s)	2470, 2551
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	2 cut(s)	594, 784
CfoI	GCGC	2 cut(s)	83, 2174
Cfr13I	GGNCC	8 cut(s)	134, 135, 908, 1573, 1661, 2099, 2276, 2531
ClaI	ATCGAT	2 cut(s)	384, 1287
Csp6I	GTAC	8 cut(s)	576, 936, 1050, 1202, 2007, 2074, 2712, 2808
CviQI	GTAC	8 cut(s)	576, 936, 1050, 1202, 2007, 2074, 2712, 2808
DdeI	CTNAG	4 cut(s)	537, 900, 1224, 1747
DraI	TTTAAA	1 cut(s)	1948
EaeI	YGGCCR	2 cut(s)	1130, 2558
Eam1104I	CTCTTC	2 cut(s)	1332, 2352
EarI	CTCTTC	2 cut(s)	1332, 2352
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	4 cut(s)	549, 651, 1710, 2052
Eco24I	GRGCYC	2 cut(s)	138, 245
Eco31I	GGTCTC	1 cut(s)	2835
Eco32I	GATATC	2 cut(s)	12, 609
Eco47I	GGWCC	4 cut(s)	908, 1661, 2099, 2531
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	971
Eco88I	CYCGRG	4 cut(s)	36, 52, 2832, 2843
Eco91I	GGTNACC	1 cut(s)	2661
EcoICRI	GAGCTC	1 cut(s)	243
EcoO109I	RGGNCCY	3 cut(s)	134, 1573, 1661
EcoO65I	GGTNACC	1 cut(s)	2661
EcoRI	GAATTC	2 cut(s)	43, 1909
EcoRII	CCWGG	2 cut(s)	1132, 2721
EcoRV	GATATC	2 cut(s)	12, 609
EcoT14I	CCWWGG	4 cut(s)	549, 651, 1710, 2052
EcoT22I	ATGCAT	2 cut(s)	1546, 2542
EcoT38I	GRGCYC	2 cut(s)	138, 245
ErhI	CCWWGG	4 cut(s)	549, 651, 1710, 2052
FalI	AAGNNNNNCTT	6 cut(s)	969, 1001, 1392, 1424, 2375, 2407
FaqI	GGGAC	4 cut(s)	1390, 2322, 2383, 2826
FauNDI	CATATG	1 cut(s)	513
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	670
Fnu4HI	GCNGC	4 cut(s)	33, 1302, 1559, 2028
FokI	GGATG	5 cut(s)	330, 776, 1173, 2691, 2868
FriOI	GRGCYC	2 cut(s)	138, 245
Fsp4HI	GCNGC	4 cut(s)	33, 1302, 1559, 2028
FspBI	CTAG	6 cut(s)	78, 495, 803, 939, 1752, 2550
GlaI	GCGC	2 cut(s)	82, 2173
GluI	GCNGC	4 cut(s)	33, 1302, 1559, 2028
GsaI	CCCAGC	4 cut(s)	1377, 1849, 2051, 2328
GsuI	CTGGAG	1 cut(s)	978
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	7 cut(s)	73, 136, 1132, 1575, 2277, 2292, 2560
HapII	CCGG	4 cut(s)	138, 2402, 2704, 2869
HhaI	GCGC	2 cut(s)	83, 2174
Hin6I	GCGC	2 cut(s)	81, 2172
HinP1I	GCGC	2 cut(s)	81, 2172
HincII	GTYRAC	2 cut(s)	1471, 1584
HindII	GTYRAC	2 cut(s)	1471, 1584
HindIII	AAGCTT	2 cut(s)	698, 1687
HinfI	GANTC	9 cut(s)	366, 437, 498, 520, 860, 1139, 1493, 2405, 2431
HpaII	CCGG	4 cut(s)	138, 2402, 2704, 2869
HphI	GGTGA	5 cut(s)	32, 1148, 1997, 2051, 2139
Hpy166II	GTNNAC	8 cut(s)	671, 1050, 1471, 1584, 2147, 2685, 2714, 2808
Hpy188I	TCNGA	9 cut(s)	102, 257, 309, 436, 640, 1433, 1498, 2678, 2766
Hpy8I	GTNNAC	8 cut(s)	671, 1050, 1471, 1584, 2147, 2685, 2714, 2808
HpyCH4III	ACNGT	6 cut(s)	1320, 1490, 1834, 1855, 2285, 2801
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 89, 788, 797, 2298, 2546, 2786
HpyF3I	CTNAG	4 cut(s)	537, 900, 1224, 1747
HspAI	GCGC	2 cut(s)	81, 2172
Ksp22I	TGATCA	1 cut(s)	451
LguI	GCTCTTC	1 cut(s)	1332
LmnI	GCTCC	4 cut(s)	240, 248, 982, 2084
Lsp1109I	GCAGC	4 cut(s)	44, 1288, 1570, 2014
MaeI	CTAG	6 cut(s)	78, 495, 803, 939, 1752, 2550
MaeIII	GTNAC	7 cut(s)	1025, 1270, 1792, 1855, 1985, 2185, 2661
MfeI	CAATTG	2 cut(s)	2221, 2242
MflI	RGATCY	5 cut(s)	97, 877, 1167, 1246, 1457
MhlI	GDGCHC	6 cut(s)	138, 195, 245, 536, 1518, 2687
MlsI	TGGCCA	2 cut(s)	1132, 2560
MluNI	TGGCCA	2 cut(s)	1132, 2560
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	6 cut(s)	280, 1611, 1660, 1861, 2077, 2866
Mox20I	TGGCCA	2 cut(s)	1132, 2560
Mph1103I	ATGCAT	2 cut(s)	1546, 2542
MroXI	GAANNNNTTC	3 cut(s)	1069, 1653, 2507
MscI	TGGCCA	2 cut(s)	1132, 2560
MslI	CAYNNNNRTG	1 cut(s)	2385
Msp20I	TGGCCA	2 cut(s)	1132, 2560
MspCI	CTTAAG	2 cut(s)	701, 890
MspI	CCGG	4 cut(s)	138, 2402, 2704, 2869
MspR9I	CCNGG	6 cut(s)	138, 1134, 2402, 2704, 2723, 2869
MunI	CAATTG	2 cut(s)	2221, 2242
MvaI	CCWGG	2 cut(s)	1134, 2723
MwoI	GCNNNNNNNGC	7 cut(s)	38, 89, 788, 797, 2298, 2546, 2786
NciI	CCSGG	4 cut(s)	138, 2402, 2704, 2869
NcoI	CCATGG	2 cut(s)	651, 1710
NdeI	CATATG	1 cut(s)	513
NheI	GCTAGC	1 cut(s)	2549
NlaIV	GGNNCC	5 cut(s)	136, 178, 1574, 1662, 2278
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	4 cut(s)	1270, 1792, 1985, 2185
NsiI	ATGCAT	2 cut(s)	1546, 2542
NspI	RCATGY	2 cut(s)	2186, 2390
NspV	TTCGAA	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	52
PagI	TCATGA	2 cut(s)	594, 784
PciI	ACATGT	1 cut(s)	2182
PciSI	GCTCTTC	1 cut(s)	1332
PdmI	GAANNNNTTC	3 cut(s)	1069, 1653, 2507
PfeI	GAWTC	8 cut(s)	366, 437, 520, 860, 1139, 1493, 2405, 2431
PflMI	CCANNNNNTGG	1 cut(s)	1128
PfoI	TCCNGGA	1 cut(s)	2867
PkrI	GCNGC	4 cut(s)	34, 1303, 1560, 2029
Ple19I	CGATCG	1 cut(s)	2676
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	1661
PscI	ACATGT	1 cut(s)	2182
PshBI	ATTAAT	2 cut(s)	168, 1011
PsiI	TTATAA	1 cut(s)	1002
Psp124BI	GAGCTC	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	1661
Psp6I	CCWGG	2 cut(s)	1132, 2721
PspEI	GGTNACC	1 cut(s)	2661
PspFI	CCCAGC	4 cut(s)	1373, 1845, 2047, 2324
PspGI	CCWGG	2 cut(s)	1132, 2721
PspN4I	GGNNCC	5 cut(s)	136, 178, 1574, 1662, 2278
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	8 cut(s)	134, 135, 908, 1573, 1661, 2099, 2276, 2531
PspPPI	RGGWCCY	1 cut(s)	1661
PspXI	VCTCGAGB	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	2882
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	5 cut(s)	97, 877, 1167, 1246, 1457
PvuI	CGATCG	1 cut(s)	2676
RsaI	GTAC	8 cut(s)	577, 937, 1051, 1203, 2008, 2075, 2713, 2809
RsaNI	GTAC	8 cut(s)	576, 936, 1050, 1202, 2007, 2074, 2712, 2808
RseI	CAYNNNNRTG	1 cut(s)	2385
SacI	GAGCTC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	1332
SatI	GCNGC	4 cut(s)	33, 1302, 1559, 2028
Sau96I	GGNCC	8 cut(s)	134, 135, 908, 1573, 1661, 2099, 2276, 2531
ScaI	AGTACT	1 cut(s)	2075
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	6 cut(s)	138, 1134, 2402, 2704, 2723, 2869
SduI	GDGCHC	6 cut(s)	138, 195, 245, 536, 1518, 2687
SfcI	CTRYAG	6 cut(s)	93, 418, 873, 1900, 2775, 2878
Sfr274I	CTCGAG	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	685
SinI	GGWCC	4 cut(s)	908, 1661, 2099, 2531
SlaI	CTCGAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	2385
SmlI	CTYRAG	5 cut(s)	52, 701, 890, 2254, 2605
SmoI	CTYRAG	5 cut(s)	52, 701, 890, 2254, 2605
SsiI	CCGC	2 cut(s)	718, 2019
SspMI	CTAG	6 cut(s)	78, 495, 803, 939, 1752, 2550
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	6 cut(s)	136, 1132, 2400, 2702, 2721, 2867
StyI	CCWWGG	4 cut(s)	549, 651, 1710, 2052
TaaI	ACNGT	6 cut(s)	1320, 1490, 1834, 1855, 2285, 2801
TaqII	GACCGA	2 cut(s)	657, 2204
TatI	WGTACW	5 cut(s)	575, 1049, 2073, 2711, 2807
TfiI	GAWTC	8 cut(s)	366, 437, 520, 860, 1139, 1493, 2405, 2431
TscAI	CASTG	5 cut(s)	451, 1495, 1858, 2518, 2550
TseFI	GTSAC	4 cut(s)	1270, 1792, 1985, 2185
TseI	GCWGC	4 cut(s)	32, 1301, 1558, 2027
Tsp45I	GTSAC	4 cut(s)	1270, 1792, 1985, 2185
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	5 cut(s)	451, 1495, 1858, 2518, 2550
Van91I	CCANNNNNTGG	1 cut(s)	1128
Vha464I	CTTAAG	2 cut(s)	701, 890
VneI	GTGCAC	1 cut(s)	2683
VpaK11BI	GGWCC	4 cut(s)	908, 1661, 2099, 2531
VspI	ATTAAT	2 cut(s)	168, 1011
XapI	RAATTY	9 cut(s)	43, 646, 707, 731, 1310, 1354, 1415, 1909, 2497
XceI	RCATGY	2 cut(s)	2186, 2390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2089
XhoI	CTCGAG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	670
XmnI	GAANNNNTTC	3 cut(s)	1069, 1653, 2507
XspI	CTAG	6 cut(s)	78, 495, 803, 939, 1752, 2550
ZrmI	AGTACT	1 cut(s)	2075
Zsp2I	ATGCAT	2 cut(s)	1546, 2542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.