Rroxscaffold_3G00270350

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
62926210 .. 62929604
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270350.1

Sequence Viewer

Length: 1665 bp
ATGTACGTCGACAATGAGTTTGGAGAAGGAGTAATCCCTTACCTCTCCGACGCTCTACAAGAGATTGATGTTCGAATCCCTTATCGGAGTGTTATTTCCCCAACTGCCACCGATGACCAAATTGAAGCCGAGCTTTACAAGTTGGTGACAATGCAAACAAGGGTCTTCATTGTCCACATGTTACCTTCATTAGGAGTTGCTCGGTACAAGTTTCCGAGGGCTTTCGGGGACTTTAGTCTTGTTAATGGGCAACTTCCATCTTCAACTTTTGAGATTCTGAATGTGCTTGGAACTGGAGAAAATGTGAGATTTTTGGCTACGCCACTGCCCGGAGACACCTCCTCTGCTCCAAAAGGTTGGCAGATTCCTGCTAATGGGAAAAAGTTGAAGATTCTAGTTCCACTTAAAGATGGGTATAATGAATTTGTGAATGTGACATATGATACTAGCACTAACAAAACCAAGGTCATTGGTGGATACTGCTTAGAAGTCTTTGAAGCTGTAAGAAAAGCATTGCCTTATGATATCTCTTATGAGTTCTATGCTTATGCAAAGCCTGATGGTGAAACTGCTGGTAGTTACAATGATTTGGTCAACCAAGTGTTTTTAGGGAACTATGATGCTGCGGTGGGAGATATAACCATAAGAGCAAACAGGTCCTTGTATGTGGACTTCACATTGCCATACACAGAATCTGGGGTATCCATGATCGTGCCTATTGAAGACAATAAAAGGGAGCGAGTGGTTAGCAACTTGGCTAGGTTCGTAGTGGTCATATGGTGCGTGGTAGTGCTCATATTGACCCAGAGCTACACTGCTAGTTTAACATCAATGTCAACAGTTCAGCAGCTCCAACCAACTGTTGGTGATGTAAACTTTCTCCTGAAAAATGGAGACAACGTTGGTAATCAGGAAGGTTCTTTTGTTTACGGCATTTTGAGGCAACTAGGTTTTCGGGATGAGAAGCTTCAGACCTATAATTCCACAGAAGACTTGCATCGACTTTTTCAAATTGGGAGTACAAACGGTGGTGTAAGTGCTGCTTTTGATGAAACCCCATACTTCAAGGTTTTTATTGCAAGTTATTGCTCGAAATACACAATGCTTGATCCAACATTTAAAGCCGATGGTTTCGCCTTTGTCTTCCCAAAAGATTCACCTCTGGCTCGCGATGTTTGGAGGGCAATCTTGAATGTCTCTTCCAACAGTCTTAGCCTTGAAAGCTTCTGGGGTCTCTTCCTCATTGCTGGAGTAGCTTCAGTAATAGTTCTACTCATATTTGCGGGCACATTCTTGTATGAACACAAGGACATGTTAATCTGCTCTGATTCAGAGGATTCATCGTGGAAAAAACTTTGTGACATATTAAAACAATACGACCTAAAAGACCAGAAGAGCCATACTTTTAGGCGTGAAGATCAGAGCCAAATTGGAGCAGAGAGTGTTTCTGTTGAGCAGAGTCCCCAGAGCACACCTTATACTGATCATGGTCAATCACCTAAAGGTCAGAGCCAAATTGGAGCAGAGAGTGTTTCTGTTGAGGGGAGTCCACAAAGCACACCTCGTACTGATCATGGTCAGTCACCTAGAGAGACTGAACCTCAACAATTTGGAGAGATTGAACCAGCTACTGAGCTTGCTCAGGGACCAAGAGGAAATCAGTAG

Protein Analysis

554

Amino Acids

61.46

Weight (kDa)

4.87

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 2 - 60 2.9e-07 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 142 - 239 2.3e-11 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 244 - 419 2.6e-16 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 1 cut(s) 9
AccII CGCG 1 cut(s) 1170
AciI CCGC 2 cut(s) 626, 1283
AclI AACGTT 1 cut(s) 900
AclWI GGATC 1 cut(s) 1103
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 2 cut(s) 953, 1242
AfaI GTAC 4 cut(s) 5, 206, 1021, 1567
AfiI CCNNNNNNNGG 4 cut(s) 191, 329, 374, 863
AflIII ACRYGT 2 cut(s) 177, 1311
AluBI AGCT 9 cut(s) 133, 500, 810, 850, 967, 1224, 1256, 1628, 1636
AluI AGCT 9 cut(s) 133, 500, 810, 850, 967, 1224, 1256, 1628, 1636
Alw21I GWGCWC 2 cut(s) 795, 1472
Alw26I GTCTC 5 cut(s) 327, 888, 1201, 1238, 1586
AlwI GGATC 1 cut(s) 1103
AlwNI CAGNNNCTG 2 cut(s) 695, 1631
ApeKI GCWGC 3 cut(s) 623, 847, 1040
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 3 cut(s) 34, 450, 482
AspS9I GGNCC 2 cut(s) 657, 1646
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 6 cut(s) 157, 575, 878, 1149, 1488, 1575
AsuII TTCGAA 1 cut(s) 73
AvaII GGWCC 2 cut(s) 657, 1646
BaeGI GKGCMC 1 cut(s) 1289
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BbsI GAAGAC 4 cut(s) 157, 729, 996, 1135
Bbv12I GWGCWC 2 cut(s) 795, 1472
BbvI GCAGC 3 cut(s) 610, 859, 1027
BccI CCATC 4 cut(s) 265, 404, 554, 1121
BceAI ACGGC 1 cut(s) 946
BciVI GTATCC 2 cut(s) 470, 712
BclI TGATCA 2 cut(s) 1483, 1570
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 5 cut(s) 327, 888, 1201, 1238, 1586
BfaI CTAG 6 cut(s) 395, 447, 759, 819, 947, 1587
BfuI GTATCC 2 cut(s) 470, 712
BisI GCNGC 3 cut(s) 624, 848, 1041
BlsI GCNGC 3 cut(s) 625, 849, 1042
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 2 cut(s) 657, 1646
BmgT120I GGNCC 2 cut(s) 657, 1646
BmiI GGNNCC 1 cut(s) 1647
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 2 cut(s) 610, 1006
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 4 cut(s) 157, 729, 996, 1135
BpmI CTGGAG 2 cut(s) 315, 1269
Bpu10I CCTNAGC 1 cut(s) 1641
Bpu14I TTCGAA 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 2 cut(s) 215, 462
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 288, 318, 885, 915
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 329, 374, 863
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 3 cut(s) 512, 677, 1242
BseDI CCNNGG 2 cut(s) 215, 462
BseGI GGATG 1 cut(s) 964
BseLI CCNNNNNNNGG 4 cut(s) 191, 329, 374, 863
BseMI GCAATG 3 cut(s) 512, 677, 1242
BseMII CTCAG 2 cut(s) 1623, 1655
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 1 cut(s) 1289
BseXI GCAGC 3 cut(s) 610, 859, 1027
Bsh1236I CGCG 1 cut(s) 1170
BsiHKAI GWGCWC 2 cut(s) 795, 1472
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 3 cut(s) 242, 1446, 1659
BslI CCNNNNNNNGG 4 cut(s) 191, 329, 374, 863
BsmAI GTCTC 5 cut(s) 327, 888, 1201, 1238, 1586
BsmFI GGGAC 3 cut(s) 242, 1446, 1659
Bso31I GGTCTC 1 cut(s) 1238
Bsp119I TTCGAA 1 cut(s) 73
Bsp1286I GDGCHC 3 cut(s) 795, 1289, 1472
Bsp143I GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
Bsp68I TCGCGA 1 cut(s) 1170
BspACI CCGC 2 cut(s) 626, 1283
BspCNI CTCAG 2 cut(s) 1624, 1654
BspFNI CGCG 1 cut(s) 1170
BspLI GGNNCC 1 cut(s) 1647
BspPI GGATC 1 cut(s) 1103
BspQI GCTCTTC 1 cut(s) 1388
BspT104I TTCGAA 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 1238
BsrDI GCAATG 3 cut(s) 512, 677, 1242
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 215, 462
BssMI GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
BssT1I CCWWGG 1 cut(s) 462
Bst4CI ACNGT 4 cut(s) 841, 862, 1028, 1208
Bst6I CTCTTC 3 cut(s) 1204, 1241, 1388
BstBI TTCGAA 1 cut(s) 73
BstC8I GCNNGC 3 cut(s) 1168, 1285, 1638
BstDEI CTNAG 4 cut(s) 484, 1211, 1632, 1641
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 964
BstFNI CGCG 1 cut(s) 1170
BstKTI GATC 5 cut(s) 711, 1111, 1420, 1486, 1573
BstMAI GTCTC 5 cut(s) 327, 888, 1201, 1238, 1586
BstMBI GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
BstMWI GCNNNNNNNGC 2 cut(s) 1221, 1253
BstNSI RCATGY 2 cut(s) 181, 1315
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 328
BstSLI GKGCMC 1 cut(s) 1289
BstUI CGCG 1 cut(s) 1170
BstV1I GCAGC 3 cut(s) 610, 859, 1027
BstV2I GAAGAC 4 cut(s) 157, 729, 996, 1135
BstXI CCANNNNNNTGG 1 cut(s) 357
BsuI GTATCC 2 cut(s) 470, 712
BtgZI GCGATG 1 cut(s) 1185
BtsCI GGATG 1 cut(s) 964
BtsI GCAGTG 2 cut(s) 323, 813
BtsIMutI CAGTG 2 cut(s) 323, 813
BtuMI TCGCGA 1 cut(s) 1170
Cac8I GCNNGC 3 cut(s) 1168, 1285, 1638
CaiI CAGNNNCTG 2 cut(s) 695, 1631
Cfr13I GGNCC 2 cut(s) 657, 1646
CseI GACGC 1 cut(s) 59
Csp6I GTAC 4 cut(s) 4, 205, 1020, 1566
CviAII CATG 5 cut(s) 178, 706, 1312, 1487, 1574
CviQI GTAC 4 cut(s) 4, 205, 1020, 1566
DdeI CTNAG 4 cut(s) 484, 1211, 1632, 1641
DpnI GATC 5 cut(s) 710, 1110, 1419, 1485, 1572
DpnII GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
DraI TTTAAA 1 cut(s) 1120
Eam1104I CTCTTC 3 cut(s) 1204, 1241, 1388
EarI CTCTTC 3 cut(s) 1204, 1241, 1388
Eco130I CCWWGG 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 1238
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 657, 1646
Eco57I CTGAAG 2 cut(s) 953, 1242
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 657
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 5 cut(s) 181, 709, 1315, 1490, 1577
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 1027, 1059
FaqI GGGAC 3 cut(s) 242, 1446, 1659
FatI CATG 5 cut(s) 177, 705, 1311, 1486, 1573
FauI CCCGC 1 cut(s) 1276
FauNDI CATATG 2 cut(s) 439, 776
FbaI TGATCA 2 cut(s) 1483, 1570
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 624, 848, 1041
FokI GGATG 1 cut(s) 971
Fsp4HI GCNGC 3 cut(s) 624, 848, 1041
FspBI CTAG 6 cut(s) 395, 447, 759, 819, 947, 1587
GluI GCNGC 3 cut(s) 624, 848, 1041
GsuI CTGGAG 2 cut(s) 315, 1269
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 59
Hin1II CATG 5 cut(s) 181, 709, 1315, 1490, 1577
HincII GTYRAC 3 cut(s) 10, 595, 837
HindII GTYRAC 3 cut(s) 10, 595, 837
HindIII AAGCTT 2 cut(s) 965, 1222
HpaII CCGG 1 cut(s) 330
HphI GGTGA 6 cut(s) 157, 575, 878, 1149, 1488, 1575
Hpy166II GTNNAC 8 cut(s) 10, 175, 595, 670, 837, 874, 928, 1550
Hpy188I TCNGA 9 cut(s) 49, 87, 216, 279, 972, 1327, 1333, 1422, 1509
Hpy188III TCNNGA 5 cut(s) 883, 911, 956, 1169, 1189
Hpy8I GTNNAC 8 cut(s) 10, 175, 595, 670, 837, 874, 928, 1550
Hpy99I CGWCG 2 cut(s) 11, 53
HpyAV CCTTC 3 cut(s) 20, 195, 908
HpyCH4III ACNGT 4 cut(s) 841, 862, 1028, 1208
HpyCH4IV ACGT 2 cut(s) 6, 900
HpyCH4V TGCA 4 cut(s) 154, 551, 997, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 1221, 1253
HpyF3I CTNAG 4 cut(s) 484, 1211, 1632, 1641
HpySE526I ACGT 2 cut(s) 6, 900
Hsp92II CATG 5 cut(s) 181, 709, 1315, 1490, 1577
Ksp22I TGATCA 2 cut(s) 1483, 1570
Kzo9I GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
LguI GCTCTTC 1 cut(s) 1388
LmnI GCTCC 5 cut(s) 352, 736, 855, 1433, 1520
Lsp1109I GCAGC 3 cut(s) 610, 859, 1027
LweI GCATC 2 cut(s) 610, 1006
MaeI CTAG 6 cut(s) 395, 447, 759, 819, 947, 1587
MaeII ACGT 2 cut(s) 6, 900
MaeIII GTNAC 6 cut(s) 145, 180, 433, 578, 1358, 1581
MalI GATC 5 cut(s) 710, 1110, 1419, 1485, 1572
MboI GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
MhlI GDGCHC 3 cut(s) 795, 1289, 1472
MluCI AATT 7 cut(s) 120, 422, 979, 1011, 1428, 1515, 1607
MlyI GAGTC 2 cut(s) 1468, 1555
MmeI TCCRAC 4 cut(s) 72, 877, 1136, 1227
MseI TTAA 6 cut(s) 243, 405, 824, 1119, 1316, 1367
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 1170
MwoI GCNNNNNNNGC 2 cut(s) 1221, 1253
NciI CCSGG 1 cut(s) 330
NdeI CATATG 2 cut(s) 439, 776
NdeII GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
NlaIII CATG 5 cut(s) 181, 709, 1315, 1490, 1577
NlaIV GGNNCC 1 cut(s) 1647
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 4 cut(s) 145, 433, 1358, 1581
NruI TCGCGA 1 cut(s) 1170
NspI RCATGY 2 cut(s) 181, 1315
NspV TTCGAA 1 cut(s) 73
PciI ACATGT 2 cut(s) 177, 1311
PciSI GCTCTTC 1 cut(s) 1388
PfeI GAWTC 8 cut(s) 75, 274, 364, 391, 692, 1154, 1328, 1337
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 3 cut(s) 625, 849, 1042
PleI GAGTC 2 cut(s) 1467, 1554
PpsI GAGTC 2 cut(s) 1467, 1554
PpuMI RGGWCCY 1 cut(s) 657
PscI ACATGT 2 cut(s) 177, 1311
PshAI GACNNNNGTC 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 900
Psp5II RGGWCCY 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 1647
PspPI GGNCC 2 cut(s) 657, 1646
PspPPI RGGWCCY 1 cut(s) 657
PstNI CAGNNNCTG 2 cut(s) 695, 1631
RruI TCGCGA 1 cut(s) 1170
RsaI GTAC 4 cut(s) 5, 206, 1021, 1567
RsaNI GTAC 4 cut(s) 4, 205, 1020, 1566
RseI CAYNNNNRTG 1 cut(s) 710
SalI GTCGAC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 1388
SaqAI TTAA 6 cut(s) 243, 405, 824, 1119, 1316, 1367
SatI GCNGC 3 cut(s) 624, 848, 1041
Sau3AI GATC 5 cut(s) 708, 1108, 1417, 1483, 1570
Sau96I GGNCC 2 cut(s) 657, 1646
SchI GAGTC 2 cut(s) 1468, 1555
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 3 cut(s) 795, 1289, 1472
SfaNI GCATC 2 cut(s) 610, 1006
SfuI TTCGAA 1 cut(s) 73
SinI GGWCC 2 cut(s) 657, 1646
SmiMI CAYNNNNRTG 1 cut(s) 710
Sse9I AATT 7 cut(s) 120, 422, 979, 1011, 1428, 1515, 1607
SsiI CCGC 2 cut(s) 626, 1283
SspMI CTAG 6 cut(s) 395, 447, 759, 819, 947, 1587
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 4 cut(s) 841, 862, 1028, 1208
TaiI ACGT 2 cut(s) 9, 903
TaqI TCGA 4 cut(s) 9, 73, 1000, 1091
TasI AATT 7 cut(s) 120, 422, 979, 1011, 1428, 1515, 1607
TatI WGTACW 1 cut(s) 1019
TfiI GAWTC 8 cut(s) 75, 274, 364, 391, 692, 1154, 1328, 1337
Tru1I TTAA 6 cut(s) 243, 405, 824, 1119, 1316, 1367
Tru9I TTAA 6 cut(s) 243, 405, 824, 1119, 1316, 1367
TscAI CASTG 2 cut(s) 330, 820
TseFI GTSAC 4 cut(s) 145, 433, 1358, 1581
TseI GCWGC 3 cut(s) 623, 847, 1040
Tsp45I GTSAC 4 cut(s) 145, 433, 1358, 1581
TspDTI ATGAA 6 cut(s) 157, 177, 435, 1065, 1314, 1329
TspRI CASTG 2 cut(s) 330, 820
Van91I CCANNNNNTGG 1 cut(s) 863
VpaK11BI GGWCC 2 cut(s) 657, 1646
XagI CCTNNNNNAGG 1 cut(s) 189
XapI RAATTY 1 cut(s) 422
XceI RCATGY 2 cut(s) 181, 1315
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 6 cut(s) 395, 447, 759, 819, 947, 1587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.