Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

43969388 .. 44006630

Gene Structure 37243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2796 bp

ATGGGTGAAGTTACAAAAGCAGATATTGAAGCTCTTACAACAGCGTTTACCGCTGCCTTCAACTCCCGGTTTGTGCTCGAGTGGTTGAAGGCTGAGTTTGTGTACAAGAGGTCGAGGGATCTTTTGGGGGAAAGGCTAAGAAGTTTGGAGATCGAGGAGAAGAAGGTGAAGAACACAACTATTCAAGTGAATGTGGGGGTTATTCTTGACTTTGATACAGGGAGCAAAATAACTGATAAGTTTTATTGGAGTTGCATGAATCTGGCCCTCTCAGACTTCTATGCATCCAATCGTCACTACAAGACTAGGCTAGTTTTGCTCCCAGGAAACTCCAAAGGAAATGTTGTTGGTGCGGCTGCTGCAGCTCTAGATCTGATAAACAATGCACAAGTCCAAGCAATCATAGGGCCTGTAACATCAATGCAGGCAAACTTCGTTGTTAATGTGGGAGACCGAGCTCAAGGAATCATACCGTTTCTAATCGATGCCTTGCAAGCAGTTGAAGCTCATGTTCCCCACAGAAGTGTAGTTTCCCAATCAGCCACTGATGATCAAATTGAAATTGAGCTTAACAGGTTAAAAGGGTTGCCAACTAGAGTCTTCATTGTGCATATGAATCCTCATCTGTGCTCCAGGCTATTTGCCAGGGCAAAAAAGATTGGAATGGTGAGTGATGGTTATGTTTGGATCATTGCTAGTGGGATATCTAATCGTTTAAGTTTGATGAAACATTCACACATAAATTCCATGGAAGGTGTGTTAGGTATACAAACATACATTCCAAGAACACTAAAGCTTAGACAATTTGAAAAGCGGTGGAAAATGAAATTCCAACAAGAGAATCCAAACGTAACTAAGATTAAGTTGGATGTTTACGGATTTCAAGCTCATGATGCCGTCTTTGCACTAGCTATGGCAGTCGAACAAGTTGGATATACAAGCATTGAATATCAAAAGCCAAGTGATTCCTTCAAGGCAACAGATCTTGATGCCCTTAAGGTATCTCAGTATGGTCAAAAACTTGTTGGAGCCCTGTCTGGTATTAGATTTGAAGGTTTAGCTGGAGATTTCAATGTCGTAGAAGGGGAGCTTCAGTCATCAACTTATAACATAATTAATGTAATTGGTGGTAAAGCAAAGGAAATTGCGTTGTGGACTCCAGAAAAAGGAATGGTTGTTCCAACAAACACAAGCAAAATCTTTACTAATTCCAAGTGCATTTTTGGACCCATTAAGTGGCCCGGTGAACCTATCTGTGTTCCTAGAGGATGGGAGATCCCAACTAATGGAAATAAGTTGAAAATAGGTGTTCCTGTCAAGAAAGGTTTTAAAGAGTTTGTTAGGATCACGAAAGATCCTAATACTAACACAACGACTGTCACAGGGTTCTGTATTGATGTCTTCCTTGCAGCAGTGAAATTATTACCATATGATCTTCCTCATGTTTTCATTCCCTATGAAAATCCTGATGGGTCCATGGCTGGGACTTATGATGATTTGGTCTATCAAGTATATCTCGAGAAATTTGATGCTGTTGTTGGAGATACAACAATTAGAGCAAACAGATCCTTGTATGTTGACTTTACAATGCCATACATTAAATCTGATGTAGGAATGGTTGTGCCAATCAGAGACAGCACACGGAAAAATGCATGGATTTTCATGAAGCCTTTGACATGGGGCCTTTGGTCGACAACTTTGTGTTTCTTTATCTTTATTGGTTTTGTTGTTTGGGTATTGGAACATCGAGTTAATGAAGATTTTCGGGGTCCTCCTTCACATCAAGTTGGAACAAGCTTCTGGTTTTCTTTCTCAACCATGGTTTTTGCACATAGGGAGAGAGTGGTCAGTAACTTGGCTAGATTTGTGATGACTATATGGGTATTTGTTATGCTCATAGTGACACAAAGTTACACAGCTAGTCTATCATCACTATTAACAGTCCAACAACTCATGCCGACTGTTACTGACTTAAGTGATCTTTTAAGGAATGGCGATGATGTCGGCTACATCGAGAATGCCTTTGTTCGTGAGGTCTTGTATGAAATAGGTTTTAATAATACCAGGCTCAGGGTTATTAAATCCGCGGAAGATGGTGATAAAGAGCTCACAAAAGGTACTACAAAGGGTGGTATTGCTGCTTTTGTTGGCGGAACGCCAACGTTGAAGGCTTTTGTTGCAAAGTACTGCTCCAAATACACTATGATTGGACCTATCTCCAAAACTAATGGGTTTGCTTTCGTGTTCCCTAAACGTTCACCTCTTGTAGCTGATATGTCAAGCGCAATCCTAAATTTGACCGAAGGAAAGGAGATTCTGAATCTTGAAGCCACTTGGCTAGGGAACGAAAGCATTTGTCAAGGCTCAAGTTCTGCCAATATATCTGGCAACAGTCTTGGCCTTGAGAGCTTTTGGGGACTATTCCTCATTGCTGGAGTCGCTTCTGTATTAGCTCTCATCATATTTTTTGCTTCCTTCCTTTACGAGCATAAGCATGTCTTGATGCCCCCTAATTCAAGAGCTTCCATATGGAGAAGGATTCATGCCTTAATTGAAATTTTTGATGATAGAGATGCCAGCTCTTATACTTTCAGAAGCAGTCAACCGTCTAATAAAATCATTAGTGTTGGCGATCATGGACCGAATGCGTCACCGATTAGCAACTGGCCAGAAAGCCCCTTCAGCTATACAAACCATGGAGATCTTGACTCTGTATTTGGAGGTCAACAAACACCAGCTACAGGTGGAGCATCTCCGGAACCAGTTCCAACAATTGAGCTTGCTATCACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

931

Amino Acids

103.23

Weight (kDa)

8.47

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	85 - 153	1e-07	Receptor family ligand binding region
ANF_receptor	PF01094	150 - 376	3.7e-35	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	453 - 541	1e-06	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	560 - 814	5.7e-38	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1107
AccB7I	CCANNNNNTGG	2 cut(s)	1236, 1286
AccI	GTMKAC	2 cut(s)	766, 1691
AccII	CGCG	1 cut(s)	2087
AccIII	TCCGGA	1 cut(s)	2755
AciI	CCGC	6 cut(s)	51, 353, 814, 2085, 2087, 2151
AclI	AACGTT	2 cut(s)	2162, 2254
AclWI	GGATC	6 cut(s)	126, 695, 1270, 1349, 1352, 1560
AcoI	YGGCCR	1 cut(s)	2666
AcsI	RAATTY	5 cut(s)	742, 827, 1523, 2293, 2556
AcuI	CTGAAG	2 cut(s)	1076, 2665
AfaI	GTAC	3 cut(s)	104, 2119, 2186
AfiI	CCNNNNNNNGG	6 cut(s)	1166, 1236, 1286, 1482, 2070, 2741
AflII	CTTAAG	2 cut(s)	995, 1972
AjnI	CCWGG	4 cut(s)	322, 632, 644, 2063
AleI	CACNNNNGTG	1 cut(s)	522
AloI	GAACNNNNNNTCC	2 cut(s)	1161, 1193
Alw21I	GWGCWC	4 cut(s)	78, 460, 632, 2109
Alw26I	GTCTC	2 cut(s)	444, 1626
AlwI	GGATC	6 cut(s)	126, 695, 1270, 1349, 1352, 1560
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	2 cut(s)	77, 1517
Aor13HI	TCCGGA	1 cut(s)	2755
AoxI	GGCC	6 cut(s)	264, 407, 1238, 1681, 2398, 2666
ApeKI	GCWGC	6 cut(s)	53, 356, 359, 362, 1409, 2138
ApoI	RAATTY	5 cut(s)	742, 827, 1523, 2293, 2556
ArsI	GACNNNNNNTTYG	2 cut(s)	2699, 2731
AseI	ATTAAT	1 cut(s)	1116
Asp700I	GAANNNNTTC	2 cut(s)	1761, 2763
AspLEI	GCGC	1 cut(s)	2285
AspS9I	GGNCC	9 cut(s)	265, 407, 1226, 1239, 1473, 1681, 1769, 2210, 2639
AsuC2I	CCSGG	2 cut(s)	67, 1242
AsuHPI	GGTGA	7 cut(s)	17, 178, 679, 1256, 2108, 2250, 2643
AvaI	CYCGRG	2 cut(s)	77, 1517
AvaII	GGWCC	5 cut(s)	1226, 1473, 1769, 2210, 2639
BalI	TGGCCA	1 cut(s)	2668
BanII	GRGCYC	3 cut(s)	460, 1033, 2109
BbsI	GAAGAC	2 cut(s)	592, 1393
Bbv12I	GWGCWC	4 cut(s)	78, 460, 632, 2109
BbvI	GCAGC	6 cut(s)	40, 343, 346, 374, 1421, 2125
BccI	CCATC	4 cut(s)	668, 1263, 1463, 2087
BceAI	ACGGC	1 cut(s)	881
BciT130I	CCWGG	4 cut(s)	324, 634, 646, 2065
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	2 cut(s)	67, 1242
BcoDI	GTCTC	2 cut(s)	444, 1626
BfmI	CTRYAG	2 cut(s)	360, 2739
BfrI	CTTAAG	2 cut(s)	995, 1972
BglII	AGATCT	3 cut(s)	370, 982, 2701
BisI	GCNGC	7 cut(s)	54, 354, 357, 360, 363, 1410, 2139
BlsI	GCNGC	7 cut(s)	55, 355, 358, 361, 364, 1411, 2140
BmcAI	AGTACT	1 cut(s)	2186
Bme1390I	CCNGG	6 cut(s)	67, 324, 634, 646, 1242, 2065
Bme18I	GGWCC	5 cut(s)	1226, 1473, 1769, 2210, 2639
BmeT110I	CYCGRG	2 cut(s)	77, 1517
BmgT120I	GGNCC	9 cut(s)	265, 407, 1226, 1239, 1473, 1681, 1769, 2210, 2639
BmiI	GGNNCC	6 cut(s)	1030, 1228, 1474, 1682, 1770, 2760
BmrFI	CCNGG	6 cut(s)	67, 324, 634, 646, 1242, 2065
BmsI	GCATC	8 cut(s)	293, 475, 883, 979, 1519, 2493, 2563, 2759
BpiI	GAAGAC	2 cut(s)	592, 1393
BpmI	CTGGAG	4 cut(s)	616, 1083, 1143, 2454
Bpu10I	CCTNAGC	1 cut(s)	2069
BpuEI	CTTGAG	3 cut(s)	444, 2350, 2423
BpuMI	CCSGG	2 cut(s)	67, 1242
Bsa29I	ATCGAT	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	7 cut(s)	322, 645, 747, 1476, 1818, 2085, 2695
BsaWI	WCCGGW	1 cut(s)	2755
BsaXI	ACNNNNNCTCC	2 cut(s)	1079, 1109
Bsc4I	CCNNNNNNNGG	6 cut(s)	1166, 1236, 1286, 1482, 2070, 2741
Bse1I	ACTGG	2 cut(s)	2669, 2762
Bse3DI	GCAATG	2 cut(s)	690, 2427
BseAI	TCCGGA	1 cut(s)	2755
BseBI	CCWGG	4 cut(s)	324, 634, 646, 2065
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	7 cut(s)	322, 645, 747, 1476, 1818, 2085, 2695
BseGI	GGATG	3 cut(s)	284, 874, 1274
BseLI	CCNNNNNNNGG	6 cut(s)	1166, 1236, 1286, 1482, 2070, 2741
BseMI	GCAATG	2 cut(s)	690, 2427
BseMII	CTCAG	4 cut(s)	84, 285, 1019, 2083
BseNI	ACTGG	2 cut(s)	2669, 2762
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	6 cut(s)	40, 343, 346, 374, 1421, 2125
BseYI	CCCAGC	1 cut(s)	1481
Bsh1236I	CGCG	1 cut(s)	2087
BshFI	GGCC	6 cut(s)	266, 409, 1240, 1683, 2400, 2668
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	4 cut(s)	78, 460, 632, 2109
BsiHKCI	CYCGRG	2 cut(s)	77, 1517
BsiSI	CCGG	3 cut(s)	67, 1242, 2756
BslFI	GGGAC	2 cut(s)	1498, 2430
BslI	CCNNNNNNNGG	6 cut(s)	1166, 1236, 1286, 1482, 2070, 2741
BsmAI	GTCTC	2 cut(s)	444, 1626
BsmFI	GGGAC	2 cut(s)	1498, 2430
BsmI	GAATGC	2 cut(s)	2023, 2650
BsnI	GGCC	6 cut(s)	266, 409, 1240, 1683, 2400, 2668
Bso31I	GGTCTC	1 cut(s)	444
BsoBI	CYCGRG	2 cut(s)	77, 1517
Bsp1286I	GDGCHC	5 cut(s)	78, 460, 632, 1033, 2109
Bsp13I	TCCGGA	1 cut(s)	2755
Bsp1407I	TGTACA	1 cut(s)	102
Bsp19I	CCATGG	4 cut(s)	747, 1476, 1818, 2695
BspACI	CCGC	6 cut(s)	51, 353, 814, 2085, 2087, 2151
BspANI	GGCC	6 cut(s)	266, 409, 1240, 1683, 2400, 2668
BspCNI	CTCAG	4 cut(s)	85, 284, 1018, 2082
BspDI	ATCGAT	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	2755
BspFNI	CGCG	1 cut(s)	2087
BspHI	TCATGA	2 cut(s)	889, 1662
BspLI	GGNNCC	6 cut(s)	1030, 1228, 1474, 1682, 1770, 2760
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	6 cut(s)	126, 695, 1270, 1349, 1352, 1560
BspTI	CTTAAG	2 cut(s)	995, 1972
BspTNI	GGTCTC	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	690, 2427
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	2669, 2762
BssECI	CCNNGG	7 cut(s)	322, 645, 747, 1476, 1818, 2085, 2695
BssNAI	GTATAC	1 cut(s)	767
BssT1I	CCWWGG	4 cut(s)	747, 1476, 1818, 2695
Bst1107I	GTATAC	1 cut(s)	767
Bst2UI	CCWGG	4 cut(s)	324, 634, 646, 2065
Bst4CI	ACNGT	6 cut(s)	474, 1378, 1942, 1963, 2393, 2607
BstAFI	CTTAAG	2 cut(s)	995, 1972
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	426, 495, 2578, 2781
BstDEI	CTNAG	7 cut(s)	93, 137, 271, 797, 855, 1005, 2069
BstDSI	CCRYGG	5 cut(s)	747, 1476, 1818, 2085, 2695
BstF5I	GGATG	3 cut(s)	284, 874, 1274
BstFNI	CGCG	1 cut(s)	2087
BstHHI	GCGC	1 cut(s)	2285
BstMAI	GTCTC	2 cut(s)	444, 1626
BstNI	CCWGG	4 cut(s)	324, 634, 646, 2065
BstNSI	RCATGY	1 cut(s)	2498
BstSCI	CCNGG	6 cut(s)	65, 322, 632, 644, 1240, 2063
BstSFI	CTRYAG	2 cut(s)	360, 2739
BstUI	CGCG	1 cut(s)	2087
BstV1I	GCAGC	6 cut(s)	40, 343, 346, 374, 1421, 2125
BstV2I	GAAGAC	2 cut(s)	592, 1393
BstX2I	RGATCY	7 cut(s)	118, 370, 982, 1275, 1354, 1565, 2701
BstYI	RGATCY	7 cut(s)	118, 370, 982, 1275, 1354, 1565, 2701
BstZ17I	GTATAC	1 cut(s)	767
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	6 cut(s)	266, 409, 1240, 1683, 2400, 2668
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	5 cut(s)	747, 1476, 1818, 2085, 2695
BtgZI	GCGATG	1 cut(s)	2010
BtsCI	GGATG	3 cut(s)	284, 874, 1274
BtsI	GCAGTG	1 cut(s)	1419
BtsIMutI	CAGTG	2 cut(s)	543, 1419
Cac8I	GCNNGC	4 cut(s)	426, 495, 2578, 2781
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	2 cut(s)	889, 1662
CfoI	GCGC	1 cut(s)	2285
Cfr13I	GGNCC	9 cut(s)	265, 407, 1226, 1239, 1473, 1681, 1769, 2210, 2639
Cfr42I	CCGCGG	1 cut(s)	2088
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	2637
Csp6I	GTAC	3 cut(s)	103, 2118, 2185
CviQI	GTAC	3 cut(s)	103, 2118, 2185
DdeI	CTNAG	7 cut(s)	93, 137, 271, 797, 855, 1005, 2069
DraI	TTTAAA	1 cut(s)	1330
EaeI	YGGCCR	1 cut(s)	2666
EciI	GGCGGA	1 cut(s)	2166
Ecl136II	GAGCTC	2 cut(s)	458, 2107
Eco130I	CCWWGG	4 cut(s)	747, 1476, 1818, 2695
Eco24I	GRGCYC	3 cut(s)	460, 1033, 2109
Eco31I	GGTCTC	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	705
Eco47I	GGWCC	5 cut(s)	1226, 1473, 1769, 2210, 2639
Eco53kI	GAGCTC	2 cut(s)	458, 2107
Eco57I	CTGAAG	2 cut(s)	1076, 2665
Eco88I	CYCGRG	2 cut(s)	77, 1517
EcoICRI	GAGCTC	2 cut(s)	458, 2107
EcoO109I	RGGNCCY	3 cut(s)	407, 1681, 1769
EcoRII	CCWGG	4 cut(s)	322, 632, 644, 2063
EcoRV	GATATC	1 cut(s)	705
EcoT14I	CCWWGG	4 cut(s)	747, 1476, 1818, 2695
EcoT22I	ATGCAT	2 cut(s)	286, 1654
EcoT38I	GRGCYC	3 cut(s)	460, 1033, 2109
ErhI	CCWWGG	4 cut(s)	747, 1476, 1818, 2695
FalI	AAGNNNNNCTT	4 cut(s)	1074, 1106, 2483, 2515
FaqI	GGGAC	2 cut(s)	1498, 2430
FauNDI	CATATG	3 cut(s)	612, 1429, 2528
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	2 cut(s)	766, 1691
Fnu4HI	GCNGC	7 cut(s)	54, 354, 357, 360, 363, 1410, 2139
FokI	GGATG	3 cut(s)	271, 881, 1281
FriOI	GRGCYC	3 cut(s)	460, 1033, 2109
Fsp4HI	GCNGC	7 cut(s)	54, 354, 357, 360, 363, 1410, 2139
GlaI	GCGC	1 cut(s)	2284
GluI	GCNGC	7 cut(s)	54, 354, 357, 360, 363, 1410, 2139
GsaI	CCCAGC	1 cut(s)	1485
GsuI	CTGGAG	4 cut(s)	616, 1083, 1143, 2454
HaeIII	GGCC	6 cut(s)	266, 409, 1240, 1683, 2400, 2668
HapII	CCGG	3 cut(s)	67, 1242, 2756
HgaI	GACGC	1 cut(s)	2637
HhaI	GCGC	1 cut(s)	2285
Hin6I	GCGC	1 cut(s)	2283
HinP1I	GCGC	1 cut(s)	2283
HincII	GTYRAC	4 cut(s)	1579, 1692, 2603, 2726
HindII	GTYRAC	4 cut(s)	1579, 1692, 2603, 2726
HindIII	AAGCTT	2 cut(s)	794, 1795
HpaII	CCGG	3 cut(s)	67, 1242, 2756
HphI	GGTGA	7 cut(s)	17, 178, 679, 1256, 2108, 2250, 2643
Hpy188I	TCNGA	6 cut(s)	274, 375, 1606, 1631, 2319, 2594
HpyCH4III	ACNGT	6 cut(s)	474, 1378, 1942, 1963, 2393, 2607
HpyCH4IV	ACGT	3 cut(s)	849, 2162, 2254
HpyF3I	CTNAG	7 cut(s)	93, 137, 271, 797, 855, 1005, 2069
HpySE526I	ACGT	3 cut(s)	849, 2162, 2254
HspAI	GCGC	1 cut(s)	2283
Kpn2I	TCCGGA	1 cut(s)	2755
Ksp22I	TGATCA	1 cut(s)	550
KspI	CCGCGG	1 cut(s)	2088
LmnI	GCTCC	7 cut(s)	222, 324, 635, 1028, 1087, 2195, 2747
Lsp1109I	GCAGC	6 cut(s)	40, 343, 346, 374, 1421, 2125
LweI	GCATC	8 cut(s)	293, 475, 883, 979, 1519, 2493, 2563, 2759
MaeII	ACGT	3 cut(s)	849, 2162, 2254
MboII	GAAGA	7 cut(s)	172, 181, 592, 1393, 1427, 1769, 2102
MfeI	CAATTG	1 cut(s)	2772
MflI	RGATCY	7 cut(s)	118, 370, 982, 1275, 1354, 1565, 2701
MhlI	GDGCHC	5 cut(s)	78, 460, 632, 1033, 2109
MlsI	TGGCCA	1 cut(s)	2668
MluNI	TGGCCA	1 cut(s)	2668
MlyI	GAGTC	4 cut(s)	606, 1150, 2445, 2702
MmeI	TCCRAC	9 cut(s)	846, 856, 910, 1006, 1205, 1519, 1768, 1969, 2792
Mox20I	TGGCCA	1 cut(s)	2668
Mph1103I	ATGCAT	2 cut(s)	286, 1654
MroI	TCCGGA	1 cut(s)	2755
MroXI	GAANNNNTTC	2 cut(s)	1761, 2763
MscI	TGGCCA	1 cut(s)	2668
MslI	CAYNNNNRTG	2 cut(s)	522, 2493
Msp20I	TGGCCA	1 cut(s)	2668
MspA1I	CMGCKG	2 cut(s)	53, 2087
MspCI	CTTAAG	2 cut(s)	995, 1972
MspI	CCGG	3 cut(s)	67, 1242, 2756
MspR9I	CCNGG	6 cut(s)	67, 324, 634, 646, 1242, 2065
MunI	CAATTG	1 cut(s)	2772
Mva1269I	GAATGC	2 cut(s)	2023, 2650
MvaI	CCWGG	4 cut(s)	324, 634, 646, 2065
MvnI	CGCG	1 cut(s)	2087
NciI	CCSGG	2 cut(s)	67, 1242
NcoI	CCATGG	4 cut(s)	747, 1476, 1818, 2695
NdeI	CATATG	3 cut(s)	612, 1429, 2528
NlaIV	GGNNCC	6 cut(s)	1030, 1228, 1474, 1682, 1770, 2760
NmuCI	GTSAC	4 cut(s)	293, 1378, 1900, 2649
NsiI	ATGCAT	2 cut(s)	286, 1654
NspI	RCATGY	1 cut(s)	2498
OliI	CACNNNNGTG	1 cut(s)	522
PaeR7I	CTCGAG	2 cut(s)	77, 1517
PagI	TCATGA	2 cut(s)	889, 1662
PcsI	WCGNNNNNNNCGW	1 cut(s)	2010
PctI	GAATGC	2 cut(s)	2023, 2650
PdmI	GAANNNNTTC	2 cut(s)	1761, 2763
PfeI	GAWTC	8 cut(s)	259, 465, 616, 841, 965, 2314, 2320, 2539
PflMI	CCANNNNNTGG	2 cut(s)	1236, 1286
PkrI	GCNGC	7 cut(s)	55, 355, 358, 361, 364, 1411, 2140
PleI	GAGTC	4 cut(s)	605, 1150, 2444, 2702
PpsI	GAGTC	4 cut(s)	605, 1150, 2444, 2702
PpuMI	RGGWCCY	1 cut(s)	1769
PshBI	ATTAAT	1 cut(s)	1116
PsiI	TTATAA	1 cut(s)	1107
Psp124BI	GAGCTC	2 cut(s)	460, 2109
Psp1406I	AACGTT	2 cut(s)	2162, 2254
Psp5II	RGGWCCY	1 cut(s)	1769
Psp6I	CCWGG	4 cut(s)	322, 632, 644, 2063
PspFI	CCCAGC	1 cut(s)	1481
PspGI	CCWGG	4 cut(s)	322, 632, 644, 2063
PspN4I	GGNNCC	6 cut(s)	1030, 1228, 1474, 1682, 1770, 2760
PspPI	GGNCC	9 cut(s)	265, 407, 1226, 1239, 1473, 1681, 1769, 2210, 2639
PspPPI	RGGWCCY	1 cut(s)	1769
PspXI	VCTCGAGB	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	7 cut(s)	118, 370, 982, 1275, 1354, 1565, 2701
RsaI	GTAC	3 cut(s)	104, 2119, 2186
RsaNI	GTAC	3 cut(s)	103, 2118, 2185
RseI	CAYNNNNRTG	2 cut(s)	522, 2493
SacI	GAGCTC	2 cut(s)	460, 2109
SacII	CCGCGG	1 cut(s)	2088
SalI	GTCGAC	1 cut(s)	1690
SatI	GCNGC	7 cut(s)	54, 354, 357, 360, 363, 1410, 2139
Sau96I	GGNCC	9 cut(s)	265, 407, 1226, 1239, 1473, 1681, 1769, 2210, 2639
ScaI	AGTACT	1 cut(s)	2186
SchI	GAGTC	4 cut(s)	606, 1150, 2445, 2702
ScrFI	CCNGG	6 cut(s)	67, 324, 634, 646, 1242, 2065
SduI	GDGCHC	5 cut(s)	78, 460, 632, 1033, 2109
SfaNI	GCATC	8 cut(s)	293, 475, 883, 979, 1519, 2493, 2563, 2759
SfcI	CTRYAG	2 cut(s)	360, 2739
Sfr274I	CTCGAG	2 cut(s)	77, 1517
Sfr303I	CCGCGG	1 cut(s)	2088
SgrBI	CCGCGG	1 cut(s)	2088
SinI	GGWCC	5 cut(s)	1226, 1473, 1769, 2210, 2639
SlaI	CTCGAG	2 cut(s)	77, 1517
SmiMI	CAYNNNNRTG	2 cut(s)	522, 2493
SmlI	CTYRAG	7 cut(s)	77, 459, 995, 1517, 1972, 2365, 2402
SmoI	CTYRAG	7 cut(s)	77, 459, 995, 1517, 1972, 2365, 2402
SsiI	CCGC	6 cut(s)	51, 353, 814, 2085, 2087, 2151
SstI	GAGCTC	2 cut(s)	460, 2109
StyD4I	CCNGG	6 cut(s)	65, 322, 632, 644, 1240, 2063
StyI	CCWWGG	4 cut(s)	747, 1476, 1818, 2695
TaaI	ACNGT	6 cut(s)	474, 1378, 1942, 1963, 2393, 2607
TaiI	ACGT	3 cut(s)	852, 2165, 2257
TaqI	TCGA	9 cut(s)	78, 113, 153, 483, 921, 1518, 1691, 1747, 2013
TaqII	GACCGA	3 cut(s)	468, 2315, 2656
TatI	WGTACW	2 cut(s)	102, 2184
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	8 cut(s)	259, 465, 616, 841, 965, 2314, 2320, 2539
TscAI	CASTG	2 cut(s)	550, 1419
TseFI	GTSAC	4 cut(s)	293, 1378, 1900, 2649
TseI	GCWGC	6 cut(s)	53, 356, 359, 362, 1409, 2138
Tsp45I	GTSAC	4 cut(s)	293, 1378, 1900, 2649
TspGWI	ACGGA	2 cut(s)	891, 1657
TspRI	CASTG	2 cut(s)	550, 1419
Van91I	CCANNNNNTGG	2 cut(s)	1236, 1286
Vha464I	CTTAAG	2 cut(s)	995, 1972
VpaK11BI	GGWCC	5 cut(s)	1226, 1473, 1769, 2210, 2639
VspI	ATTAAT	1 cut(s)	1116
XapI	RAATTY	5 cut(s)	742, 827, 1523, 2293, 2556
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	2498
XhoI	CTCGAG	2 cut(s)	77, 1517
XmiI	GTMKAC	2 cut(s)	766, 1691
XmnI	GAANNNNTTC	2 cut(s)	1761, 2763
ZrmI	AGTACT	1 cut(s)	2186
Zsp2I	ATGCAT	2 cut(s)	286, 1654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.