RchiOBHm_Chr6g0269771

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
27197728 .. 27202406
4679 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24199

Sequence Viewer

Length: 606 bp
ATGAAGGTTAATTATGTGGTAGGATCCTACCTTGATCCCCTTACAGTTAAGGTGTTCCCTAAAGGTTCATCTCTTGTAGCTGATATGTCAAGCGCAATCCTAAATGTGACCGAAGGAAAGAGTATTCTAAAGATTGAGGCCAATTGGATTGAGAAAGAAAGAAATTGTCAAGACTCAAGTTCCGGCAATATCTCTGGCAACAGTCTTGGCCTTGATAGCTTTTGGGGACTATTCCTTATTGCCGGGGTTGCTTGTGTATTCGCTCTCATCATATTTTTTACTTCCTTCCTTTACAAGCATAAGCATGTCTTGATGCCCCCTGATTCAACAGCTTCTACCTGGAGAAGGATTCGTGCCATATTTGAAACTTTTGATGATAGAGATGCCAGCTATTATACTTCTAGAAGTAGTCAACAGTCGAAAAAATTTACTGGTGTTGGCCATCATGGACTGGATGCATCACAGACTAGCAACTGGCCGGAAAGTCCGTTCAGCTATACAAACCATAGAGATCTTGATTCTGTATTTGGAGGTCAACAAACACCATCTACTGCTGGAGTATCTCCGGAACCAGTTCAAACTATTAAGCTTGCTATTACTATTTAA

Protein Analysis

201

Amino Acids

22.12

Weight (kDa)

6.96

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 565
AclWI GGATC 3 cut(s) 18, 29, 31
AcoI YGGCCR 2 cut(s) 439, 476
AcsI RAATTY 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 327, 365, 578
AjnI CCWGG 1 cut(s) 338
AloI GAACNNNNNNTCC 2 cut(s) 473, 505
AluBI AGCT 6 cut(s) 80, 219, 332, 390, 495, 589
AluI AGCT 6 cut(s) 80, 219, 332, 390, 495, 589
AlwI GGATC 3 cut(s) 18, 29, 31
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 4 cut(s) 138, 208, 439, 476
ApoI RAATTY 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 1 cut(s) 95
AsuC2I CCSGG 1 cut(s) 244
BalI TGGCCA 1 cut(s) 441
BamHI GGATCC 1 cut(s) 23
BccI CCATC 2 cut(s) 450, 553
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 2 cut(s) 402, 468
BglII AGATCT 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 244, 340
BmiI GGNNCC 2 cut(s) 25, 570
BmrFI CCNGG 2 cut(s) 244, 340
BmsI GCATC 4 cut(s) 303, 373, 445, 467
BpmI CTGGAG 2 cut(s) 361, 576
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 565
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 4 cut(s) 436, 456, 479, 572
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 1 cut(s) 345
BseNI ACTGG 4 cut(s) 436, 456, 479, 572
BshFI GGCC 4 cut(s) 140, 210, 441, 478
BsiSI CCGG 4 cut(s) 183, 243, 479, 566
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 4 cut(s) 140, 210, 441, 478
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 3 cut(s) 23, 34, 511
BspANI GGCC 4 cut(s) 140, 210, 441, 478
BspEI TCCGGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 25, 570
BspPI GGATC 3 cut(s) 18, 29, 31
BsrI ACTGG 4 cut(s) 436, 456, 479, 572
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 3 cut(s) 23, 34, 511
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 3 cut(s) 46, 203, 417
BstC8I GCNNGC 2 cut(s) 388, 591
BstENI CCTNNNNNAGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 26, 37, 514
BstMBI GATC 3 cut(s) 23, 34, 511
BstMWI GCNNNNNNNGC 2 cut(s) 216, 248
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 242, 338
BstX2I RGATCY 2 cut(s) 23, 511
BstYI RGATCY 2 cut(s) 23, 511
BsuRI GGCC 4 cut(s) 140, 210, 441, 478
BtsCI GGATG 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 388, 591
CfoI GCGC 1 cut(s) 95
CviAII CATG 2 cut(s) 305, 446
DpnI GATC 3 cut(s) 25, 36, 513
DpnII GATC 3 cut(s) 23, 34, 511
EaeI YGGCCR 2 cut(s) 439, 476
EcoNI CCTNNNNNAGG 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 460
FaeI CATG 2 cut(s) 308, 449
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 304, 445
FokI GGATG 1 cut(s) 467
FspBI CTAG 2 cut(s) 402, 468
GlaI GCGC 1 cut(s) 94
GsuI CTGGAG 2 cut(s) 361, 576
HaeIII GGCC 4 cut(s) 140, 210, 441, 478
HapII CCGG 4 cut(s) 183, 243, 479, 566
HhaI GCGC 1 cut(s) 95
Hin1II CATG 2 cut(s) 308, 449
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 2 cut(s) 413, 536
HindII GTYRAC 2 cut(s) 413, 536
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 4 cut(s) 173, 323, 349, 518
HpaII CCGG 4 cut(s) 183, 243, 479, 566
Hpy166II GTNNAC 2 cut(s) 413, 536
Hpy188III TCNNGA 5 cut(s) 170, 310, 402, 515, 566
Hpy8I GTNNAC 2 cut(s) 413, 536
HpyAV CCTTC 3 cut(s) 107, 295, 339
HpyCH4III ACNGT 3 cut(s) 46, 203, 417
HpyCH4V TGCA 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 248
Hsp92II CATG 2 cut(s) 308, 449
HspAI GCGC 1 cut(s) 93
Kpn2I TCCGGA 1 cut(s) 565
Kzo9I GATC 3 cut(s) 23, 34, 511
LweI GCATC 4 cut(s) 303, 373, 445, 467
MaeI CTAG 2 cut(s) 402, 468
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 25, 36, 513
MboI GATC 3 cut(s) 23, 34, 511
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 2 cut(s) 23, 511
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 4 cut(s) 10, 142, 163, 425
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 2 cut(s) 130, 524
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 460
MroI TCCGGA 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 573
MscI TGGCCA 1 cut(s) 441
MseI TTAA 4 cut(s) 9, 48, 585, 604
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 4 cut(s) 183, 243, 479, 566
MspR9I CCNGG 2 cut(s) 244, 340
MunI CAATTG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 216, 248
NciI CCSGG 1 cut(s) 244
NdeII GATC 3 cut(s) 23, 34, 511
NlaIII CATG 2 cut(s) 308, 449
NlaIV GGNNCC 2 cut(s) 25, 570
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 323, 349, 518
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 25, 570
PsuI RGATCY 2 cut(s) 23, 511
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 4 cut(s) 9, 48, 585, 604
Sau3AI GATC 3 cut(s) 23, 34, 511
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 244, 340
SfaNI GCATC 4 cut(s) 303, 373, 445, 467
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 4 cut(s) 10, 142, 163, 425
SspMI CTAG 2 cut(s) 402, 468
StyD4I CCNGG 2 cut(s) 242, 338
TaaI ACNGT 3 cut(s) 46, 203, 417
TaqI TCGA 1 cut(s) 419
TaqII GACCGA 1 cut(s) 125
TasI AATT 4 cut(s) 10, 142, 163, 425
TfiI GAWTC 3 cut(s) 323, 349, 518
Tru1I TTAA 4 cut(s) 9, 48, 585, 604
Tru9I TTAA 4 cut(s) 9, 48, 585, 604
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 17, 57
TspGWI ACGGA 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 343
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 2 cut(s) 402, 468
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.