Rh6CG512900

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
67180766 .. 67181269
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG512900.1

Sequence Viewer

Length: 504 bp
ATGGATAAAATCGAGGACAAGTGGTACAAGAAACAAGCAACTTGTTCAGACCCCAACACCACAAGTTCTTCCAACAGTCTTACTCTTAGCCTTGATAGCTTTCGGGGCCTCTTCATTGTTGCTGGGTTTGCTTCATCATTAGCTCTCCTCATATGTGCAGCCATGTTCTTCCATGAACACAGGCACACTTTGACGAGCTTTGATCCAGAAACCACTTTTTGGAGTAGAATTCGTGTCGTATTGAGATTGTATGACCAAAGGGACCCCAATTGGGATACTTATAACGGGAGACAGCTGCAAGATTCAGTTCATGGTATAATAGGTGCTGTTGAACCCTCACCAAACACCAACTCTCCCCCAAGGCCATCAAGCGCCAACACTGAATCACGCATTGTTATTGAAGAGCTGGGAATGCCTCCTGCTGACACTGGGCTTGGTGACTTGAATGAGTTGAATCCCAGTGGTCAAATAACTCAAGAGAGATTGAAAATGCAGTTGAGTTAA

Protein Analysis

167

Amino Acids

18.66

Weight (kDa)

5.3

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AccB7I CCANNNNNTGG 1 cut(s) 219
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 219, 271
AgsI TTSAA 5 cut(s) 332, 401, 445, 454, 487
AluBI AGCT 5 cut(s) 99, 143, 198, 295, 406
AluI AGCT 5 cut(s) 99, 143, 198, 295, 406
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 197
AoxI GGCC 2 cut(s) 106, 362
ApeKI GCWGC 2 cut(s) 158, 295
ApoI RAATTY 1 cut(s) 228
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 106, 262
AsuHPI GGTGA 2 cut(s) 330, 449
AvaII GGWCC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 170, 282
BccI CCATC 1 cut(s) 373
BciVI GTATCC 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 283
BfoI RGCGCY 1 cut(s) 375
BfuI GTATCC 1 cut(s) 268
BisI GCNGC 2 cut(s) 159, 296
BlsI GCNGC 2 cut(s) 160, 297
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 106, 262
BmiI GGNNCC 3 cut(s) 107, 263, 264
BmrI ACTGGG 2 cut(s) 438, 453
BmuI ACTGGG 2 cut(s) 438, 453
BpuEI CTTGAG 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 271
Bse1I ACTGG 2 cut(s) 433, 459
BseDI CCNNGG 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 219, 271
BseNI ACTGG 2 cut(s) 433, 459
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 170, 282
BseYI CCCAGC 2 cut(s) 122, 406
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 2 cut(s) 108, 364
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 219, 271
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 2 cut(s) 108, 364
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 2 cut(s) 108, 364
BspLI GGNNCC 3 cut(s) 107, 263, 264
BspPI GGATC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 396
BsrI ACTGG 2 cut(s) 433, 459
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 116, 396
BstDEI CTNAG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 4 cut(s) 96, 105, 128, 412
BstV1I GCAGC 2 cut(s) 170, 282
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 108, 364
BtsIMutI CAGTG 3 cut(s) 378, 426, 466
CfoI GCGC 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 106, 262
Csp6I GTAC 1 cut(s) 25
CviAII CATG 3 cut(s) 163, 173, 311
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 116, 396
EarI CTCTTC 2 cut(s) 116, 396
Eco130I CCWWGG 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 106, 262
EcoRI GAATTC 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 3 cut(s) 166, 176, 314
FaiI YATR 8 cut(s) 152, 154, 164, 174, 252, 282, 312, 317
FaqI GGGAC 1 cut(s) 275
FatI CATG 3 cut(s) 162, 172, 310
FauNDI CATATG 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 159, 296
Fsp4HI GCNGC 2 cut(s) 159, 296
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 159, 296
GsaI CCCAGC 2 cut(s) 126, 410
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 2 cut(s) 108, 364
HhaI GCGC 1 cut(s) 374
Hin1II CATG 3 cut(s) 166, 176, 314
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 3 cut(s) 302, 383, 454
HphI GGTGA 2 cut(s) 330, 449
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 206, 476
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 158, 298, 493
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 105, 128, 412
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 3 cut(s) 166, 176, 314
HspAI GCGC 1 cut(s) 372
KflI GGGWCCC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 396
LpnPI CCDG 7 cut(s) 108, 166, 219, 392, 414, 432, 472
Lsp1109I GCAGC 2 cut(s) 170, 282
MaeIII GTNAC 1 cut(s) 437
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 4 cut(s) 60, 103, 160, 413
MfeI CAATTG 1 cut(s) 268
MluCI AATT 2 cut(s) 228, 268
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 7, 119, 158, 346, 426
MseI TTAA 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 295
MunI CAATTG 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 417
MwoI GCNNNNNNNGC 4 cut(s) 96, 105, 128, 412
NdeI CATATG 1 cut(s) 152
NdeII GATC 1 cut(s) 202
NlaIII CATG 3 cut(s) 166, 176, 314
NlaIV GGNNCC 3 cut(s) 107, 263, 264
NmuCI GTSAC 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 3 cut(s) 302, 383, 454
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 2 cut(s) 160, 297
PpuMI RGGWCCY 1 cut(s) 262
PsiI TTATAA 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 262
PspFI CCCAGC 2 cut(s) 122, 406
PspN4I GGNNCC 3 cut(s) 107, 263, 264
PspPI GGNCC 2 cut(s) 106, 262
PspPPI RGGWCCY 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 2 cut(s) 159, 296
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 2 cut(s) 106, 262
SetI ASST 6 cut(s) 101, 145, 200, 297, 325, 408
SinI GGWCC 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 2 cut(s) 228, 268
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 228, 268
TfiI GAWTC 3 cut(s) 302, 383, 454
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 3 cut(s) 385, 433, 466
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 2 cut(s) 158, 295
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 4 cut(s) 103, 123, 189, 299
TspRI CASTG 3 cut(s) 385, 433, 466
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.