Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

43658121 .. 43662867

Gene Structure 4747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGCAGGCGAGCTTCATTGTTAATTTGGGAGACGAAGCTCATGTGCCCATTTTATCATTTTCTGCATCAGCACCTTATCTTACTTCGCTCCGGAGCCCTTACTTTTTCAGAATTACTCAAACCGACTCATACCAAGTGAAAGCCATTAGTAGCATTGTTCAAAATTTTGGATGGAGACAAGTTGTACCAATCTACGTGGACAATATGTATGGGGAGGGAATTATACCTTTTCTCATTGATGGCTTGCAAGATGTTGATGCTCATGTCCCTTACCGTAGTGTCATTTCCCCATCAGCGACTGGTGACCAGATTATAAAAGAGCTTTACAAATTAATGACAATGCAAACTAGAGTCTTCATCGTGCATATGAATTCCAATCTTTGCTCTAAGCTGTTTTCCAAGGCAAAAGAGATAGGAATGATGAGTAAAGGATATGTTTGGATCTTGACCGATGGGATTTCTAATCGTTTAAATTCGATGAATTCTTCAGTCATAGCTTCCATGGAAGGTGTGTTAGGTATCCAAACATTCATCCCGAGAACAACAGAACTTGAAAAATTCGAGCTCCGGTGGAAAGGACAATTCCAACAAGACAACCCAACCATTATAGATGTTCAATTGGATGTTTATGCACTTCAGGCTTATGATGCTGCTTTTGCATTAGCCATGTCAGTTGAAAATGTTGGTATCAGCACAAGCTCTGAAATCCACAAGAATACTTCCTTCAACTCAACTGACCTTGATACTTATAAGGTCTCTGAAAATGGTCCTAAACTTGCTGAAGCATTATCAATTACTAGATTCAAAGGCATAGCTGGAGACTTCAAGCTTGTAGAAGGGCAACTTCAGTCATCATCTTTTACAATTGTTAATATAAAAAGTGAGGGAGAAAAACCAGTTGCATTTTGGACTCCGGAAAATCAAATGGTGAAACAGTTGAATGACTCAACAAACACAAGCATCCTTTCAACTAATTCCAAGAGCAATCTTGGACCAATTAAATGGCCTGGAAATTCTCTCTCTGTTCCAAGGGGATGGGAGATACCAACAAATGGCAAGAAGTTGATAATAGGAGTTCCTGTCAAGATTGATTTTACTGAATTTGTTAAGATCTCGAAAGATCCAAAGACCGGCACAATGGATGTCACTGGGTTCTGTATTGATGTCTTTCATGCTGCATTGAAAGTATTACCTTATGCTCTTCCTTATGAGTTCACTCCCTTCTCAAACCCTGATGGCACCAGCGCTGGCAATTATAATGATTTGGTCTATCAAGTATATCTTGGGAAGTTTGATGCCATCGTCGGAGATACAACAATTAGAGCAAATAGGTCCTTGTATGTGGACTTTACAATGCCATACACAGAATCTGGTGTTGTAATGGTGGTGCCAATCATAGACAGAACGAGCAAGAATGCATGGGTTTTCTTAAAGCCATTGACTTGGGACCTGTGGCTTACAACTTTTTGTTTCTTCCTCTTTACTGGTTTTGTTGTTTGGGTTCTGGAACATCGAATTAATGAAGATTTTCGTGGTCCTCCTTCACATCAATTTGGGACTAGTGTCTGGTTTTCCTTCTCAACGATGGTTTTCTCACAAAAAGAGAATGTGAATAGCAACTTGGCTAGATTCGTGATGATTATATGGGTATCCGTTGTCCTAATATTGACACAAAGTTATACAGCTAATCTAGCATCGCTATTAACTGTCCAACAACTTAAGCCAACCGTTGTCGATATTAAGGATCTATTAAGGACAGGGGATAGTGTCGGGTACGCTAAGAATGCTTATGTTTATGGACTCTTGAAAGAAGTAGGTTTCAAAGATTCAAATCTTAAAAGTTTTAGAACTATGGAAGCACTTGATGAAGCTCTTTCAAAAGGGAGTGCAAATGGTGGTATTGCTGCTTTTGTTGATGAAACCCCAACTATGAAGCTTTTTCTTGCAAAGTATTGTTCTAAATATACCATGATTGGACCCATCGCTAAAACTGAAGGGCTTGGTTTTGTGTTTCCAAAGCGTTCCCCTCTTGTACATGATGTTTCACAAGCAATCCTAGACGTAACTGAAGGAGAGCAGATGATGAGCATTGAATCAAAATGGTTCAAGAAAGAAAGCAATTGTCAAAGCTCCAGCCAACTGGGTTCTAGCAATAGTCTTGGACTCGATAGCTTTTGGGGGTTATTCCTTATTGCTGGAGTGGCTTCAATATTCGCTCTCATCATATTTGTAGCTTCATTTCTTTACGAGAATGGACACCTCTTGATAGATTCTGATTCAGAAGCTTCGACATCAGAAAGGATTGGGGTCTTGTTCAAAATTTTCAATCAGAAAGACCTAAATTCTCATACATTTAAGAGCAGTCAACCGAGAGATCGTATCACTGATGCTAGAGATGAAGTAAACATCTCACCAAATAACAACTGGCCAGAAAGTCCATTTAGCTACAACAATCACCGTGATGGCAATTCAGAGCAACACATACCACCTCCAGGTCAAGCATCTTTAGAATTAGTTCCAAGGCATGGATTCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

845

Amino Acids

94.15

Weight (kDa)

5.82

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	2 - 293	1.6e-67	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	373 - 463	5.8e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	382 - 703	6e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	481 - 735	1.7e-39	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	314, 750, 1257
AccB1I	GGYRCC	2 cut(s)	1238, 1387
AccB7I	CCANNNNNTGG	2 cut(s)	1052, 2525
AccIII	TCCGGA	2 cut(s)	90, 913
AclWI	GGATC	3 cut(s)	449, 1115, 1752
AcoI	YGGCCR	1 cut(s)	2426
AcsI	RAATTY	9 cut(s)	163, 370, 472, 481, 557, 1012, 1100, 2319, 2341
AcuI	CTGAAG	6 cut(s)	471, 620, 801, 830, 2013, 2088
AfaI	GTAC	3 cut(s)	186, 1775, 2034
AfeI	AGCGCT	1 cut(s)	1246
AfiI	CCNNNNNNNGG	4 cut(s)	1052, 1130, 2492, 2525
AflII	CTTAAG	1 cut(s)	1718
AhlI	ACTAGT	1 cut(s)	1559
AjnI	CCWGG	2 cut(s)	1006, 2491
AjuI	GAANNNNNNNTTGG	2 cut(s)	1604, 1636
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	4 cut(s)	24, 169, 760, 813
AlwI	GGATC	3 cut(s)	449, 1115, 1752
AlwNI	CAGNNNCTG	2 cut(s)	299, 1370
Ama87I	CYCGRG	1 cut(s)	535
Aor13HI	TCCGGA	2 cut(s)	90, 913
Aor51HI	AGCGCT	1 cut(s)	1246
AoxI	GGCC	2 cut(s)	1004, 2426
ApeKI	GCWGC	3 cut(s)	650, 1175, 1904
ApoI	RAATTY	9 cut(s)	163, 370, 472, 481, 557, 1012, 1100, 2319, 2341
AseI	ATTAAT	2 cut(s)	332, 1518
Asp700I	GAANNNNTTC	2 cut(s)	1527, 2514
AspLEI	GCGC	1 cut(s)	1247
AspS9I	GGNCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
AsuHPI	GGTGA	4 cut(s)	314, 940, 2403, 2447
AvaI	CYCGRG	1 cut(s)	535
AvaII	GGWCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
BaeGI	GKGCMC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	2428
BanI	GGYRCC	2 cut(s)	1238, 1387
BanII	GRGCYC	2 cut(s)	98, 567
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	3 cut(s)	637, 1162, 1891
BciT130I	CCWGG	2 cut(s)	1008, 2493
BciVI	GTATCC	2 cut(s)	530, 1660
BcoDI	GTCTC	4 cut(s)	24, 169, 760, 813
BcuI	ACTAGT	1 cut(s)	1559
BfaI	CTAG	8 cut(s)	348, 798, 1560, 1626, 1691, 2057, 2148, 2391
BfoI	RGCGCY	1 cut(s)	1248
BfrI	CTTAAG	1 cut(s)	1718
BfuI	GTATCC	2 cut(s)	530, 1660
BglII	AGATCT	1 cut(s)	1110
BisI	GCNGC	3 cut(s)	651, 1176, 1905
BlsI	GCNGC	3 cut(s)	652, 1177, 1906
Bme1390I	CCNGG	2 cut(s)	1008, 2493
Bme18I	GGWCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
BmeT110I	CYCGRG	1 cut(s)	535
BmgT120I	GGNCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
BmiI	GGNNCC	5 cut(s)	95, 1240, 1389, 1448, 1978
BmrFI	CCNGG	2 cut(s)	1008, 2493
BmrI	ACTGGG	2 cut(s)	1158, 2150
BmsI	GCATC	8 cut(s)	74, 247, 637, 969, 1285, 1703, 2377, 2510
BmuI	ACTGGG	2 cut(s)	1158, 2150
BoxI	GACNNNNGTC	1 cut(s)	1562
BpiI	GAAGAC	1 cut(s)	346
BpmI	CTGGAG	4 cut(s)	837, 2116, 2217, 2475
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	1830
BsaI	GGTCTC	1 cut(s)	760
BsaJI	CCNNGG	4 cut(s)	399, 501, 1028, 2519
BsaWI	WCCGGW	3 cut(s)	90, 567, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	1065, 1095
Bsc4I	CCNNNNNNNGG	4 cut(s)	1052, 1130, 2492, 2525
Bse118I	RCCGGY	1 cut(s)	1130
Bse1I	ACTGG	6 cut(s)	304, 896, 1153, 1489, 2145, 2429
Bse8I	GATNNNNATC	1 cut(s)	1830
BseAI	TCCGGA	2 cut(s)	90, 913
BseBI	CCWGG	2 cut(s)	1008, 2493
BseDI	CCNNGG	4 cut(s)	399, 501, 1028, 2519
BseGI	GGATG	6 cut(s)	176, 531, 628, 960, 1040, 1147
BseJI	GATNNNNATC	1 cut(s)	1830
BseLI	CCNNNNNNNGG	4 cut(s)	1052, 1130, 2492, 2525
BseNI	ACTGG	6 cut(s)	304, 896, 1153, 1489, 2145, 2429
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	637, 1162, 1891
BshFI	GGCC	2 cut(s)	1006, 2428
BshNI	GGYRCC	2 cut(s)	1238, 1387
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	535
BsiSI	CCGG	4 cut(s)	91, 568, 914, 1131
BslFI	GGGAC	3 cut(s)	251, 1460, 1570
BslI	CCNNNNNNNGG	4 cut(s)	1052, 1130, 2492, 2525
BsmAI	GTCTC	4 cut(s)	24, 169, 760, 813
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	3 cut(s)	251, 1460, 1570
BsmI	GAATGC	2 cut(s)	1420, 1789
BsnI	GGCC	2 cut(s)	1006, 2428
Bso31I	GGTCTC	1 cut(s)	760
BsoBI	CYCGRG	1 cut(s)	535
Bsp1286I	GDGCHC	3 cut(s)	48, 98, 567
Bsp13I	TCCGGA	2 cut(s)	90, 913
Bsp1407I	TGTACA	1 cut(s)	2032
Bsp143I	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
Bsp19I	CCATGG	1 cut(s)	501
BspANI	GGCC	2 cut(s)	1006, 2428
BspEI	TCCGGA	2 cut(s)	90, 913
BspLI	GGNNCC	5 cut(s)	95, 1240, 1389, 1448, 1978
BspPI	GGATC	3 cut(s)	449, 1115, 1752
BspQI	GCTCTTC	1 cut(s)	1206
BspT107I	GGYRCC	2 cut(s)	1238, 1387
BspTI	CTTAAG	1 cut(s)	1718
BspTNI	GGTCTC	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	1130
BsrGI	TGTACA	1 cut(s)	2032
BsrI	ACTGG	6 cut(s)	304, 896, 1153, 1489, 2145, 2429
BssAI	RCCGGY	1 cut(s)	1130
BssECI	CCNNGG	4 cut(s)	399, 501, 1028, 2519
BssMI	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
BssT1I	CCWWGG	4 cut(s)	399, 501, 1028, 2519
Bst2UI	CCWGG	2 cut(s)	1008, 2493
Bst4CI	ACNGT	5 cut(s)	275, 936, 1708, 1729, 2459
Bst6I	CTCTTC	1 cut(s)	1206
BstAFI	CTTAAG	1 cut(s)	1718
BstAUI	TGTACA	1 cut(s)	2032
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	6, 10, 245, 1249
BstDEI	CTNAG	2 cut(s)	387, 1779
BstDSI	CCRYGG	1 cut(s)	501
BstEII	GGTNACC	1 cut(s)	302
BstF5I	GGATG	6 cut(s)	176, 531, 628, 960, 1040, 1147
BstH2I	RGCGCY	1 cut(s)	1248
BstHHI	GCGC	1 cut(s)	1247
BstKTI	GATC	5 cut(s)	444, 1113, 1123, 1747, 2377
BstMAI	GTCTC	4 cut(s)	24, 169, 760, 813
BstMBI	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
BstMWI	GCNNNNNNNGC	6 cut(s)	638, 647, 656, 1691, 1784, 2201
BstNI	CCWGG	2 cut(s)	1008, 2493
BstPAI	GACNNNNGTC	1 cut(s)	1562
BstPI	GGTNACC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	1006, 2491
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	637, 1162, 1891
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	4 cut(s)	441, 1110, 1120, 1744
BstXI	CCANNNNNNTGG	4 cut(s)	1002, 1035, 1443, 2140
BstYI	RGATCY	4 cut(s)	441, 1110, 1120, 1744
BsuI	GTATCC	2 cut(s)	530, 1660
BsuRI	GGCC	2 cut(s)	1006, 2428
BtgI	CCRYGG	1 cut(s)	501
BtgZI	GCGATG	2 cut(s)	1680, 1966
BtsCI	GGATG	6 cut(s)	176, 531, 628, 960, 1040, 1147
BtsIMutI	CAGTG	2 cut(s)	1146, 2382
Cac8I	GCNNGC	4 cut(s)	6, 10, 245, 1249
CaiI	CAGNNNCTG	2 cut(s)	299, 1370
CfoI	GCGC	1 cut(s)	1247
Cfr10I	RCCGGY	1 cut(s)	1130
Cfr13I	GGNCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
Csp6I	GTAC	3 cut(s)	185, 1774, 2033
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	9 cut(s)	41, 263, 502, 667, 1172, 1419, 1969, 2036, 2525
CviQI	GTAC	3 cut(s)	185, 1774, 2033
DdeI	CTNAG	2 cut(s)	387, 1779
DpnI	GATC	5 cut(s)	443, 1112, 1122, 1746, 2376
DpnII	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	2426
Eam1104I	CTCTTC	1 cut(s)	1206
EarI	CTCTTC	1 cut(s)	1206
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	4 cut(s)	399, 501, 1028, 2519
Eco24I	GRGCYC	2 cut(s)	98, 567
Eco31I	GGTCTC	1 cut(s)	760
Eco47I	GGWCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
Eco47III	AGCGCT	1 cut(s)	1246
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	6 cut(s)	471, 620, 801, 830, 2013, 2088
Eco88I	CYCGRG	1 cut(s)	535
Eco91I	GGTNACC	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	565
EcoO109I	RGGNCCY	2 cut(s)	1332, 1447
EcoO65I	GGTNACC	1 cut(s)	302
EcoRI	GAATTC	2 cut(s)	370, 481
EcoRII	CCWGG	2 cut(s)	1006, 2491
EcoT14I	CCWWGG	4 cut(s)	399, 501, 1028, 2519
EcoT22I	ATGCAT	1 cut(s)	1420
EcoT38I	GRGCYC	2 cut(s)	98, 567
ErhI	CCWWGG	4 cut(s)	399, 501, 1028, 2519
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	9 cut(s)	44, 266, 505, 670, 1175, 1422, 1972, 2039, 2528
FalI	AAGNNNNNCTT	4 cut(s)	828, 860, 1266, 1298
FaqI	GGGAC	3 cut(s)	251, 1460, 1570
FatI	CATG	9 cut(s)	40, 262, 501, 666, 1171, 1418, 1968, 2035, 2524
FauNDI	CATATG	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	651, 1176, 1905
FokI	GGATG	6 cut(s)	183, 518, 635, 947, 1047, 1154
FriOI	GRGCYC	2 cut(s)	98, 567
Fsp4HI	GCNGC	3 cut(s)	651, 1176, 1905
FspBI	CTAG	8 cut(s)	348, 798, 1560, 1626, 1691, 2057, 2148, 2391
GlaI	GCGC	1 cut(s)	1246
GluI	GCNGC	3 cut(s)	651, 1176, 1905
GsuI	CTGGAG	4 cut(s)	837, 2116, 2217, 2475
HaeII	RGCGCY	1 cut(s)	1248
HaeIII	GGCC	2 cut(s)	1006, 2428
HapII	CCGG	4 cut(s)	91, 568, 914, 1131
HhaI	GCGC	1 cut(s)	1247
Hin1II	CATG	9 cut(s)	44, 266, 505, 670, 1175, 1422, 1972, 2039, 2528
Hin6I	GCGC	1 cut(s)	1245
HinP1I	GCGC	1 cut(s)	1245
HincII	GTYRAC	1 cut(s)	2366
HindII	GTYRAC	1 cut(s)	2366
HindIII	AAGCTT	3 cut(s)	827, 1934, 2283
HpaII	CCGG	4 cut(s)	91, 568, 914, 1131
HphI	GGTGA	4 cut(s)	314, 940, 2403, 2447
Hpy166II	GTNNAC	5 cut(s)	199, 1215, 1345, 2366, 2404
Hpy188I	TCNGA	9 cut(s)	110, 703, 760, 1307, 2275, 2281, 2296, 2331, 2473
Hpy8I	GTNNAC	5 cut(s)	199, 1215, 1345, 2366, 2404
Hpy99I	CGWCG	1 cut(s)	1307
HpyAV	CCTTC	8 cut(s)	500, 733, 830, 1231, 1551, 1585, 1988, 2063
HpyCH4III	ACNGT	5 cut(s)	275, 936, 1708, 1729, 2459
HpyCH4IV	ACGT	2 cut(s)	195, 2061
HpyF10VI	GCNNNNNNNGC	6 cut(s)	638, 647, 656, 1691, 1784, 2201
HpyF3I	CTNAG	2 cut(s)	387, 1779
HpySE526I	ACGT	2 cut(s)	195, 2061
Hsp92II	CATG	9 cut(s)	44, 266, 505, 670, 1175, 1422, 1972, 2039, 2528
HspAI	GCGC	1 cut(s)	1245
Kpn2I	TCCGGA	2 cut(s)	90, 913
Kzo9I	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
LguI	GCTCTTC	1 cut(s)	1206
LmnI	GCTCC	4 cut(s)	93, 93, 570, 2135
Lsp1109I	GCAGC	3 cut(s)	637, 1162, 1891
LweI	GCATC	8 cut(s)	74, 247, 637, 969, 1285, 1703, 2377, 2510
MaeI	CTAG	8 cut(s)	348, 798, 1560, 1626, 1691, 2057, 2148, 2391
MaeII	ACGT	2 cut(s)	195, 2061
MaeIII	GTNAC	3 cut(s)	302, 1144, 2062
MalI	GATC	5 cut(s)	443, 1112, 1122, 1746, 2376
MboI	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
MboII	GAAGA	5 cut(s)	346, 477, 1193, 1465, 1535
MfeI	CAATTG	3 cut(s)	617, 864, 2119
MflI	RGATCY	4 cut(s)	441, 1110, 1120, 1744
MhlI	GDGCHC	3 cut(s)	48, 98, 567
MlsI	TGGCCA	1 cut(s)	2428
MluNI	TGGCCA	1 cut(s)	2428
MlyI	GAGTC	6 cut(s)	119, 360, 904, 938, 1794, 2157
MmeI	TCCRAC	3 cut(s)	610, 1285, 1735
MnlI	CCTC	7 cut(s)	208, 877, 1487, 1548, 2037, 2270, 2499
Mox20I	TGGCCA	1 cut(s)	2428
Mph1103I	ATGCAT	1 cut(s)	1420
MroI	TCCGGA	2 cut(s)	90, 913
MroXI	GAANNNNTTC	2 cut(s)	1527, 2514
MscI	TGGCCA	1 cut(s)	2428
MslI	CAYNNNNRTG	1 cut(s)	2460
Msp20I	TGGCCA	1 cut(s)	2428
MspCI	CTTAAG	1 cut(s)	1718
MspI	CCGG	4 cut(s)	91, 568, 914, 1131
MspR9I	CCNGG	2 cut(s)	1008, 2493
MunI	CAATTG	3 cut(s)	617, 864, 2119
Mva1269I	GAATGC	2 cut(s)	1420, 1789
MvaI	CCWGG	2 cut(s)	1008, 2493
MwoI	GCNNNNNNNGC	6 cut(s)	638, 647, 656, 1691, 1784, 2201
NcoI	CCATGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
NlaIII	CATG	9 cut(s)	44, 266, 505, 670, 1175, 1422, 1972, 2039, 2528
NlaIV	GGNNCC	5 cut(s)	95, 1240, 1389, 1448, 1978
NmuCI	GTSAC	2 cut(s)	302, 1144
NsiI	ATGCAT	1 cut(s)	1420
PciSI	GCTCTTC	1 cut(s)	1206
PctI	GAATGC	2 cut(s)	1420, 1789
PdmI	GAANNNNTTC	2 cut(s)	1527, 2514
PfeI	GAWTC	8 cut(s)	801, 1367, 1629, 1826, 2093, 2270, 2276, 2529
PflMI	CCANNNNNTGG	2 cut(s)	1052, 2525
PkrI	GCNGC	3 cut(s)	652, 1177, 1906
PleI	GAGTC	6 cut(s)	119, 359, 904, 938, 1794, 2157
PpsI	GAGTC	6 cut(s)	119, 359, 904, 938, 1794, 2157
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	2 cut(s)	1332, 1447
PshAI	GACNNNNGTC	1 cut(s)	1562
PshBI	ATTAAT	2 cut(s)	332, 1518
PsiI	TTATAA	3 cut(s)	314, 750, 1257
Psp124BI	GAGCTC	1 cut(s)	567
Psp5II	RGGWCCY	2 cut(s)	1332, 1447
Psp6I	CCWGG	2 cut(s)	1006, 2491
PspEI	GGTNACC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	1006, 2491
PspN4I	GGNNCC	5 cut(s)	95, 1240, 1389, 1448, 1978
PspPI	GGNCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
PspPPI	RGGWCCY	2 cut(s)	1332, 1447
PstNI	CAGNNNCTG	2 cut(s)	299, 1370
PsuI	RGATCY	4 cut(s)	441, 1110, 1120, 1744
RsaI	GTAC	3 cut(s)	186, 1775, 2034
RsaNI	GTAC	3 cut(s)	185, 1774, 2033
RseI	CAYNNNNRTG	1 cut(s)	2460
SacI	GAGCTC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	1206
SatI	GCNGC	3 cut(s)	651, 1176, 1905
Sau3AI	GATC	5 cut(s)	441, 1110, 1120, 1744, 2374
Sau96I	GGNCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
SchI	GAGTC	6 cut(s)	119, 360, 904, 938, 1794, 2157
ScrFI	CCNGG	2 cut(s)	1008, 2493
SduI	GDGCHC	3 cut(s)	48, 98, 567
SfaNI	GCATC	8 cut(s)	74, 247, 637, 969, 1285, 1703, 2377, 2510
SinI	GGWCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
SmiMI	CAYNNNNRTG	1 cut(s)	2460
SmlI	CTYRAG	1 cut(s)	1718
SmoI	CTYRAG	1 cut(s)	1718
SpeI	ACTAGT	1 cut(s)	1559
SspI	AATATT	2 cut(s)	1665, 2211
SspMI	CTAG	8 cut(s)	348, 798, 1560, 1626, 1691, 2057, 2148, 2391
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	1006, 2491
StyI	CCWWGG	4 cut(s)	399, 501, 1028, 2519
TaaI	ACNGT	5 cut(s)	275, 936, 1708, 1729, 2459
TaiI	ACGT	2 cut(s)	198, 2064
TaqI	TCGA	7 cut(s)	476, 561, 1115, 1513, 1734, 2166, 2288
TaqII	GACCGA	1 cut(s)	464
TatI	WGTACW	1 cut(s)	2032
TfiI	GAWTC	8 cut(s)	801, 1367, 1629, 1826, 2093, 2270, 2276, 2529
TscAI	CASTG	2 cut(s)	1153, 2389
TseFI	GTSAC	2 cut(s)	302, 1144
TseI	GCWGC	3 cut(s)	650, 1175, 1904
Tsp45I	GTSAC	2 cut(s)	302, 1144
TspGWI	ACGGA	1 cut(s)	1642
TspRI	CASTG	2 cut(s)	1153, 2389
Van91I	CCANNNNNTGG	2 cut(s)	1052, 2525
Vha464I	CTTAAG	1 cut(s)	1718
VpaK11BI	GGWCC	6 cut(s)	767, 992, 1332, 1447, 1535, 1976
VspI	ATTAAT	2 cut(s)	332, 1518
XapI	RAATTY	9 cut(s)	163, 370, 472, 481, 557, 1012, 1100, 2319, 2341
XcmI	CCANNNNNNNNNTGG	2 cut(s)	903, 2421
XmnI	GAANNNNTTC	2 cut(s)	1527, 2514
XspI	CTAG	8 cut(s)	348, 798, 1560, 1626, 1691, 2057, 2148, 2391
Zsp2I	ATGCAT	1 cut(s)	1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.