Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

5810420 .. 5815430

Gene Structure 5011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGTCAGCCCATTTCAACACAAGAGCAGCCCCGTTGTTTATTGGGGTTTTATCTTCATCTTCATCTTCACTGGTCACCCTCCTCCAAGTTTGCATAAACCGCACGACAAACTTTCACTTTCTTGCAGTCTCCGATAGCAATACTGCACTCCGAGTCCTTGAGAAACTTCCTGCCCTGGCACAATCTGAAACCATTATCCCAGTGAATGTGGGGGTTGTTCTCGATGACCTTAAGTATTCATTGACCAAGGATATTTGGTTGCGTTGCATGAAAATGGCTCTCGCAGACTTCTATGCTACTCATGCTCACTACAACACTAGGCTTGTTTTGAACACTAGGCACTGCAGAGAAAGTGTTGTCAGTGCAGCTGCTGCAGCTCTAGATCTGATAAAGAATGAACGAGTGAAAGCCATCATCGGGCCAGTGACATCCATGCAGACGAGCTTTGTCATTAATCTTGGAAAGCAGGCTCATGTACCTATTATATCATTTTCTGCTACAAGCCCTTCTCTTACTTCTCTCCGGATCCCCTATTTCTTTCAATTTGCACAAACTGACTCATCCCAAGTGGAAGCCATTAGTGCAATTGTTCAAGCCTTTGGATGGAGACAAGTCGTGCCTATCTATATAGAAACTGAGTATGGGGAGGGAATCATACCATACTTAACTGACGCCTTGCATGAGGTAAATGCTCGTGTCCCATACCGAAGTGCCATTCCCTCATCAGCCACTGATGGTCAAATCGTTCAAGAACTTTCCAAGTTGATGGCAATGGAAACCAGAGTCTTCATTGTCCACATGACAACTGATCTATCCTCTAGATTATTTGTCAAGGCAAAAGAGATTGGGATGATGAGTAAAGGGTATGTATGGCTCACTACTAATGAGATACTTAATAGATTACAGTCACAAAATTCTACAGTCATTGATTCCATGCAAGGTGTATTGGGTGTACAAACTTTTGTTCCACTAACACCAGAGCTTGACGAATTCAAGATACGGTTGAAACAGCAATTCCATACAGACAATCCAGTCATTGGTGCTGAATTGGATGTTCTTGGACTTTGGGCTTATGATGCTGTTTTTGCAGTGGCCATGGCAATTGAACAAGTAATTGGAACTCCAACTGGCTTTCCCTTCCAAGAGCCAAATGCTGCTTCCATCAACTCGACAGATCTTGAAGGTTTTCCGGTCTCTCCATATGGGCCAAAACTTCTCAGAGCTCTGTCAACTGCTAGATTTGAAGGGATAGCTGGACACTTCACGGTTGTTGGCGGGAAACGCAACTCATCAGATTTTCAGATAGTGGCCGGGGGTTCTCTCTCTGTTCCGAAAGGATGGGAAATTCCAAAAAAAGGAAAGAAATTGAGAATTGGAGTTCCTGTCAAGGTTGATTTTACTGAGTTTGTTAAGGTAGCAAAAGACAAAACTAACACAACGGTTGTCACAGGCTTGAGTGTTGATGTATTTAAGGCTGCAATGAAGCTATTACCATATGCTCTTTCTTATGAGTTCATTCCCTTTGCAAACTCTGATGGCACTAGTGCCGGCACTTACAACGAGTTGTGCTATCAAGTATATCTTGGGAACTTTGATGCTGTGGTGGGAGATACAACTATTAGAGCAGACAGGTCATTATATGTGGACTTTACAATGCCATACTCAGAATCTGGTGTAGCAATGGCTGTGCCAGTCATCGACTTCAAGAGCAAACATGTATTGGCTTTCTTGAAGCCTTGGACATGGGACCTGTGGCTAACAATTTCCAGTTTATCATCATTGTATACAGTTGAACAACTCCAGCCAACAGTTACTGACATAGAGGTTCTAGTAAGGCATCGGGATAATGTAGGCTACATAAAGAATACTTTTGTTTACGATCTCCTGAAACAAGTAGGTTTTGATGATTCTAAGCTGAAGGATTTTGAAACAATTGAAGAAATTGATGAAGCTCTTTCAAAAGGGACTGCGAATGGTGGTATTGCTGCTTTTGTTCATGGAACCCCCAAGATGAAGCTTTTTCTTGCCAAATATTGTTCTAAATATACCATGATTGAACCCATCTTTAAAACTGACGGATATGCCTTTGTGTTTCCGAAACGTTCCCCACTTGTAGCCGATGTTTCACAGGCAGTCCTAGACATGACTGGAGGACAGGAGATATTGAATCTTGAAAAGGCATGGTTCGAGAAAGAATCCAGTTGTCAAGACTCGAGTGATGCAACAGTTTCTAGCGATCGTCGTGGGCTAGGTAGCTTTTGGGTCCTGTTCCTCATTGCCGGTTTGGCTTCAGTACTTGCTATGATTATATTTGTCGCTTCCTTCATTTATAGGCATAGGTTCGTGTTAGTGCAACCAGCTGATTCAGAACCCGCAATATGGAGAAAGATCCGAGCTCTGTTCAAAATTTTCAATGAAAAAGACCTCGACTCTCACACTTTCAAAAGGAGTAATCGACAAAGAGATGCAGTTATGGACTCGCCAAACAACTTCCCAGGAACTTTAGTCCACCACAATTCGGATCACACTGATCAAATAAACTCTTTGTTTATTGGAGAGCAACAAACAAGCTCAATTGTTGAAGCGCCTTCAGACGAACTACTTCCTTCACCTACTGAGGTTGTGATCACAGTTCAAAAAATGCGGAGAACTACTTCTAACACAGCTCAAGAATACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

893

Amino Acids

98.95

Weight (kDa)

6.18

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	85 - 377	3.8e-16	Periplasmic binding protein
ANF_receptor	PF01094	87 - 436	1.1e-77	Receptor family ligand binding region
SBP_bac_3	PF00497	480 - 730	1e-06	Bacterial extracellular solute-binding proteins, family 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1031
AccB7I	CCANNNNNTGG	1 cut(s)	1037
AccI	GTMKAC	1 cut(s)	1784
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	4 cut(s)	100, 1275, 2373, 2644
AclI	AACGTT	1 cut(s)	2101
AclWI	GGATC	4 cut(s)	520, 533, 2383, 2529
AcoI	YGGCCR	2 cut(s)	1092, 1308
AcsI	RAATTY	4 cut(s)	913, 989, 1344, 2406
AcuI	CTGAAG	3 cut(s)	1937, 2274, 2574
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	3 cut(s)	477, 954, 2295
AfiI	CCNNNNNNNGG	6 cut(s)	417, 603, 1037, 1355, 2379, 2518
AflII	CTTAAG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	1714
AhlI	ACTAGT	1 cut(s)	1541
AjnI	CCWGG	2 cut(s)	174, 2494
AjuI	GAANNNNNNNTTGG	4 cut(s)	1098, 1130, 1141, 1173
Alw21I	GWGCWC	2 cut(s)	1225, 2398
Alw26I	GTCTC	3 cut(s)	133, 601, 1198
AlwI	GGATC	4 cut(s)	520, 533, 2383, 2529
AlwNI	CAGNNNCTG	4 cut(s)	371, 731, 1670, 1814
Ama87I	CYCGRG	1 cut(s)	2212
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	4 cut(s)	419, 1092, 1205, 1308
ApeKI	GCWGC	8 cut(s)	26, 365, 368, 371, 374, 1154, 1475, 1985
ApoI	RAATTY	4 cut(s)	913, 989, 1344, 2406
AseI	ATTAAT	1 cut(s)	453
Asp700I	GAANNNNTTC	3 cut(s)	1185, 2601, 2653
AspLEI	GCGC	1 cut(s)	2587
AspS9I	GGNCC	4 cut(s)	419, 1205, 1747, 2263
AsuC2I	CCSGG	1 cut(s)	1312
AsuHPI	GGTGA	2 cut(s)	67, 2601
AvaI	CYCGRG	1 cut(s)	2212
AvaII	GGWCC	2 cut(s)	1747, 2263
BalI	TGGCCA	1 cut(s)	1094
BamHI	GGATCC	1 cut(s)	525
BanII	GRGCYC	2 cut(s)	1225, 2398
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	778
Bbv12I	GWGCWC	2 cut(s)	1225, 2398
BbvI	GCAGC	8 cut(s)	38, 355, 358, 377, 386, 1141, 1462, 1972
BccI	CCATC	8 cut(s)	419, 597, 728, 760, 1169, 1332, 1529, 2069
BciT130I	CCWGG	2 cut(s)	176, 2496
BclI	TGATCA	2 cut(s)	2530, 2625
BcnI	CCSGG	1 cut(s)	1312
BcoDI	GTCTC	3 cut(s)	133, 601, 1198
BcuI	ACTAGT	1 cut(s)	1541
BfmI	CTRYAG	3 cut(s)	343, 372, 918
BfoI	RGCGCY	1 cut(s)	2588
BfrI	CTTAAG	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	2285
BglII	AGATCT	2 cut(s)	382, 1174
BisI	GCNGC	8 cut(s)	27, 366, 369, 372, 375, 1155, 1476, 1986
BlsI	GCNGC	8 cut(s)	28, 367, 370, 373, 376, 1156, 1477, 1987
BmcAI	AGTACT	1 cut(s)	2295
Bme1390I	CCNGG	3 cut(s)	176, 1312, 2496
Bme18I	GGWCC	2 cut(s)	1747, 2263
BmeT110I	CYCGRG	1 cut(s)	2212
BmgT120I	GGNCC	4 cut(s)	419, 1205, 1747, 2263
BmiI	GGNNCC	4 cut(s)	527, 1748, 2002, 2264
BmrFI	CCNGG	3 cut(s)	176, 1312, 2496
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	5 cut(s)	1066, 1585, 1846, 2209, 2455
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	778
BpmI	CTGGAG	2 cut(s)	1784, 2169
BpuEI	CTTGAG	3 cut(s)	179, 1474, 2652
BpuMI	CCSGG	1 cut(s)	1312
BsaHI	GRCGYC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	1198
BsaJI	CCNNGG	6 cut(s)	174, 246, 1095, 1311, 1736, 2494
BsaWI	WCCGGW	2 cut(s)	522, 1189
BsaXI	ACNNNNNCTCC	2 cut(s)	1368, 1398
Bsc4I	CCNNNNNNNGG	6 cut(s)	417, 603, 1037, 1355, 2379, 2518
Bse118I	RCCGGY	2 cut(s)	1547, 2279
Bse1I	ACTGG	9 cut(s)	75, 200, 422, 1031, 1132, 1691, 1767, 2152, 2199
Bse3DI	GCAATG	4 cut(s)	777, 1485, 1686, 2274
BseAI	TCCGGA	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	176, 2496
BseDI	CCNNGG	6 cut(s)	174, 246, 1095, 1311, 1736, 2494
BseGI	GGATG	6 cut(s)	428, 560, 608, 855, 1057, 1343
BseLI	CCNNNNNNNGG	6 cut(s)	417, 603, 1037, 1355, 2379, 2518
BseMI	GCAATG	4 cut(s)	777, 1485, 1686, 2274
BseMII	CTCAG	5 cut(s)	627, 1231, 1392, 1677, 2607
BseNI	ACTGG	9 cut(s)	75, 200, 422, 1031, 1132, 1691, 1767, 2152, 2199
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	8 cut(s)	38, 355, 358, 377, 386, 1141, 1462, 1972
BsgI	GTGCAG	2 cut(s)	129, 384
Bsh1285I	CGRYCG	1 cut(s)	2239
BshFI	GGCC	4 cut(s)	421, 1094, 1207, 1310
BsiEI	CGRYCG	1 cut(s)	2239
BsiHKAI	GWGCWC	2 cut(s)	1225, 2398
BsiHKCI	CYCGRG	1 cut(s)	2212
BsiSI	CCGG	5 cut(s)	523, 1190, 1311, 1548, 2280
BslFI	GGGAC	3 cut(s)	683, 1760, 1978
BslI	CCNNNNNNNGG	6 cut(s)	417, 603, 1037, 1355, 2379, 2518
BsmAI	GTCTC	3 cut(s)	133, 601, 1198
BsmFI	GGGAC	3 cut(s)	683, 1760, 1978
BsnI	GGCC	4 cut(s)	421, 1094, 1207, 1310
Bso31I	GGTCTC	1 cut(s)	1198
BsoBI	CYCGRG	1 cut(s)	2212
Bsp1286I	GDGCHC	2 cut(s)	1225, 2398
Bsp13I	TCCGGA	1 cut(s)	522
Bsp1407I	TGTACA	1 cut(s)	952
Bsp19I	CCATGG	1 cut(s)	1095
BspACI	CCGC	4 cut(s)	100, 1275, 2373, 2644
BspANI	GGCC	4 cut(s)	421, 1094, 1207, 1310
BspCNI	CTCAG	5 cut(s)	628, 1230, 1393, 1676, 2608
BspEI	TCCGGA	1 cut(s)	522
BspLI	GGNNCC	4 cut(s)	527, 1748, 2002, 2264
BspMAI	CTGCAG	2 cut(s)	347, 376
BspPI	GGATC	4 cut(s)	520, 533, 2383, 2529
BspTI	CTTAAG	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	1198
BsrDI	GCAATG	4 cut(s)	777, 1485, 1686, 2274
BsrFI	RCCGGY	2 cut(s)	1547, 2279
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	9 cut(s)	75, 200, 422, 1031, 1132, 1691, 1767, 2152, 2199
BssAI	RCCGGY	2 cut(s)	1547, 2279
BssECI	CCNNGG	6 cut(s)	174, 246, 1095, 1311, 1736, 2494
BssNAI	GTATAC	1 cut(s)	1785
BssNI	GRCGYC	1 cut(s)	672
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	3 cut(s)	246, 1095, 1736
Bst1107I	GTATAC	1 cut(s)	1785
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	2 cut(s)	176, 2496
Bst4CI	ACNGT	9 cut(s)	906, 922, 1002, 1267, 1441, 1789, 1810, 2227, 2632
BstACI	GRCGYC	1 cut(s)	672
BstAFI	CTTAAG	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	952
BstC8I	GCNNGC	2 cut(s)	468, 1549
BstDEI	CTNAG	6 cut(s)	636, 1217, 1401, 1663, 1911, 2616
BstDSI	CCRYGG	1 cut(s)	1095
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	6 cut(s)	428, 560, 608, 855, 1057, 1343
BstH2I	RGCGCY	1 cut(s)	2588
BstHHI	GCGC	1 cut(s)	2587
BstMAI	GTCTC	3 cut(s)	133, 601, 1198
BstMCI	CGRYCG	1 cut(s)	2239
BstMWI	GCNNNNNNNGC	9 cut(s)	99, 302, 371, 374, 581, 1076, 1085, 1281, 2285
BstNI	CCWGG	2 cut(s)	176, 2496
BstNSI	RCATGY	1 cut(s)	1718
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	174, 1310, 2494
BstSFI	CTRYAG	3 cut(s)	343, 372, 918
BstV1I	GCAGC	8 cut(s)	38, 355, 358, 377, 386, 1141, 1462, 1972
BstV2I	GAAGAC	1 cut(s)	778
BstX2I	RGATCY	4 cut(s)	382, 525, 1174, 2388
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	4 cut(s)	382, 525, 1174, 2388
BstZ17I	GTATAC	1 cut(s)	1785
BsuRI	GGCC	4 cut(s)	421, 1094, 1207, 1310
BtgI	CCRYGG	1 cut(s)	1095
BtsCI	GGATG	6 cut(s)	428, 560, 608, 855, 1057, 1343
BtsI	GCAGTG	2 cut(s)	340, 1095
BtsIMutI	CAGTG	8 cut(s)	68, 207, 340, 367, 429, 729, 1095, 2526
Cac8I	GCNNGC	2 cut(s)	468, 1549
CaiI	CAGNNNCTG	4 cut(s)	371, 731, 1670, 1814
CfoI	GCGC	1 cut(s)	2587
Cfr10I	RCCGGY	2 cut(s)	1547, 2279
Cfr13I	GGNCC	4 cut(s)	419, 1205, 1747, 2263
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	3 cut(s)	476, 953, 2294
CviQI	GTAC	3 cut(s)	476, 953, 2294
DdeI	CTNAG	6 cut(s)	636, 1217, 1401, 1663, 1911, 2616
DraI	TTTAAA	1 cut(s)	2068
DrdI	GACNNNNNNGTC	1 cut(s)	1031
DseDI	GACNNNNNNGTC	1 cut(s)	1031
EaeI	YGGCCR	2 cut(s)	1092, 1308
Ecl136II	GAGCTC	2 cut(s)	1223, 2396
Eco130I	CCWWGG	3 cut(s)	246, 1095, 1736
Eco24I	GRGCYC	2 cut(s)	1225, 2398
Eco31I	GGTCTC	1 cut(s)	1198
Eco47I	GGWCC	2 cut(s)	1747, 2263
Eco53kI	GAGCTC	2 cut(s)	1223, 2396
Eco57I	CTGAAG	3 cut(s)	1937, 2274, 2574
Eco88I	CYCGRG	1 cut(s)	2212
Eco91I	GGTNACC	1 cut(s)	73
EcoICRI	GAGCTC	2 cut(s)	1223, 2396
EcoO109I	RGGNCCY	2 cut(s)	1747, 2263
EcoO65I	GGTNACC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	989
EcoRII	CCWGG	2 cut(s)	174, 2494
EcoT14I	CCWWGG	3 cut(s)	246, 1095, 1736
EcoT38I	GRGCYC	2 cut(s)	1225, 2398
ErhI	CCWWGG	3 cut(s)	246, 1095, 1736
FalI	AAGNNNNNCTT	2 cut(s)	1566, 1598
FaqI	GGGAC	3 cut(s)	683, 1760, 1978
FauI	CCCGC	2 cut(s)	1268, 2380
FauNDI	CATATG	2 cut(s)	1201, 1495
FbaI	TGATCA	2 cut(s)	2530, 2625
FblI	GTMKAC	1 cut(s)	1784
Fnu4HI	GCNGC	8 cut(s)	27, 366, 369, 372, 375, 1155, 1476, 1986
FokI	GGATG	6 cut(s)	415, 547, 615, 862, 1064, 1350
FriOI	GRGCYC	2 cut(s)	1225, 2398
Fsp4HI	GCNGC	8 cut(s)	27, 366, 369, 372, 375, 1155, 1476, 1986
GlaI	GCGC	1 cut(s)	2586
GluI	GCNGC	8 cut(s)	27, 366, 369, 372, 375, 1155, 1476, 1986
GsuI	CTGGAG	2 cut(s)	1784, 2169
HaeII	RGCGCY	1 cut(s)	2588
HaeIII	GGCC	4 cut(s)	421, 1094, 1207, 1310
HapII	CCGG	5 cut(s)	523, 1190, 1311, 1548, 2280
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	1 cut(s)	2587
Hin1I	GRCGYC	1 cut(s)	672
Hin6I	GCGC	1 cut(s)	2585
HinP1I	GCGC	1 cut(s)	2585
HincII	GTYRAC	1 cut(s)	1230
HindII	GTYRAC	1 cut(s)	1230
HindIII	AAGCTT	1 cut(s)	2015
HpaII	CCGG	5 cut(s)	523, 1190, 1311, 1548, 2280
HphI	GGTGA	2 cut(s)	67, 2601
Hpy166II	GTNNAC	7 cut(s)	796, 953, 1230, 1645, 1785, 1876, 2509
Hpy8I	GTNNAC	7 cut(s)	796, 953, 1230, 1645, 1785, 1876, 2509
Hpy99I	CGWCG	1 cut(s)	2244
HpyAV	CCTTC	8 cut(s)	516, 1147, 1175, 1238, 1912, 2332, 2598, 2616
HpyCH4III	ACNGT	9 cut(s)	906, 922, 1002, 1267, 1441, 1789, 1810, 2227, 2632
HpyCH4IV	ACGT	1 cut(s)	2101
HpyF10VI	GCNNNNNNNGC	9 cut(s)	99, 302, 371, 374, 581, 1076, 1085, 1281, 2285
HpyF3I	CTNAG	6 cut(s)	636, 1217, 1401, 1663, 1911, 2616
HpySE526I	ACGT	1 cut(s)	2101
Hsp92I	GRCGYC	1 cut(s)	672
HspAI	GCGC	1 cut(s)	2585
Kpn2I	TCCGGA	1 cut(s)	522
KroI	GCCGGC	1 cut(s)	1547
KroNI	GCCGGC	1 cut(s)	1549
Ksp22I	TGATCA	2 cut(s)	2530, 2625
Lsp1109I	GCAGC	8 cut(s)	38, 355, 358, 377, 386, 1141, 1462, 1972
LweI	GCATC	5 cut(s)	1066, 1585, 1846, 2209, 2455
MaeII	ACGT	1 cut(s)	2101
MaeIII	GTNAC	5 cut(s)	73, 424, 906, 1444, 1810
MboII	GAAGA	5 cut(s)	45, 51, 57, 778, 1949
MfeI	CAATTG	5 cut(s)	585, 1101, 1932, 2574, 2677
MflI	RGATCY	4 cut(s)	382, 525, 1174, 2388
MhlI	GDGCHC	2 cut(s)	1225, 2398
MlsI	TGGCCA	1 cut(s)	1094
MluNI	TGGCCA	1 cut(s)	1094
MlyI	GAGTC	6 cut(s)	162, 551, 792, 2204, 2423, 2471
MmeI	TCCRAC	1 cut(s)	1148
Mox20I	TGGCCA	1 cut(s)	1094
MroI	TCCGGA	1 cut(s)	522
MroNI	GCCGGC	1 cut(s)	1547
MroXI	GAANNNNTTC	3 cut(s)	1185, 2601, 2653
MscI	TGGCCA	1 cut(s)	1094
MseI	TTAA	7 cut(s)	231, 453, 665, 894, 1410, 1470, 2067
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	1094
MspA1I	CMGCKG	2 cut(s)	368, 2360
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	5 cut(s)	523, 1190, 1311, 1548, 2280
MspR9I	CCNGG	3 cut(s)	176, 1312, 2496
MunI	CAATTG	5 cut(s)	585, 1101, 1932, 2574, 2677
MvaI	CCWGG	2 cut(s)	176, 2496
MwoI	GCNNNNNNNGC	9 cut(s)	99, 302, 371, 374, 581, 1076, 1085, 1281, 2285
NaeI	GCCGGC	1 cut(s)	1549
NciI	CCSGG	1 cut(s)	1312
NcoI	CCATGG	1 cut(s)	1095
NdeI	CATATG	2 cut(s)	1201, 1495
NgoMIV	GCCGGC	1 cut(s)	1547
NlaIV	GGNNCC	4 cut(s)	527, 1748, 2002, 2264
NmuCI	GTSAC	4 cut(s)	73, 424, 906, 1444
NspI	RCATGY	1 cut(s)	1718
PaeR7I	CTCGAG	1 cut(s)	2212
PciI	ACATGT	1 cut(s)	1714
PdiI	GCCGGC	1 cut(s)	1549
PdmI	GAANNNNTTC	3 cut(s)	1185, 2601, 2653
PfeI	GAWTC	7 cut(s)	651, 929, 1667, 1907, 2167, 2195, 2363
PflMI	CCANNNNNTGG	1 cut(s)	1037
PkrI	GCNGC	8 cut(s)	28, 367, 370, 373, 376, 1156, 1477, 1987
Ple19I	CGATCG	1 cut(s)	2239
PleI	GAGTC	6 cut(s)	161, 551, 791, 2204, 2423, 2471
PpsI	GAGTC	6 cut(s)	161, 551, 791, 2204, 2423, 2471
PpuMI	RGGWCCY	2 cut(s)	1747, 2263
PscI	ACATGT	1 cut(s)	1714
PshBI	ATTAAT	1 cut(s)	453
Psp124BI	GAGCTC	2 cut(s)	1225, 2398
Psp1406I	AACGTT	1 cut(s)	2101
Psp5II	RGGWCCY	2 cut(s)	1747, 2263
Psp6I	CCWGG	2 cut(s)	174, 2494
PspEI	GGTNACC	1 cut(s)	73
PspGI	CCWGG	2 cut(s)	174, 2494
PspN4I	GGNNCC	4 cut(s)	527, 1748, 2002, 2264
PspPI	GGNCC	4 cut(s)	419, 1205, 1747, 2263
PspPPI	RGGWCCY	2 cut(s)	1747, 2263
PspXI	VCTCGAGB	1 cut(s)	2212
PstI	CTGCAG	2 cut(s)	347, 376
PstNI	CAGNNNCTG	4 cut(s)	371, 731, 1670, 1814
PsuI	RGATCY	4 cut(s)	382, 525, 1174, 2388
PvuI	CGATCG	1 cut(s)	2239
PvuII	CAGCTG	2 cut(s)	368, 2360
RsaI	GTAC	3 cut(s)	477, 954, 2295
RsaNI	GTAC	3 cut(s)	476, 953, 2294
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	2 cut(s)	1225, 2398
SaqAI	TTAA	7 cut(s)	231, 453, 665, 894, 1410, 1470, 2067
SatI	GCNGC	8 cut(s)	27, 366, 369, 372, 375, 1155, 1476, 1986
Sau96I	GGNCC	4 cut(s)	419, 1205, 1747, 2263
ScaI	AGTACT	1 cut(s)	2295
SchI	GAGTC	6 cut(s)	162, 551, 792, 2204, 2423, 2471
ScrFI	CCNGG	3 cut(s)	176, 1312, 2496
SduI	GDGCHC	2 cut(s)	1225, 2398
SfaNI	GCATC	5 cut(s)	1066, 1585, 1846, 2209, 2455
SfcI	CTRYAG	3 cut(s)	343, 372, 918
Sfr274I	CTCGAG	1 cut(s)	2212
SinI	GGWCC	2 cut(s)	1747, 2263
SlaI	CTCGAG	1 cut(s)	2212
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	5 cut(s)	158, 230, 1453, 2212, 2667
SmoI	CTYRAG	5 cut(s)	158, 230, 1453, 2212, 2667
SpeI	ACTAGT	1 cut(s)	1541
SsiI	CCGC	4 cut(s)	100, 1275, 2373, 2644
SspI	AATATT	1 cut(s)	2033
SstI	GAGCTC	2 cut(s)	1225, 2398
StyD4I	CCNGG	3 cut(s)	174, 1310, 2494
StyI	CCWWGG	3 cut(s)	246, 1095, 1736
TaaI	ACNGT	9 cut(s)	906, 922, 1002, 1267, 1441, 1789, 1810, 2227, 2632
TaiI	ACGT	1 cut(s)	2104
TaqI	TCGA	7 cut(s)	222, 1169, 1698, 2187, 2213, 2427, 2455
TatI	WGTACW	2 cut(s)	952, 2293
TfiI	GAWTC	7 cut(s)	651, 929, 1667, 1907, 2167, 2195, 2363
Tru1I	TTAA	7 cut(s)	231, 453, 665, 894, 1410, 1470, 2067
Tru9I	TTAA	7 cut(s)	231, 453, 665, 894, 1410, 1470, 2067
TscAI	CASTG	8 cut(s)	75, 207, 347, 367, 429, 736, 1095, 2533
TseFI	GTSAC	4 cut(s)	73, 424, 906, 1444
TseI	GCWGC	8 cut(s)	26, 365, 368, 371, 374, 1154, 1475, 1985
Tsp45I	GTSAC	4 cut(s)	73, 424, 906, 1444
TspGWI	ACGGA	1 cut(s)	2091
TspRI	CASTG	8 cut(s)	75, 207, 347, 367, 429, 736, 1095, 2533
Van91I	CCANNNNNTGG	1 cut(s)	1037
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	1747, 2263
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	4 cut(s)	913, 989, 1344, 2406
XbaI	TCTAGA	2 cut(s)	379, 818
XceI	RCATGY	1 cut(s)	1718
XhoI	CTCGAG	1 cut(s)	2212
XmiI	GTMKAC	1 cut(s)	1784
XmnI	GAANNNNTTC	3 cut(s)	1185, 2601, 2653
ZrmI	AGTACT	1 cut(s)	2295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.