Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000247.1

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

235412 .. 246341

Gene Structure 10930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000247.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3843 bp

atggaaggagaagtagttgaaacctttgctattgtggcctcccccagctctccaaccatcaatctagatccggatggatcaagaacgggggaccttgatttgacgcaaactcttggtagcggcaaggatttggaccaactcaaaggtttgcccattgctatatggttttatgatgaggtggttccagctgctgaagagctttctgcaacaagcaaagggagtcaacaaagctaccactatttgtttctcacctaccataagctttgcaaggaaggtcaagggcagaaagtgaagataacttcatggatacgatattggtatagaggagctttgcgctataagaggcctccgaacaaaagcaacaggaacaaaagagatccgcccatagagcccacctatttggctacctttcttgcttggttgtgcctgtttgttttacccagggaaaacaccggtttgattcgtcctggaggtttgaacgagatttctgtttccagcgatcctggtaattgctcggctgctcttccttttcattgtatatatgcatggctagcagagtacttcggcacccactttcaatctccacttcccaaagacctaaggtaccgtatggttcgcttctccggagaattttcaactaagcattttggagactcacagactctttctttgttcaccgcatgtgataatgtgaggatgagtgcatttgccaggatattttcggagaaaagagtgtttatcaacagcggtgacatctctcatttagacttgatatatctcatcagctttcgatccgggtacctttctctaaggcaagataaccgacgagtcattcagccatacagaccacatccgtttagccgacagtttggttatgtccaagacatttctggcagccttaagaatgacattctcaccggtgtactggctctaatttatttggattgggattcttgcatccgaatggacaccaagtgtgtgatgaccaaagtggggtctactaatgaatccctacacaaggctctaaaaacaaaagaagacaaggacgttaacctcgtggcaccaccccgtcgccaaaatgtgattgcttgtgaagtagaatgtagcaccaatgtccctgcgcctccagatagggctttgcttcctgacaacgaccgtcaggctcatctcgtcaacattctagaagatgatggagactctttaaattctcacgttgctttagtccgtctacttaagctgaaaatacccacaatccaagaaagaatgcgtagtgggagcagtagtggcaataatagtgaagtgaactttaagtgtcggaaaactaacaccagtcttgggcctaattattgtgatcccgatgctgagttatgtttttctgtttccaaatcaaatatgagctcgatggagaatcagaagaggaggatcagtatcaaccttgttcttttgtcatggattttcatggtggccgccattgcagctgaaaacacatcaacaatcccagtgaacgtgggagttgttgtagaccttgatgaagtgagtgggaagatgtatttgagttgcatagaaatggcgttctcagatttctatgcttcccatgctcaatacaagactagggtcgttttgaacatcagtaactcccacgaagatgtcgttggtgcagctgatgcagctttggatttgataacgaatgtagaagtgaaagcaatcctaggaccaatgacatcaatgcaagcaacttttgctgttaaacttggagaaaaaactcatgtgccaatcatatcattttctgcaacaagcccttctcttacttcacttcagagctcctattttttccaatttgcacaaaatgactcaacccaagtgaaagccataagtggtattgttcaaaactttggatggaggcgagttgtccccatttacgtagacaatatgtacggggaaggaatcatgccctttctaattgatgccttgctcgaggttgatgctcatgtcccatatcgaagtgtaatttcacaatcagccaccgatgatcaaattgagatagaactttacaagttaatgacaatgcagactagagtcttcatagtgcatatgatgcctaaacttgcatcccagttatttgccaaggcgaaagagattggaatgatgaacaagggttttgtatggatcacgaccaatgggattggagatcgtttaaaggcaatgggatctgttatgaattcgatgcaaggagtattaagtgttgaaactgctgttttagacacattgaagcttagagaattcaaaacaaggtggaaaagacaattccaacaagattatccagaaatcattgatgttgagctggatgcctttggatatcgggcttatgatgcagcttttgcagtagccatggcagttgaaaaagttgggaatgcaggctttggatttcaaaaggcaaatgcttcatctttcaaatctacagatcttggaactctaaaggtctctcaatatggttcaaacctttctaatgccttatctcttaccagtttcagaggcatagttggtgattttagtcttgttgataggcaacttcaactgtcaacttttatgattgttaatgtgaatggtaatggagtaagagcagttggttattggacaccggaaaatggaaggttaatgaagcagttgaattcaacaaacagttgtaatgtttcaggtttcgagtgtgatgctcttggacccattatatggccgggagagtcatcctccgttcccaaaggatgggagatcccagaaaatggtacgaggttaagatttggagttccagtgaaggatggttttacagagtttgttaaagtaacaacagatttgggaactaataccactgatgtcaccgggttcagtattgatgtgtttaaagctgtagtggaactgttaccatatgcacttccttatgagttgattccctatgcatatcctaatggcaccagcgctggcacatataatgatttaatctatcaagtataccttgggagctacactgctaatctagcatcactattaactgtcccaaagctccgaccagctgttaatgatataaatgatcttctaaggaatggtgataacgtgggctacatgaggggtgcttatgtttatggtctcttaaaagaagtaaagtttgatgattccaagctcaaggcttatggatctatggaagaaatagatgatgctctttcaaaagggagtgcaaatggtggtattgctgcaattgttcatgaaaccccctacatgaagctactcgttgcaaaatattgttccaagtatactatgattggaccaatatttaaaactgatggctttggcttcgcatttccaaaaaattcccctcttgtatctgacattacacaagcaatcctaaatttgatggatgatggattgatgaccaagattgaagataaatggatcaagaaagatagtaactgtaaagactctgatgggaatttttctagcagtgctcttggtcttgacagcttttggggcctttttttaattgctgggatagcgtcaatagttgctctaatcatatttgtaacttccttcttgtacgagcataagcatgtcttgatgccccctgattcaggcacctctaatggtgttggtgcacaagatcatgaagtgaaagcctcatcaccaaataagaactggccagaaagtccacaaagctataccggtagtctatatgagaataatggaggtcaaggtcagccatctgagtctgagtcagcaaactcaactaatcttacacttgagaaatgtcctaagctgattggtgaccaagaaatggatgttagagaaattggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

1280

Amino Acids

141.52

Weight (kDa)

5.87

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	603, 798
AccB1I	GGYRCC	6 cut(s)	566, 603, 798, 1060, 2963, 3620
AccB7I	CCANNNNNTGG	4 cut(s)	2727, 2760, 2777, 3820
AccI	GTMKAC	6 cut(s)	998, 1228, 1521, 1923, 3003, 3302
AccIII	TCCGGA	2 cut(s)	70, 623
AciI	CCGC	5 cut(s)	120, 380, 678, 747, 1467
AcoI	YGGCCR	3 cut(s)	1464, 2729, 3683
AcsI	RAATTY	8 cut(s)	629, 1204, 2218, 2279, 2668, 3358, 3397, 3478
AcuI	CTGAAG	2 cut(s)	213, 1799
AdeI	CACNNNGTG	1 cut(s)	975
AfaI	GTAC	7 cut(s)	560, 605, 800, 924, 1934, 2782, 3584
AfeI	AGCGCT	1 cut(s)	2971
AfiI	CCNNNNNNNGG	9 cut(s)	993, 1018, 1335, 2645, 2727, 2760, 2777, 3617, 3820
AflII	CTTAAG	2 cut(s)	899, 1232
AgeI	ACCGGT	3 cut(s)	452, 917, 3707
AjnI	CCWGG	4 cut(s)	440, 466, 502, 710
AjuI	GAANNNNNNNTTGG	2 cut(s)	1635, 1667
Alw21I	GWGCWC	4 cut(s)	1400, 1823, 3496, 3643
Alw26I	GTCTC	4 cut(s)	645, 1188, 2485, 3143
Alw44I	GTGCAC	1 cut(s)	3639
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	1973
Aor13HI	TCCGGA	2 cut(s)	70, 623
Aor51HI	AGCGCT	1 cut(s)	2971
AoxI	GGCC	7 cut(s)	36, 344, 1337, 1464, 2729, 3517, 3683
ApaLI	GTGCAC	1 cut(s)	3639
ApeKI	GCWGC	8 cut(s)	188, 518, 894, 1475, 1658, 1667, 2372, 3242
ApoI	RAATTY	8 cut(s)	629, 1204, 2218, 2279, 2668, 3358, 3397, 3478
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AsiGI	ACCGGT	3 cut(s)	452, 917, 3707
Asp718I	GGTACC	2 cut(s)	603, 798
AspA2I	CCTAGG	1 cut(s)	1708
AspLEI	GCGC	3 cut(s)	336, 1123, 2972
AspS9I	GGNCC	7 cut(s)	91, 133, 1337, 1712, 2717, 3314, 3517
AsuC2I	CCSGG	3 cut(s)	796, 2733, 2875
AsuHPI	GGTGA	9 cut(s)	241, 667, 761, 907, 2555, 2863, 3110, 3660, 3821
AsuNHI	GCTAGC	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	1973
AvaII	GGWCC	5 cut(s)	91, 133, 1712, 2717, 3314
AvrII	CCTAGG	1 cut(s)	1708
AxyI	CCTNAGG	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	3643
BalI	TGGCCA	1 cut(s)	3685
BanI	GGYRCC	6 cut(s)	566, 603, 798, 1060, 2963, 3620
BanII	GRGCYC	3 cut(s)	393, 1400, 1823
BauI	CACGAG	1 cut(s)	1055
BbsI	GAAGAC	2 cut(s)	1044, 2071
Bbv12I	GWGCWC	4 cut(s)	1400, 1823, 3496, 3643
BbvI	GCAGC	8 cut(s)	175, 505, 906, 1487, 1670, 1679, 2384, 3229
BcgI	CGANNNNNNTGC	4 cut(s)	1964, 1998, 2690, 2724
BciT130I	CCWGG	4 cut(s)	442, 468, 504, 712
BciVI	GTATCC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	2029
BcnI	CCSGG	3 cut(s)	796, 2733, 2875
BcoDI	GTCTC	4 cut(s)	645, 1188, 2485, 3143
BfaI	CTAG	8 cut(s)	65, 551, 1181, 1611, 1709, 2073, 3029, 3486
BfmI	CTRYAG	2 cut(s)	2457, 2901
BfoI	RGCGCY	1 cut(s)	2973
BfrI	CTTAAG	2 cut(s)	899, 1232
BfuI	GTATCC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	2461
BlnI	CCTAGG	1 cut(s)	1708
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	7 cut(s)	442, 468, 504, 712, 796, 2733, 2875
Bme18I	GGWCC	5 cut(s)	91, 133, 1712, 2717, 3314
BmeT110I	CYCGRG	1 cut(s)	1973
BmgT120I	GGNCC	7 cut(s)	91, 133, 1337, 1712, 2717, 3314, 3517
BmrFI	CCNGG	7 cut(s)	442, 468, 504, 712, 796, 2733, 2875
BmrI	ACTGGG	2 cut(s)	1493, 2107
BmtI	GCTAGC	1 cut(s)	554
BmuI	ACTGGG	2 cut(s)	1493, 2107
BoxI	GACNNNNGTC	2 cut(s)	1613, 2075
BpiI	GAAGAC	2 cut(s)	1044, 2071
BplI	GAGNNNNNCTC	2 cut(s)	2729, 2761
BpmI	CTGGAG	2 cut(s)	489, 1110
Bpu10I	CCTNAGC	1 cut(s)	3798
BpuEI	CTTGAG	2 cut(s)	3158, 3806
BpuMI	CCSGG	3 cut(s)	796, 2733, 2875
BsaAI	YACGTR	1 cut(s)	1921
BsaBI	GATNNNNATC	1 cut(s)	1427
BsaI	GGTCTC	2 cut(s)	2485, 3143
BsaJI	CCNNGG	6 cut(s)	440, 441, 1708, 2124, 2388, 3007
BsaWI	WCCGGW	6 cut(s)	70, 452, 623, 917, 2638, 3707
BsaXI	ACNNNNNCTCC	9 cut(s)	30, 1267, 1297, 1411, 1441, 1503, 1533, 2790, 2820
Bsc4I	CCNNNNNNNGG	9 cut(s)	993, 1018, 1335, 2645, 2727, 2760, 2777, 3617, 3820
Bse118I	RCCGGY	3 cut(s)	452, 917, 3707
Bse1I	ACTGG	7 cut(s)	930, 1329, 1499, 2113, 2523, 2804, 3686
Bse21I	CCTNAGG	1 cut(s)	599
Bse3DI	GCAATG	3 cut(s)	153, 1470, 2208
Bse8I	GATNNNNATC	1 cut(s)	1427
BseAI	TCCGGA	2 cut(s)	70, 623
BseBI	CCWGG	4 cut(s)	442, 468, 504, 712
BseDI	CCNNGG	6 cut(s)	440, 441, 1708, 2124, 2388, 3007
BseJI	GATNNNNATC	1 cut(s)	1427
BseLI	CCNNNNNNNGG	9 cut(s)	993, 1018, 1335, 2645, 2727, 2760, 2777, 3617, 3820
BseMI	GCAATG	3 cut(s)	153, 1470, 2208
BseMII	CTCAG	4 cut(s)	1353, 1590, 3741, 3747
BseNI	ACTGG	7 cut(s)	930, 1329, 1499, 2113, 2523, 2804, 3686
BseRI	GAGGAG	2 cut(s)	339, 1432
BseSI	GKGCMC	1 cut(s)	3643
BseXI	GCAGC	8 cut(s)	175, 505, 906, 1487, 1670, 1679, 2384, 3229
BseYI	CCCAGC	2 cut(s)	44, 3533
BsgI	GTGCAG	1 cut(s)	1677
Bsh1285I	CGRYCG	1 cut(s)	1156
BshFI	GGCC	7 cut(s)	38, 346, 1339, 1466, 2731, 3519, 3685
BshNI	GGYRCC	6 cut(s)	566, 603, 798, 1060, 2963, 3620
BshTI	ACCGGT	3 cut(s)	452, 917, 3707
BsiEI	CGRYCG	1 cut(s)	1156
BsiHKAI	GWGCWC	4 cut(s)	1400, 1823, 3496, 3643
BsiHKCI	CYCGRG	1 cut(s)	1973
BsiSI	CCGG	9 cut(s)	71, 453, 624, 795, 918, 2639, 2732, 2874, 3708
BslFI	GGGAC	5 cut(s)	104, 1100, 1895, 1976, 3032
BslI	CCNNNNNNNGG	9 cut(s)	993, 1018, 1335, 2645, 2727, 2760, 2777, 3617, 3820
BsmAI	GTCTC	4 cut(s)	645, 1188, 2485, 3143
BsmFI	GGGAC	5 cut(s)	104, 1100, 1895, 1976, 3032
BsmI	GAATGC	2 cut(s)	1269, 2416
BsnI	GGCC	7 cut(s)	38, 346, 1339, 1466, 2731, 3519, 3685
Bso31I	GGTCTC	2 cut(s)	2485, 3143
BsoBI	CYCGRG	1 cut(s)	1973
Bsp1286I	GDGCHC	5 cut(s)	393, 1400, 1823, 3496, 3643
Bsp13I	TCCGGA	2 cut(s)	70, 623
Bsp19I	CCATGG	1 cut(s)	2388
BspACI	CCGC	5 cut(s)	120, 380, 678, 747, 1467
BspANI	GGCC	7 cut(s)	38, 346, 1339, 1466, 2731, 3519, 3685
BspCNI	CTCAG	4 cut(s)	1354, 1589, 3742, 3748
BspEI	TCCGGA	2 cut(s)	70, 623
BspHI	TCATGA	2 cut(s)	3253, 3649
BspOI	GCTAGC	1 cut(s)	554
BspQI	GCTCTTC	2 cut(s)	189, 528
BspT107I	GGYRCC	6 cut(s)	566, 603, 798, 1060, 2963, 3620
BspTI	CTTAAG	2 cut(s)	899, 1232
BspTNI	GGTCTC	2 cut(s)	2485, 3143
BsrDI	GCAATG	3 cut(s)	153, 1470, 2208
BsrFI	RCCGGY	3 cut(s)	452, 917, 3707
BsrI	ACTGG	7 cut(s)	930, 1329, 1499, 2113, 2523, 2804, 3686
BssAI	RCCGGY	3 cut(s)	452, 917, 3707
BssECI	CCNNGG	6 cut(s)	440, 441, 1708, 2124, 2388, 3007
BssNAI	GTATAC	2 cut(s)	3004, 3303
BssSI	CACGAG	1 cut(s)	1055
BssT1I	CCWWGG	4 cut(s)	1708, 2124, 2388, 3007
Bst1107I	GTATAC	2 cut(s)	3004, 3303
Bst2BI	CACGAG	1 cut(s)	1055
Bst2UI	CCWGG	4 cut(s)	442, 468, 504, 712
Bst4CI	ACNGT	8 cut(s)	608, 867, 1157, 2577, 2681, 2913, 3046, 3461
Bst6I	CTCTTC	3 cut(s)	189, 528, 1409
BstAFI	CTTAAG	2 cut(s)	899, 1232
BstAPI	GCANNNNNTGC	4 cut(s)	1664, 1739, 2095, 2378
BstBAI	YACGTR	1 cut(s)	1921
BstC8I	GCNNGC	4 cut(s)	552, 1731, 2416, 2974
BstDSI	CCRYGG	1 cut(s)	2388
BstEII	GGTNACC	1 cut(s)	3809
BstENI	CCTNNNNNAGG	2 cut(s)	1016, 3615
BstH2I	RGCGCY	1 cut(s)	2973
BstHHI	GCGC	3 cut(s)	336, 1123, 2972
BstMAI	GTCTC	4 cut(s)	645, 1188, 2485, 3143
BstMCI	CGRYCG	1 cut(s)	1156
BstNI	CCWGG	4 cut(s)	442, 468, 504, 712
BstNSI	RCATGY	2 cut(s)	684, 3599
BstPAI	GACNNNNGTC	2 cut(s)	1613, 2075
BstPI	GGTNACC	1 cut(s)	3809
BstSCI	CCNGG	7 cut(s)	440, 466, 502, 710, 794, 2731, 2873
BstSFI	CTRYAG	2 cut(s)	2457, 2901
BstSLI	GKGCMC	1 cut(s)	3643
BstSNI	TACGTA	1 cut(s)	1921
BstV1I	GCAGC	8 cut(s)	175, 505, 906, 1487, 1670, 1679, 2384, 3229
BstV2I	GAAGAC	2 cut(s)	1044, 2071
BstX2I	RGATCY	6 cut(s)	67, 376, 2207, 2461, 2766, 3185
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	6 cut(s)	67, 376, 2207, 2461, 2766, 3185
BstZ17I	GTATAC	2 cut(s)	3004, 3303
Bsu36I	CCTNAGG	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	7 cut(s)	38, 346, 1339, 1466, 2731, 3519, 3685
BtgI	CCRYGG	1 cut(s)	2388
BtsI	GCAGTG	2 cut(s)	3018, 3496
BtsIMutI	CAGTG	5 cut(s)	1506, 2811, 2862, 3018, 3496
Cac8I	GCNNGC	4 cut(s)	552, 1731, 2416, 2974
CaiI	CAGNNNCTG	1 cut(s)	191
CciI	TCATGA	2 cut(s)	3253, 3649
CfoI	GCGC	3 cut(s)	336, 1123, 2972
Cfr10I	RCCGGY	3 cut(s)	452, 917, 3707
Cfr13I	GGNCC	7 cut(s)	91, 133, 1337, 1712, 2717, 3314, 3517
CseI	GACGC	2 cut(s)	112, 3531
Csp6I	GTAC	7 cut(s)	559, 604, 799, 923, 1933, 2781, 3583
CspAI	ACCGGT	3 cut(s)	452, 917, 3707
CviQI	GTAC	7 cut(s)	559, 604, 799, 923, 1933, 2781, 3583
DraI	TTTAAA	4 cut(s)	1203, 2196, 2896, 3325
DraIII	CACNNNGTG	1 cut(s)	975
EaeI	YGGCCR	3 cut(s)	1464, 2729, 3683
Eam1104I	CTCTTC	3 cut(s)	189, 528, 1409
EarI	CTCTTC	3 cut(s)	189, 528, 1409
EciI	GGCGGA	1 cut(s)	369
Ecl136II	GAGCTC	2 cut(s)	1398, 1821
Eco105I	TACGTA	1 cut(s)	1921
Eco130I	CCWWGG	4 cut(s)	1708, 2124, 2388, 3007
Eco147I	AGGCCT	1 cut(s)	346
Eco24I	GRGCYC	3 cut(s)	393, 1400, 1823
Eco31I	GGTCTC	2 cut(s)	2485, 3143
Eco32I	GATATC	1 cut(s)	2357
Eco47I	GGWCC	5 cut(s)	91, 133, 1712, 2717, 3314
Eco47III	AGCGCT	1 cut(s)	2971
Eco53kI	GAGCTC	2 cut(s)	1398, 1821
Eco57I	CTGAAG	2 cut(s)	213, 1799
Eco81I	CCTNAGG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	1973
Eco91I	GGTNACC	1 cut(s)	3809
EcoICRI	GAGCTC	2 cut(s)	1398, 1821
EcoNI	CCTNNNNNAGG	2 cut(s)	1016, 3615
EcoO109I	RGGNCCY	2 cut(s)	91, 3517
EcoO65I	GGTNACC	1 cut(s)	3809
EcoRI	GAATTC	3 cut(s)	2218, 2279, 2668
EcoRII	CCWGG	4 cut(s)	440, 466, 502, 710
EcoRV	GATATC	1 cut(s)	2357
EcoT14I	CCWWGG	4 cut(s)	1708, 2124, 2388, 3007
EcoT22I	ATGCAT	2 cut(s)	547, 2953
EcoT38I	GRGCYC	3 cut(s)	393, 1400, 1823
ErhI	CCWWGG	4 cut(s)	1708, 2124, 2388, 3007
FalI	AAGNNNNNCTT	4 cut(s)	2991, 3023, 3584, 3616
FaqI	GGGAC	5 cut(s)	104, 1100, 1895, 1976, 3032
FauNDI	CATATG	2 cut(s)	2091, 2920
FbaI	TGATCA	1 cut(s)	2029
FblI	GTMKAC	6 cut(s)	998, 1228, 1521, 1923, 3003, 3302
FriOI	GRGCYC	3 cut(s)	393, 1400, 1823
FspBI	CTAG	8 cut(s)	65, 551, 1181, 1611, 1709, 2073, 3029, 3486
GlaI	GCGC	3 cut(s)	335, 1122, 2971
GsaI	CCCAGC	2 cut(s)	48, 3537
GsuI	CTGGAG	2 cut(s)	489, 1110
HaeII	RGCGCY	1 cut(s)	2973
HaeIII	GGCC	7 cut(s)	38, 346, 1339, 1466, 2731, 3519, 3685
HapII	CCGG	9 cut(s)	71, 453, 624, 795, 918, 2639, 2732, 2874, 3708
HgaI	GACGC	2 cut(s)	112, 3531
HhaI	GCGC	3 cut(s)	336, 1123, 2972
Hin6I	GCGC	3 cut(s)	334, 1121, 2970
HinP1I	GCGC	3 cut(s)	334, 1121, 2970
HincII	GTYRAC	4 cut(s)	224, 1051, 1174, 2580
HindII	GTYRAC	4 cut(s)	224, 1051, 1174, 2580
HindIII	AAGCTT	2 cut(s)	260, 2270
HpaI	GTTAAC	1 cut(s)	1051
HpaII	CCGG	9 cut(s)	71, 453, 624, 795, 918, 2639, 2732, 2874, 3708
HphI	GGTGA	9 cut(s)	241, 667, 761, 907, 2555, 2863, 3110, 3660, 3821
Hpy99I	CGWCG	2 cut(s)	828, 1074
HpyAV	CCTTC	6 cut(s)	266, 1809, 1934, 2643, 2803, 3586
HpyCH4III	ACNGT	8 cut(s)	608, 867, 1157, 2577, 2681, 2913, 3046, 3461
HpyCH4IV	ACGT	5 cut(s)	1047, 1212, 1506, 1920, 3105
HpySE526I	ACGT	5 cut(s)	1047, 1212, 1506, 1920, 3105
HspAI	GCGC	3 cut(s)	334, 1121, 2970
Kpn2I	TCCGGA	2 cut(s)	70, 623
KpnI	GGTACC	2 cut(s)	607, 802
Ksp22I	TGATCA	1 cut(s)	2029
KspAI	GTTAAC	1 cut(s)	1051
LguI	GCTCTTC	2 cut(s)	189, 528
LmnI	GCTCC	5 cut(s)	326, 1275, 1826, 3012, 3060
Lsp1109I	GCAGC	8 cut(s)	175, 505, 906, 1487, 1670, 1679, 2384, 3229
MaeI	CTAG	8 cut(s)	65, 551, 1181, 1611, 1709, 2073, 3029, 3486
MaeII	ACGT	5 cut(s)	1047, 1212, 1506, 1920, 3105
MaeIII	GTNAC	8 cut(s)	749, 1631, 2836, 2869, 2913, 3455, 3568, 3809
MfeI	CAATTG	1 cut(s)	3246
MflI	RGATCY	6 cut(s)	67, 376, 2207, 2461, 2766, 3185
MhlI	GDGCHC	5 cut(s)	393, 1400, 1823, 3496, 3643
MlsI	TGGCCA	1 cut(s)	3685
MluNI	TGGCCA	1 cut(s)	3685
MmeI	TCCRAC	4 cut(s)	77, 1295, 2332, 3082
Mox20I	TGGCCA	1 cut(s)	3685
Mph1103I	ATGCAT	2 cut(s)	547, 2953
MroI	TCCGGA	2 cut(s)	70, 623
MscI	TGGCCA	1 cut(s)	3685
MslI	CAYNNNNRTG	4 cut(s)	962, 1565, 1644, 3594
Msp20I	TGGCCA	1 cut(s)	3685
MspA1I	CMGCKG	5 cut(s)	188, 747, 1478, 1661, 3065
MspCI	CTTAAG	2 cut(s)	899, 1232
MspI	CCGG	9 cut(s)	71, 453, 624, 795, 918, 2639, 2732, 2874, 3708
MspR9I	CCNGG	7 cut(s)	442, 468, 504, 712, 796, 2733, 2875
MunI	CAATTG	1 cut(s)	3246
Mva1269I	GAATGC	2 cut(s)	1269, 2416
MvaI	CCWGG	4 cut(s)	442, 468, 504, 712
NciI	CCSGG	3 cut(s)	796, 2733, 2875
NcoI	CCATGG	1 cut(s)	2388
NdeI	CATATG	2 cut(s)	2091, 2920
NheI	GCTAGC	1 cut(s)	550
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	3 cut(s)	749, 2869, 3809
NsiI	ATGCAT	2 cut(s)	547, 2953
NspI	RCATGY	2 cut(s)	684, 3599
PaeR7I	CTCGAG	1 cut(s)	1973
PagI	TCATGA	2 cut(s)	3253, 3649
PasI	CCCWGGG	1 cut(s)	441
PceI	AGGCCT	1 cut(s)	346
PciSI	GCTCTTC	2 cut(s)	189, 528
PcsI	WCGNNNNNNNCGW	2 cut(s)	1053, 1647
PctI	GAATGC	2 cut(s)	1269, 2416
PfeI	GAWTC	8 cut(s)	460, 950, 1007, 1408, 1944, 2941, 3164, 3614
PflMI	CCANNNNNTGG	4 cut(s)	2727, 2760, 2777, 3820
PfoI	TCCNGGA	1 cut(s)	466
PinAI	ACCGGT	3 cut(s)	452, 917, 3707
Ppu21I	YACGTR	1 cut(s)	1921
PpuMI	RGGWCCY	1 cut(s)	91
PshAI	GACNNNNGTC	2 cut(s)	1613, 2075
Psp124BI	GAGCTC	2 cut(s)	1400, 1823
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	4 cut(s)	440, 466, 502, 710
PspEI	GGTNACC	1 cut(s)	3809
PspFI	CCCAGC	2 cut(s)	44, 3533
PspGI	CCWGG	4 cut(s)	440, 466, 502, 710
PspPI	GGNCC	7 cut(s)	91, 133, 1337, 1712, 2717, 3314, 3517
PspPPI	RGGWCCY	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	1973
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	6 cut(s)	67, 376, 2207, 2461, 2766, 3185
PvuII	CAGCTG	4 cut(s)	188, 1478, 1661, 3065
RsaI	GTAC	7 cut(s)	560, 605, 800, 924, 1934, 2782, 3584
RsaNI	GTAC	7 cut(s)	559, 604, 799, 923, 1933, 2781, 3583
RseI	CAYNNNNRTG	4 cut(s)	962, 1565, 1644, 3594
SacI	GAGCTC	2 cut(s)	1400, 1823
SapI	GCTCTTC	2 cut(s)	189, 528
Sau96I	GGNCC	7 cut(s)	91, 133, 1337, 1712, 2717, 3314, 3517
ScaI	AGTACT	1 cut(s)	560
ScrFI	CCNGG	7 cut(s)	442, 468, 504, 712, 796, 2733, 2875
SduI	GDGCHC	5 cut(s)	393, 1400, 1823, 3496, 3643
SfcI	CTRYAG	2 cut(s)	2457, 2901
Sfr274I	CTCGAG	1 cut(s)	1973
SgrAI	CRCCGGYG	1 cut(s)	917
SinI	GGWCC	5 cut(s)	91, 133, 1712, 2717, 3314
SlaI	CTCGAG	1 cut(s)	1973
SmiMI	CAYNNNNRTG	4 cut(s)	962, 1565, 1644, 3594
SmlI	CTYRAG	5 cut(s)	899, 1232, 1973, 3173, 3785
SmoI	CTYRAG	5 cut(s)	899, 1232, 1973, 3173, 3785
SnaBI	TACGTA	1 cut(s)	1921
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	5 cut(s)	120, 380, 678, 747, 1467
SspI	AATATT	2 cut(s)	3290, 3321
SspMI	CTAG	8 cut(s)	65, 551, 1181, 1611, 1709, 2073, 3029, 3486
SstI	GAGCTC	2 cut(s)	1400, 1823
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	7 cut(s)	440, 466, 502, 710, 794, 2731, 2873
StyI	CCWWGG	4 cut(s)	1708, 2124, 2388, 3007
TaaI	ACNGT	8 cut(s)	608, 867, 1157, 2577, 2681, 2913, 3046, 3461
TaiI	ACGT	5 cut(s)	1050, 1215, 1509, 1923, 3108
TaqI	TCGA	6 cut(s)	790, 1400, 1974, 1999, 2222, 2700
TatI	WGTACW	2 cut(s)	558, 922
TauI	GCSGC	2 cut(s)	123, 1469
TfiI	GAWTC	8 cut(s)	460, 950, 1007, 1408, 1944, 2941, 3164, 3614
TscAI	CASTG	5 cut(s)	1506, 2811, 2869, 3025, 3496
TseFI	GTSAC	3 cut(s)	749, 2869, 3809
TseI	GCWGC	8 cut(s)	188, 518, 894, 1475, 1658, 1667, 2372, 3242
Tsp45I	GTSAC	3 cut(s)	749, 2869, 3809
TspGWI	ACGGA	3 cut(s)	843, 1214, 2737
TspRI	CASTG	5 cut(s)	1506, 2811, 2869, 3025, 3496
Van91I	CCANNNNNTGG	4 cut(s)	2727, 2760, 2777, 3820
Vha464I	CTTAAG	2 cut(s)	899, 1232
VneI	GTGCAC	1 cut(s)	3639
VpaK11BI	GGWCC	5 cut(s)	91, 133, 1712, 2717, 3314
XagI	CCTNNNNNAGG	2 cut(s)	1016, 3615
XapI	RAATTY	8 cut(s)	629, 1204, 2218, 2279, 2668, 3358, 3397, 3478
XbaI	TCTAGA	2 cut(s)	64, 1180
XceI	RCATGY	2 cut(s)	684, 3599
XcmI	CCANNNNNNNNNTGG	2 cut(s)	887, 3678
XhoI	CTCGAG	1 cut(s)	1973
XmaJI	CCTAGG	1 cut(s)	1708
XmiI	GTMKAC	6 cut(s)	998, 1228, 1521, 1923, 3003, 3302
XspI	CTAG	8 cut(s)	65, 551, 1181, 1611, 1709, 2073, 3029, 3486
ZrmI	AGTACT	1 cut(s)	560
Zsp2I	ATGCAT	2 cut(s)	547, 2953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.