Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

30929063 .. 30932566

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGGCACAAAACCAAACCATCCCGGTGAATATAGGAGTTATTCTTCATGACCTTAATTCACTGGTGGGGAAGATTTTGTTGAGCTGCATTAATATGGCCCTTTCAGACTTCTATGCTTCTCATACTTACTATAACACTAGATTGGTTTTGAACACTAGAGAGTCCAAACGAAATGTCGTCAGTGCAGCTTCTGCAGATACAGCTCTAGATCTGATAGAGAATGCACATGTGCAAGCAATCTTAGGACCAGTGACATCTATGGAAGAGAGCTTCGTTATAAGTCTTGGGGAGCAAGCTGAGGTGCCCATTATATCATTCTCTGCAACAAGCCCTTCTCTTACTTCACTGCGAAGCTCCTACTTTTTTCAGTTTGCACAAAATGACTCGGCCCAAGTAAAAGCATTGAGTGCAGTTGTAAAAGGTTTTGGATGGAGGCAAGTGGTGCTCATATACGTAGACAATGAGTTTGGGGAAGGAGTCGTACCATATTTAACTGATGCCTTGGAGGAGGTTGATGCCCGTGTACCATACCGGAGCATCGTTTCCCCATCAGCCACAGATAGCCAAATAGTTGAAGAGCTGTACAAGCTAATGACAATGCAAACAAGGGTCTTCATCGTCCACATGACAACTGATTTGTCATTCAGGCTATTTGCCAAGGCAAAAGAGATTGGAATGATGAGTGAAGGCTATGTTTGGCTCACAACTAACAGCATACCTAATAGTTTGAAGTTTCTGAATTCTTCAGCCATAAATTCCATGCAAGGAGTATTAGGTGTGCAAACTTACATTCCAGCAACTGTAGAGTTTGAAGAATTCAAGCTTCGGTGGAAACAACAATTCCGCAAAGACAATCCAACCATCATTGGTGCTGAGTTGAATACTTTTGCATTTTGGGCTTACGATGCTGCGTTTTCATTGGCCATGGCAATTGAAGAAGTTGAGACTACAAGCTTTGGCTTCCAAAGGAGCAATGCTTCCATCAACTCATCAACAGATCTTGAAAGTTTTGAGGTCTCTCAATATGGTCCAAAACTTTGCCAAGCACTGTCACTTACTAGATTTGAAGGCGTGGCTGGAAATTTCAACCTTGTTGATGGGCAGCGTCAAACATCAACTTTTCAAATAGTCAATATAAATGGTCGTGGAGCTAGAACAGTTGGATTTTGGACCTTGAAAAATGGAATCATGAGAAAATTGGGTTCACCATCATCAGTAAACTCGAGCATAAGTTCAACTTCTAAAGGCGATCTTGGACCAATTATATGGCCCGGAGATTCAATCTCTGTTCCCAAAGGATGGGTAAACCCAGCAAACGGCAAGAAGTTGAGAATAGGAGTTCCCGTAAAGGAAGGTTTCACTGAGTTCGTTTCTGTGACAAAAGATCCAAGCACTAACACAACATATGTCACAGGGTTCAGTATTGACGTCTTTAAGGCTGCAGTGGACATATTACCTTATGCTCTTTCTTACGAGTTGATTCCCTTTGCAAATCCTGATGGCACAATGGCTGGCACTTACAATGATTTGTGCTATCAAGTATATCTTGGGAAGTTTGATGCTGTGGTGGGAGATGAAACAATTAGAGGAAGTAGATCATTGTATGTAGATTTTACCATGCCATACACAGAATCTGGTGTTGTGATGGTTGTGCCACTCAAAGACATCAGGAGAAAAAGTGCGTGGGTTTTCTTAAAGCCTTTGACATGGGATCTTTGGCTGACAACCTCTTGTTTCTTTGGCCTTATTGGTTTCGTGGTTTGGGTTCTTGAACATCGAATCAATGCAGATTTTCGTGGCCCTCCCTCATATCAAGTTGGCACGAGCATCTGGTTTTCTTTCTCGACCATGGTTTTTTCACACAGGGAGAGAGTAGTTAGCAACTTGGCTAGATTTGTGATGATTATATGGGTATTTGTTATGCTAATATTGACACAAAGTTACACGGCTAATCTTGCGTCACTATTAACAGTCCAAAAACTTTACCCTGTTGTTACTGATCTAAAGCATTACTTAAGGAATGGGGATACTGTTGGCTACCAAAACAATACATATATTTATGATATCTTAAGAGAAATAGGCTTTGATGAGTCCAAGCTTAAGGCATATAAATCTGTTGAAGAATGTGATGCTCTTCTTTCGAAAGGCAGTGAAAATGGTGGTATTGCAGCTGCTATTGATGAAACTCCCAACATGAAGCTTTTTCTTGCAAAATATTGTTCCAAATATACTATGGTTGGACCAATTTTTAAAACTGATGGCTTTGCATTTGTCTTTCCAAAAGGTTCTCCTCTTCTTCATGATGTTTCGCAAGCAATCCTAAACGTGACCGAAGGGGATGTTATACTGAACATTGAAAACAAATGGTTCAATAAAGAAGGCAGTTGTCAAGATAACTCCAACCCAGGGGTTTCTAGCAACAGGCTTGGCCTTGAAACCTTTTGGGGCCTATTCCTCATTGCCGGGGTGGCTTCAGTACTCGCCCTCATCATATTTCTAGCTTCCTTCCTTTACGAGCATAGGCACGTTTTGATTCACACTGATCCAGGAGCCTCTACACGAGGAAAATTTCGAACTATGTTAGAAATTTTTAATGAAAAAGATTTTAGTTCTCATACATTTAAAACCACTCAACGAGATAGAGTCGCTAATGTGGGAGATGCAGTTAATACCATACTAAACAACTGCTTGGAAATTCCAATGGGAGACAGTTCAGACAGCGCAGATCCAAGTTCTCAGTTCATTGGAGAGCAACAAAATAGTACTACGACACCATCTACTGGTCAAGAGCCTGCAGAGGTGAATCCAGCTACTGAGGTTGATATAACAAATGATGGGGAAATGGAAGGCACTCCTGAACGAGCTCAACATTTCTCCGATTGTATTCTTTGCCCGGTTCTACACCCTCACATGTACGTCGTCAGTTCAATGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

978

Amino Acids

108.25

Weight (kDa)

5.27

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	20 - 316	3.9e-18	Periplasmic binding protein
ANF_receptor	PF01094	28 - 381	9.4e-78	Receptor family ligand binding region
SBP_bac_3	PF00497	469 - 791	2.7e-07	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	569 - 824	7.4e-38	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AatII	GACGTC	1 cut(s)	1431
AccB1I	GGYRCC	1 cut(s)	301
AccB7I	CCANNNNNTGG	2 cut(s)	1299, 2780
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	1 cut(s)	844
AclWI	GGATC	4 cut(s)	1379, 1719, 2537, 2720
AcoI	YGGCCR	1 cut(s)	921
AcsI	RAATTY	7 cut(s)	739, 754, 815, 1081, 2567, 2586, 2694
AcuI	CTGAAG	2 cut(s)	729, 2457
AcyI	GRCGYC	1 cut(s)	1428
AfaI	GTAC	6 cut(s)	483, 525, 584, 2478, 2764, 2915
AfiI	CCNNNNNNNGG	4 cut(s)	1299, 1316, 2406, 2780
AflII	CTTAAG	3 cut(s)	2014, 2068, 2099
AflIII	ACRYGT	2 cut(s)	226, 2910
AjnI	CCWGG	2 cut(s)	2404, 2545
Alw21I	GWGCWC	2 cut(s)	447, 2866
Alw26I	GTCTC	3 cut(s)	938, 1021, 2700
AlwI	GGATC	4 cut(s)	1379, 1719, 2537, 2720
AlwNI	CAGNNNCTG	4 cut(s)	191, 800, 1634, 2813
Ama87I	CYCGRG	1 cut(s)	1222
AoxI	GGCC	8 cut(s)	96, 387, 921, 1268, 1741, 1798, 2428, 2446
ApeKI	GCWGC	7 cut(s)	84, 185, 908, 1102, 1439, 2168, 2171
ApoI	RAATTY	7 cut(s)	739, 754, 815, 1081, 2567, 2586, 2694
ArsI	GACNNNNNNTTYG	6 cut(s)	159, 191, 449, 481, 619, 651
AseI	ATTAAT	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	2723
AsuC2I	CCSGG	4 cut(s)	23, 1272, 2464, 2894
AsuHPI	GGTGA	3 cut(s)	37, 1197, 2812
AsuII	TTCGAA	2 cut(s)	2141, 2572
AvaI	CYCGRG	1 cut(s)	1222
AvaII	GGWCC	5 cut(s)	245, 1028, 1170, 1256, 2240
BaeGI	GKGCMC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	923
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	2866
BarI	GAAGNNNNNNTAC	2 cut(s)	465, 497
BauI	CACGAG	2 cut(s)	1822, 2559
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	2 cut(s)	447, 2866
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	7 cut(s)	71, 197, 895, 1114, 1426, 2158, 2180
BceAI	ACGGC	2 cut(s)	1333, 1962
BciT130I	CCWGG	2 cut(s)	2406, 2547
BciVI	GTATCC	1 cut(s)	2020
BcnI	CCSGG	4 cut(s)	23, 1272, 2464, 2894
BcoDI	GTCTC	3 cut(s)	938, 1021, 2700
BfaI	CTAG	9 cut(s)	138, 156, 206, 1059, 1152, 1890, 2415, 2498, 2935
BfmI	CTRYAG	4 cut(s)	192, 801, 1440, 2793
BfrI	CTTAAG	3 cut(s)	2014, 2068, 2099
BfuI	GTATCC	1 cut(s)	2020
BglI	GCCNNNNNGGC	1 cut(s)	2468
BglII	AGATCT	2 cut(s)	208, 997
BisI	GCNGC	7 cut(s)	85, 186, 909, 1103, 1440, 2169, 2172
BlsI	GCNGC	7 cut(s)	86, 187, 910, 1104, 1441, 2170, 2173
BmcAI	AGTACT	2 cut(s)	2478, 2764
Bme1390I	CCNGG	6 cut(s)	23, 1272, 2406, 2464, 2547, 2894
Bme18I	GGWCC	5 cut(s)	245, 1028, 1170, 1256, 2240
BmeT110I	CYCGRG	1 cut(s)	1222
BmiI	GGNNCC	3 cut(s)	303, 2447, 2551
BmrFI	CCNGG	6 cut(s)	23, 1272, 2406, 2464, 2547, 2894
BmsI	GCATC	8 cut(s)	487, 505, 546, 895, 1549, 1836, 2119, 2650
BpiI	GAAGAC	1 cut(s)	604
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu14I	TTCGAA	2 cut(s)	2141, 2572
BpuMI	CCSGG	4 cut(s)	23, 1272, 2464, 2894
BsaAI	YACGTR	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	1428
BsaI	GGTCTC	1 cut(s)	1021
BsaJI	CCNNGG	7 cut(s)	501, 657, 924, 1848, 2404, 2405, 2463
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	6 cut(s)	1329, 1359, 1663, 1693, 2649, 2679
Bsc4I	CCNNNNNNNGG	4 cut(s)	1299, 1316, 2406, 2780
Bse1I	ACTGG	3 cut(s)	66, 248, 2785
Bse3DI	GCAATG	2 cut(s)	979, 2457
BseBI	CCWGG	2 cut(s)	2406, 2547
BseDI	CCNNGG	7 cut(s)	501, 657, 924, 1848, 2404, 2405, 2463
BseGI	GGATG	4 cut(s)	18, 434, 1304, 2344
BseLI	CCNNNNNNNGG	4 cut(s)	1299, 1316, 2406, 2780
BseMI	GCAATG	2 cut(s)	979, 2457
BseMII	CTCAG	5 cut(s)	288, 864, 1353, 2750, 2805
BseNI	ACTGG	3 cut(s)	66, 248, 2785
BseRI	GAGGAG	2 cut(s)	521, 2280
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	7 cut(s)	71, 197, 895, 1114, 1426, 2158, 2180
BseYI	CCCAGC	1 cut(s)	1309
BsgI	GTGCAG	2 cut(s)	204, 429
BshFI	GGCC	8 cut(s)	98, 389, 923, 1270, 1743, 1800, 2430, 2448
BshNI	GGYRCC	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	447, 2866
BsiHKCI	CYCGRG	1 cut(s)	1222
BsiSI	CCGG	5 cut(s)	23, 532, 1272, 2463, 2894
BslI	CCNNNNNNNGG	4 cut(s)	1299, 1316, 2406, 2780
BsmAI	GTCTC	3 cut(s)	938, 1021, 2700
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	8 cut(s)	98, 389, 923, 1270, 1743, 1800, 2430, 2448
Bso31I	GGTCTC	1 cut(s)	1021
BsoBI	CYCGRG	1 cut(s)	1222
Bsp119I	TTCGAA	2 cut(s)	2141, 2572
Bsp1286I	GDGCHC	3 cut(s)	306, 447, 2866
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
Bsp19I	CCATGG	2 cut(s)	924, 1848
BspACI	CCGC	1 cut(s)	844
BspANI	GGCC	8 cut(s)	98, 389, 923, 1270, 1743, 1800, 2430, 2448
BspCNI	CTCAG	5 cut(s)	289, 865, 1354, 2749, 2806
BspHI	TCATGA	3 cut(s)	46, 1188, 2299
BspLI	GGNNCC	3 cut(s)	303, 2447, 2551
BspMAI	CTGCAG	3 cut(s)	196, 1444, 2797
BspPI	GGATC	4 cut(s)	1379, 1719, 2537, 2720
BspQI	GCTCTTC	2 cut(s)	570, 2139
BspT104I	TTCGAA	2 cut(s)	2141, 2572
BspT107I	GGYRCC	1 cut(s)	301
BspTI	CTTAAG	3 cut(s)	2014, 2068, 2099
BspTNI	GGTCTC	1 cut(s)	1021
BsrDI	GCAATG	2 cut(s)	979, 2457
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	3 cut(s)	66, 248, 2785
BssECI	CCNNGG	7 cut(s)	501, 657, 924, 1848, 2404, 2405, 2463
BssMI	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
BssNI	GRCGYC	1 cut(s)	1428
BssSI	CACGAG	2 cut(s)	1822, 2559
BssT1I	CCWWGG	4 cut(s)	501, 657, 924, 1848
Bst2BI	CACGAG	2 cut(s)	1822, 2559
Bst2UI	CCWGG	2 cut(s)	2406, 2547
Bst4CI	ACNGT	6 cut(s)	802, 1050, 1159, 1972, 2032, 2711
Bst6I	CTCTTC	4 cut(s)	258, 570, 2139, 2298
BstACI	GRCGYC	1 cut(s)	1428
BstAFI	CTTAAG	3 cut(s)	2014, 2068, 2099
BstAPI	GCANNNNNTGC	3 cut(s)	191, 407, 442
BstAUI	TGTACA	1 cut(s)	582
BstBAI	YACGTR	1 cut(s)	454
BstBI	TTCGAA	2 cut(s)	2141, 2572
BstC8I	GCNNGC	5 cut(s)	234, 294, 1513, 2313, 2793
BstDEI	CTNAG	6 cut(s)	241, 297, 873, 1362, 2736, 2814
BstDSI	CCRYGG	2 cut(s)	924, 1848
BstF5I	GGATG	4 cut(s)	18, 434, 1304, 2344
BstHHI	GCGC	1 cut(s)	2723
BstKTI	GATC	9 cut(s)	211, 1000, 1252, 1387, 1598, 1714, 2002, 2545, 2728
BstMAI	GTCTC	3 cut(s)	938, 1021, 2700
BstMBI	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
BstMWI	GCNNNNNNNGC	9 cut(s)	191, 200, 407, 442, 586, 896, 905, 1955, 2468
BstNI	CCWGG	2 cut(s)	2406, 2547
BstNSI	RCATGY	2 cut(s)	230, 2914
BstSCI	CCNGG	6 cut(s)	21, 1270, 2404, 2462, 2545, 2892
BstSFI	CTRYAG	4 cut(s)	192, 801, 1440, 2793
BstSLI	GKGCMC	1 cut(s)	306
BstSNI	TACGTA	1 cut(s)	454
BstV1I	GCAGC	7 cut(s)	71, 197, 895, 1114, 1426, 2158, 2180
BstV2I	GAAGAC	1 cut(s)	604
BstX2I	RGATCY	5 cut(s)	208, 997, 1384, 1711, 2725
BstXI	CCANNNNNNTGG	1 cut(s)	1266
BstYI	RGATCY	5 cut(s)	208, 997, 1384, 1711, 2725
BsuI	GTATCC	1 cut(s)	2020
BsuRI	GGCC	8 cut(s)	98, 389, 923, 1270, 1743, 1800, 2430, 2448
BtgI	CCRYGG	2 cut(s)	924, 1848
BtsCI	GGATG	4 cut(s)	18, 434, 1304, 2344
BtsI	GCAGTG	3 cut(s)	344, 1449, 2155
BtsIMutI	CAGTG	9 cut(s)	59, 187, 255, 344, 1046, 1359, 1449, 2155, 2538
Cac8I	GCNNGC	5 cut(s)	234, 294, 1513, 2313, 2793
CaiI	CAGNNNCTG	4 cut(s)	191, 800, 1634, 2813
CciI	TCATGA	3 cut(s)	46, 1188, 2299
CfoI	GCGC	1 cut(s)	2723
CseI	GACGC	2 cut(s)	1094, 1947
Csp6I	GTAC	6 cut(s)	482, 524, 583, 2477, 2763, 2914
CviQI	GTAC	6 cut(s)	482, 524, 583, 2477, 2763, 2914
DdeI	CTNAG	6 cut(s)	241, 297, 873, 1362, 2736, 2814
DpnI	GATC	9 cut(s)	210, 999, 1251, 1386, 1597, 1713, 2001, 2544, 2727
DpnII	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
DraI	TTTAAA	2 cut(s)	2251, 2623
EaeI	YGGCCR	1 cut(s)	921
Eam1104I	CTCTTC	4 cut(s)	258, 570, 2139, 2298
EarI	CTCTTC	4 cut(s)	258, 570, 2139, 2298
Ecl136II	GAGCTC	1 cut(s)	2864
Eco105I	TACGTA	1 cut(s)	454
Eco130I	CCWWGG	4 cut(s)	501, 657, 924, 1848
Eco24I	GRGCYC	1 cut(s)	2866
Eco31I	GGTCTC	1 cut(s)	1021
Eco32I	GATATC	1 cut(s)	2065
Eco47I	GGWCC	5 cut(s)	245, 1028, 1170, 1256, 2240
Eco53kI	GAGCTC	1 cut(s)	2864
Eco57I	CTGAAG	2 cut(s)	729, 2457
Eco88I	CYCGRG	1 cut(s)	1222
EcoICRI	GAGCTC	1 cut(s)	2864
EcoO109I	RGGNCCY	1 cut(s)	2446
EcoRI	GAATTC	2 cut(s)	739, 815
EcoRII	CCWGG	2 cut(s)	2404, 2545
EcoRV	GATATC	1 cut(s)	2065
EcoT14I	CCWWGG	4 cut(s)	501, 657, 924, 1848
EcoT38I	GRGCYC	1 cut(s)	2866
ErhI	CCWWGG	4 cut(s)	501, 657, 924, 1848
FalI	AAGNNNNNCTT	8 cut(s)	1222, 1254, 1236, 1268, 1530, 1562, 1997, 2029
FauNDI	CATATG	1 cut(s)	1405
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	7 cut(s)	85, 186, 909, 1103, 1440, 2169, 2172
FokI	GGATG	4 cut(s)	5, 441, 1311, 2351
FriOI	GRGCYC	1 cut(s)	2866
Fsp4HI	GCNGC	7 cut(s)	85, 186, 909, 1103, 1440, 2169, 2172
FspBI	CTAG	9 cut(s)	138, 156, 206, 1059, 1152, 1890, 2415, 2498, 2935
GlaI	GCGC	1 cut(s)	2722
GluI	GCNGC	7 cut(s)	85, 186, 909, 1103, 1440, 2169, 2172
GsaI	CCCAGC	1 cut(s)	1313
HaeIII	GGCC	8 cut(s)	98, 389, 923, 1270, 1743, 1800, 2430, 2448
HapII	CCGG	5 cut(s)	23, 532, 1272, 2463, 2894
HgaI	GACGC	2 cut(s)	1094, 1947
HhaI	GCGC	1 cut(s)	2723
Hin1I	GRCGYC	1 cut(s)	1428
Hin6I	GCGC	1 cut(s)	2721
HinP1I	GCGC	1 cut(s)	2721
HindIII	AAGCTT	4 cut(s)	821, 952, 2096, 2198
HpaII	CCGG	5 cut(s)	23, 532, 1272, 2463, 2894
HphI	GGTGA	3 cut(s)	37, 1197, 2812
Hpy166II	GTNNAC	7 cut(s)	457, 524, 622, 1205, 1219, 1306, 1447
Hpy188I	TCNGA	5 cut(s)	106, 213, 738, 2716, 2878
Hpy8I	GTNNAC	7 cut(s)	457, 524, 622, 1205, 1219, 1306, 1447
Hpy99I	CGWCG	1 cut(s)	2921
HpyAV	CCTTC	9 cut(s)	342, 467, 680, 1061, 1346, 2327, 2372, 2515, 2840
HpyCH4III	ACNGT	6 cut(s)	802, 1050, 1159, 1972, 2032, 2711
HpyCH4IV	ACGT	5 cut(s)	453, 1428, 2325, 2526, 2916
HpyF10VI	GCNNNNNNNGC	9 cut(s)	191, 200, 407, 442, 586, 896, 905, 1955, 2468
HpyF3I	CTNAG	6 cut(s)	241, 297, 873, 1362, 2736, 2814
HpySE526I	ACGT	5 cut(s)	453, 1428, 2325, 2526, 2916
Hsp92I	GRCGYC	1 cut(s)	1428
HspAI	GCGC	1 cut(s)	2721
Kzo9I	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
LguI	GCTCTTC	2 cut(s)	570, 2139
LmnI	GCTCC	6 cut(s)	289, 359, 534, 969, 1148, 2549
Lsp1109I	GCAGC	7 cut(s)	71, 197, 895, 1114, 1426, 2158, 2180
LweI	GCATC	8 cut(s)	487, 505, 546, 895, 1549, 1836, 2119, 2650
MaeI	CTAG	9 cut(s)	138, 156, 206, 1059, 1152, 1890, 2415, 2498, 2935
MaeII	ACGT	5 cut(s)	453, 1428, 2325, 2526, 2916
MaeIII	GTNAC	8 cut(s)	250, 1050, 1375, 1408, 1940, 1959, 1993, 2326
MalI	GATC	9 cut(s)	210, 999, 1251, 1386, 1597, 1713, 2001, 2544, 2727
MboI	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	5 cut(s)	208, 997, 1384, 1711, 2725
MhlI	GDGCHC	3 cut(s)	306, 447, 2866
MlsI	TGGCCA	1 cut(s)	923
MluNI	TGGCCA	1 cut(s)	923
MlyI	GAGTC	5 cut(s)	170, 377, 486, 2099, 2652
MmeI	TCCRAC	4 cut(s)	881, 1141, 2218, 2424
Mox20I	TGGCCA	1 cut(s)	923
MscI	TGGCCA	1 cut(s)	923
MslI	CAYNNNNRTG	2 cut(s)	23, 92
Msp20I	TGGCCA	1 cut(s)	923
MspA1I	CMGCKG	1 cut(s)	2171
MspCI	CTTAAG	3 cut(s)	2014, 2068, 2099
MspI	CCGG	5 cut(s)	23, 532, 1272, 2463, 2894
MspR9I	CCNGG	6 cut(s)	23, 1272, 2406, 2464, 2547, 2894
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	2 cut(s)	2406, 2547
MwoI	GCNNNNNNNGC	9 cut(s)	191, 200, 407, 442, 586, 896, 905, 1955, 2468
NciI	CCSGG	4 cut(s)	23, 1272, 2464, 2894
NcoI	CCATGG	2 cut(s)	924, 1848
NdeI	CATATG	1 cut(s)	1405
NdeII	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
NlaIV	GGNNCC	3 cut(s)	303, 2447, 2551
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	6 cut(s)	250, 1050, 1375, 1408, 1959, 2326
NspI	RCATGY	2 cut(s)	230, 2914
NspV	TTCGAA	2 cut(s)	2141, 2572
PaeR7I	CTCGAG	1 cut(s)	1222
PagI	TCATGA	3 cut(s)	46, 1188, 2299
PasI	CCCWGGG	1 cut(s)	2405
PciI	ACATGT	2 cut(s)	226, 2910
PciSI	GCTCTTC	2 cut(s)	570, 2139
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	7 cut(s)	1185, 1277, 1480, 1631, 1779, 2533, 2803
PflMI	CCANNNNNTGG	2 cut(s)	1299, 2780
PfoI	TCCNGGA	1 cut(s)	2545
PkrI	GCNGC	7 cut(s)	86, 187, 910, 1104, 1441, 2170, 2173
PleI	GAGTC	5 cut(s)	169, 377, 485, 2098, 2651
PpsI	GAGTC	5 cut(s)	169, 377, 485, 2098, 2651
Ppu21I	YACGTR	1 cut(s)	454
PscI	ACATGT	2 cut(s)	226, 2910
PshBI	ATTAAT	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	2866
Psp6I	CCWGG	2 cut(s)	2404, 2545
PspFI	CCCAGC	1 cut(s)	1309
PspGI	CCWGG	2 cut(s)	2404, 2545
PspN4I	GGNNCC	3 cut(s)	303, 2447, 2551
PspXI	VCTCGAGB	1 cut(s)	1222
PstI	CTGCAG	3 cut(s)	196, 1444, 2797
PstNI	CAGNNNCTG	4 cut(s)	191, 800, 1634, 2813
PsuI	RGATCY	5 cut(s)	208, 997, 1384, 1711, 2725
PvuII	CAGCTG	1 cut(s)	2171
RsaI	GTAC	6 cut(s)	483, 525, 584, 2478, 2764, 2915
RsaNI	GTAC	6 cut(s)	482, 524, 583, 2477, 2763, 2914
RseI	CAYNNNNRTG	2 cut(s)	23, 92
SacI	GAGCTC	1 cut(s)	2866
SapI	GCTCTTC	2 cut(s)	570, 2139
SatI	GCNGC	7 cut(s)	85, 186, 909, 1103, 1440, 2169, 2172
Sau3AI	GATC	9 cut(s)	208, 997, 1249, 1384, 1595, 1711, 1999, 2542, 2725
ScaI	AGTACT	2 cut(s)	2478, 2764
SchI	GAGTC	5 cut(s)	170, 377, 486, 2099, 2652
ScrFI	CCNGG	6 cut(s)	23, 1272, 2406, 2464, 2547, 2894
SduI	GDGCHC	3 cut(s)	306, 447, 2866
SfaNI	GCATC	8 cut(s)	487, 505, 546, 895, 1549, 1836, 2119, 2650
SfcI	CTRYAG	4 cut(s)	192, 801, 1440, 2793
Sfr274I	CTCGAG	1 cut(s)	1222
SfuI	TTCGAA	2 cut(s)	2141, 2572
SinI	GGWCC	5 cut(s)	245, 1028, 1170, 1256, 2240
SlaI	CTCGAG	1 cut(s)	1222
SmiMI	CAYNNNNRTG	2 cut(s)	23, 92
SmlI	CTYRAG	4 cut(s)	1222, 2014, 2068, 2099
SmoI	CTYRAG	4 cut(s)	1222, 2014, 2068, 2099
SnaBI	TACGTA	1 cut(s)	454
SsiI	CCGC	1 cut(s)	844
SspI	AATATT	2 cut(s)	1929, 2216
SspMI	CTAG	9 cut(s)	138, 156, 206, 1059, 1152, 1890, 2415, 2498, 2935
SstI	GAGCTC	1 cut(s)	2866
StyD4I	CCNGG	6 cut(s)	21, 1270, 2404, 2462, 2545, 2892
StyI	CCWWGG	4 cut(s)	501, 657, 924, 1848
TaaI	ACNGT	6 cut(s)	802, 1050, 1159, 1972, 2032, 2711
TaiI	ACGT	5 cut(s)	456, 1431, 2328, 2529, 2919
TaqI	TCGA	5 cut(s)	1223, 1777, 1844, 2141, 2572
TaqII	GACCGA	1 cut(s)	2345
TatI	WGTACW	3 cut(s)	582, 2476, 2762
TfiI	GAWTC	7 cut(s)	1185, 1277, 1480, 1631, 1779, 2533, 2803
TscAI	CASTG	9 cut(s)	66, 187, 255, 351, 1053, 1366, 1449, 2155, 2545
TseFI	GTSAC	6 cut(s)	250, 1050, 1375, 1408, 1959, 2326
TseI	GCWGC	7 cut(s)	84, 185, 908, 1102, 1439, 2168, 2171
Tsp45I	GTSAC	6 cut(s)	250, 1050, 1375, 1408, 1959, 2326
TspDTI	ATGAA	9 cut(s)	35, 604, 906, 1590, 2196, 2210, 2288, 2610, 2731
TspRI	CASTG	9 cut(s)	66, 187, 255, 351, 1053, 1366, 1449, 2155, 2545
Van91I	CCANNNNNTGG	2 cut(s)	1299, 2780
Vha464I	CTTAAG	3 cut(s)	2014, 2068, 2099
VpaK11BI	GGWCC	5 cut(s)	245, 1028, 1170, 1256, 2240
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	7 cut(s)	739, 754, 815, 1081, 2567, 2586, 2694
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	2 cut(s)	230, 2914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2230
XhoI	CTCGAG	1 cut(s)	1222
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	9 cut(s)	138, 156, 206, 1059, 1152, 1890, 2415, 2498, 2935
ZraI	GACGTC	1 cut(s)	1429
ZrmI	AGTACT	2 cut(s)	2478, 2764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.