Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

25924634 .. 25936277

Gene Structure 11644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG160500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGTTGCTGAAGAACCCTTCTCATCAACTTAAGGTTGCTCTGTCAATCTTTTTCTTTCTTTCTTCTTCACTTTATTTGGCCACTCCAGAAAACAAAACCATTATTCGAGTTAATGTGGGGATTATTCTTGACGACTATAAACATTCACTGACTGGAAAGATTTGGTTGAGTTCCATAAAAATGGCCCTCACCGACTTCTATGCTTCTCATGCTCTTCACAACACTAAACTGCTCTTGAACATCAGGAACTCAAAAGGCAATGTTGTTCGTGCAGCTAACGCAGCTCAACATCTCATGAAACATGAACAAGTGCAAGCGATTATCGGACCAGTCACGTCAATGGAGACAAACTTCGTTATTAACCTCGGGGATCAAACCCATGTGCCCATATTATCATTTTCTGCAACAAGCCCTTCTCTTACTTCACTTCGGAGTTCCTACTTTTTCCAATTTGCGCAAAATGACACATCTCAAGTAGAAGCTATTAGTGCTGTTGTTAAGGCTTTTGGATGGAGAGAAGTTGTGCCCATCTACTTAGACACTTCATACGGCGAGGGAATCATCCCGGCTTTAACTAATGCCTTACAAGAGGTAGGTGCCTTTATCCCCTATAGGAGTGCCATTTCTCCATTCGCATCCGATGATCAAATTAAGGAAGAGCTTTACAAATTGATGACAATGCAAACTAGAGTGTTCATTGTCCACATGACCACCAATGATTTAATATGCTCTAAACTGTTTACCAAGGCAAACGAGATTGGAATGATGAAGGAAGGATATGTTTGGTTAACAGCTAACGGGATAGCTAATAGTTTACAGTTGTTAAATTCTTCAGTCATCCATTCCATGCATGGAGTGTTAGGTGTGGAAACTCATGTCCAACAAACCCCAGAGCTTGAAGGCTTGAAGATAAGGTGGAAAAAACAGTTCCAAAAAGATAATCCAACGATCATCTTTGGCGTTGAATTGGATGTTTTTGGTCTGTGGGCTTATGATGCTGCTTTTGCATTGGCTATGGCAATTGAGAAAGTATATGGACTAACTGCTTCCCACAACAACACAGATTATAAAAGTTTTCATGTCTCTCAATATGGTCCAAAACTTCGCAAAGCCCTGTCAACTACTAGATTTCAAGGCATGGCTGGAGATTTCAGGCTTGTTGATGGACAGCTTCAATCATCAGAGTTTCAAATAATTAATGTAAATAGTGGAGGATCAAGAACAATAGGATTTTGGTCACCGGAATATGGATTATGGAACCACGTGTACCCAGCAAATTCTAAGACAAATCTAGGACCTGTTATATGGCCAGGAGATTCTACCTCGGTTCCAAAGGGATGGGAGATCCCAACAAATGGGAAGACGTTGAAAATAGGAGTTCCTAAGAAGTATGGGTATCTTGAGTTTGTTAAGGTCACGAAAGATCCAAGGACTAACATAACAGATGTCACTGGGTTCTGTATTGATGTCTTTAAGGCAGTTATGGAAGTATTACCATATGCTCTTCCATATGAGTTCATTCCTTTTACAAAGCAAGATGGCACGAGCGCTGGTAGTTATAATGATTTGTGCTATGAAGTATATCGCGGGAACCTTGATGCAGTGGTCGGAGATATCACAATCCTAGCAAATAGGTCACTCTATGTGGACTATACAATGCCATACACAGAAGCAGGTCTAGTCATGGTAGTGCCTGTTGTAGACATGACCAGCAAAAGTTCCTGGGATTTCTTGAAGCCTTGGAAATGGGACCTTTGGCTAACAACTTCTTGTTTCTTCCTTTTTATCGGTTTTGTGGTTTGGGTCCTCGAACATCGAATTAATAAACATTTTCGGGGCCCTCTCGCACATCAAATTGGCCACGGTCTATGGTTCTCCTTTTCAACCATGGTTTTTGCCCAAACAGCAAGAGTTATTAGCAATCTGGCTAGATTCGTGATGACTATATGGATATTTGTTGTGCTAGTATTGACGATAAATTACACGGCCATCCTAACGTCAATCTATACAGTCCAACAACTCCAGCCAACTGTTACAGATTTAAAGGATCTATTAAGCAAGGGGGACAACGTCGGCTGCAAGCCAAATGCTTACACTTGCGACATCTTGAAACAATTTGGTTTTAATGATGCCAATCTTAAGGTGTTTAGTACTATGGAAGAACTTGATGAAGCACTTTCGAAAGGGAATGCAAAAGGTGGTATTGCTGCTGCTATTGATGAAACCCCATATATGAAGCTTTTCCTTGCAAAATATTGCAACAAATATACCATGATTGGACCCATATTTAAAACTGATGGTTTTGCCTATGTCTTTCCAAAACGTTCCCCTCTTCTGTCTGATGTTTCACAGGCAATCCTGAATGTGACTGGAGGAGAGAAGATAATGAACATCGAACATGAATGGTTCAAGAAAGAAAGCAATTGTCAAGATTTGGGACACCCAAAAGTTTCTAGCAGCAGTCTTGGTGCTGATAGCTTTTGGGTCCTTTTCCTCATTGCCGGAGTAGTTTCTTTGTTCGCTCTCATAGTATTTGTAGTTTTGTTCACTTACAAGTACAGGGACATATGGAATTCAGAAGCCTCTATAAGGAGTTCGATTGGGGCCATGTTAAAAATTTTCAATGAAAAAGACCCCAGCTATCACACTTTTAACAGTGATCAAAGGCCAGAAGCAGCAGAAATTTCAGTCTACAATAATTCGAACCACACAGATGAGCATTCTTTATTTTCTGGAGAGCAGCAAGTACTCTCAATTGAAGGGTCTCAAGAAGCAGGTCCCGCAACCGAGGTTCGTTTCGCAACTGAAATTGAAATGACGACTCCTTATACAGCTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

946

Amino Acids

105.87

Weight (kDa)

6.48

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	50 - 405	1.2e-20	Periplasmic binding protein
ANF_receptor	PF01094	55 - 402	5.2e-76	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	472 - 564	1.8e-08	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	583 - 836	3.5e-31	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1068, 1560
Acc16I	TGCGCA	1 cut(s)	456
Acc36I	ACCTGC	2 cut(s)	1664, 2765
AccB1I	GGYRCC	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	1355
AccI	GTMKAC	2 cut(s)	1701, 2691
AccII	CGCG	1 cut(s)	1587
AciI	CCGC	2 cut(s)	1587, 2781
AclI	AACGTT	1 cut(s)	2323
AclWI	GGATC	5 cut(s)	378, 1222, 1339, 1418, 2055
AcoI	YGGCCR	4 cut(s)	78, 1307, 1858, 1986
AcsI	RAATTY	5 cut(s)	826, 1276, 2572, 2616, 2682
AcuI	CTGAAG	2 cut(s)	29, 816
AcvI	CACGTG	1 cut(s)	1264
AfaI	GTAC	4 cut(s)	1268, 2152, 2558, 2748
AfeI	AGCGCT	1 cut(s)	1549
AfiI	CCNNNNNNNGG	3 cut(s)	1247, 1355, 2589
AflII	CTTAAG	2 cut(s)	29, 2138
AflIII	ACRYGT	1 cut(s)	1263
AjiI	CACGTC	1 cut(s)	336
AjnI	CCWGG	2 cut(s)	1309, 1721
Alw26I	GTCTC	3 cut(s)	338, 1087, 2769
AlwI	GGATC	5 cut(s)	378, 1222, 1339, 1418, 2055
Ama87I	CYCGRG	1 cut(s)	365
Aor51HI	AGCGCT	1 cut(s)	1549
AoxI	GGCC	8 cut(s)	78, 183, 1307, 1837, 1858, 1986, 2604, 2666
ApaI	GGGCCC	1 cut(s)	1841
ApeKI	GCWGC	9 cut(s)	272, 281, 998, 2076, 2207, 2210, 2457, 2675, 2740
ApoI	RAATTY	5 cut(s)	826, 1276, 2572, 2616, 2682
AseI	ATTAAT	2 cut(s)	1197, 1821
Asp700I	GAANNNNTTC	1 cut(s)	2240
AspLEI	GCGC	2 cut(s)	457, 1550
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	181, 1230
AsuII	TTCGAA	2 cut(s)	2180, 2702
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	8 cut(s)	326, 1094, 1295, 1750, 1804, 2279, 2485, 2777
BaeGI	GKGCMC	3 cut(s)	387, 528, 1841
BalI	TGGCCA	3 cut(s)	80, 1309, 1860
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	1841
BauI	CACGAG	1 cut(s)	1543
BbrPI	CACGTG	1 cut(s)	1264
BbsI	GAAGAC	1 cut(s)	1367
BbvI	GCAGC	9 cut(s)	284, 293, 985, 2063, 2194, 2197, 2469, 2687, 2752
BccI	CCATC	7 cut(s)	504, 536, 1157, 1332, 1532, 1997, 2291
BceAI	ACGGC	2 cut(s)	565, 2001
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	1311, 1723
BclI	TGATCA	2 cut(s)	643, 2659
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	3 cut(s)	338, 1087, 2769
BfaI	CTAG	9 cut(s)	687, 1125, 1292, 1625, 1679, 1929, 1964, 2454, 2839
BfmI	CTRYAG	1 cut(s)	610
BfoI	RGCGCY	1 cut(s)	1551
BfrI	CTTAAG	2 cut(s)	29, 2138
BfuAI	ACCTGC	2 cut(s)	1664, 2765
BisI	GCNGC	9 cut(s)	273, 282, 999, 2077, 2208, 2211, 2458, 2676, 2741
BlsI	GCNGC	9 cut(s)	274, 283, 1000, 2078, 2209, 2212, 2459, 2677, 2742
BmcAI	AGTACT	2 cut(s)	2152, 2748
Bme1390I	CCNGG	3 cut(s)	566, 1311, 1723
Bme18I	GGWCC	8 cut(s)	326, 1094, 1295, 1750, 1804, 2279, 2485, 2777
BmeT110I	CYCGRG	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	336
BmrFI	CCNGG	3 cut(s)	566, 1311, 1723
BmrI	ACTGGG	1 cut(s)	1461
BmsI	GCATC	4 cut(s)	644, 985, 1588, 2119
BmuI	ACTGGG	1 cut(s)	1461
BpiI	GAAGAC	1 cut(s)	1367
BpmI	CTGGAG	5 cut(s)	69, 1164, 2006, 2391, 2754
Bpu14I	TTCGAA	2 cut(s)	2180, 2702
BpuEI	CTTGAG	3 cut(s)	456, 1421, 2751
BpuMI	CCSGG	1 cut(s)	566
BsaAI	YACGTR	1 cut(s)	1264
BsaBI	GATNNNNATC	1 cut(s)	2133
BsaI	GGTCTC	1 cut(s)	2769
BsaJI	CCNNGG	9 cut(s)	364, 744, 1323, 1427, 1722, 1739, 1861, 1887, 2787
BsaWI	WCCGGW	1 cut(s)	1240
Bsc4I	CCNNNNNNNGG	3 cut(s)	1247, 1355, 2589
Bse1I	ACTGG	4 cut(s)	157, 329, 1456, 2374
Bse3DI	GCAATG	2 cut(s)	265, 2496
Bse8I	GATNNNNATC	1 cut(s)	2133
BseBI	CCWGG	2 cut(s)	1311, 1723
BseDI	CCNNGG	9 cut(s)	364, 744, 1323, 1427, 1722, 1739, 1861, 1887, 2787
BseGI	GGATG	7 cut(s)	515, 561, 635, 837, 976, 1343, 1989
BseJI	GATNNNNATC	1 cut(s)	2133
BseLI	CCNNNNNNNGG	3 cut(s)	1247, 1355, 2589
BseMI	GCAATG	2 cut(s)	265, 2496
BseNI	ACTGG	4 cut(s)	157, 329, 1456, 2374
BseRI	GAGGAG	1 cut(s)	2388
BseSI	GKGCMC	3 cut(s)	387, 528, 1841
BseXI	GCAGC	9 cut(s)	284, 293, 985, 2063, 2194, 2197, 2469, 2687, 2752
BseYI	CCCAGC	2 cut(s)	1270, 2636
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	1587
BshFI	GGCC	8 cut(s)	80, 185, 1309, 1839, 1860, 1988, 2606, 2668
BshNI	GGYRCC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	566, 1241, 2502
BslFI	GGGAC	5 cut(s)	1763, 2078, 2451, 2576, 2763
BslI	CCNNNNNNNGG	3 cut(s)	1247, 1355, 2589
BsmAI	GTCTC	3 cut(s)	338, 1087, 2769
BsmFI	GGGAC	5 cut(s)	1763, 2078, 2451, 2576, 2763
BsmI	GAATGC	2 cut(s)	2194, 2719
BsnI	GGCC	8 cut(s)	80, 185, 1309, 1839, 1860, 1988, 2606, 2668
Bso31I	GGTCTC	1 cut(s)	2769
BsoBI	CYCGRG	1 cut(s)	365
Bsp119I	TTCGAA	2 cut(s)	2180, 2702
Bsp120I	GGGCCC	1 cut(s)	1837
Bsp1286I	GDGCHC	3 cut(s)	387, 528, 1841
Bsp143I	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
Bsp19I	CCATGG	1 cut(s)	1887
BspACI	CCGC	2 cut(s)	1587, 2781
BspANI	GGCC	8 cut(s)	80, 185, 1309, 1839, 1860, 1988, 2606, 2668
BspFNI	CGCG	1 cut(s)	1587
BspHI	TCATGA	1 cut(s)	294
BspMI	ACCTGC	2 cut(s)	1664, 2765
BspPI	GGATC	5 cut(s)	378, 1222, 1339, 1418, 2055
BspQI	GCTCTTC	3 cut(s)	219, 651, 1509
BspT104I	TTCGAA	2 cut(s)	2180, 2702
BspT107I	GGYRCC	1 cut(s)	596
BspTI	CTTAAG	2 cut(s)	29, 2138
BspTNI	GGTCTC	1 cut(s)	2769
BsrDI	GCAATG	2 cut(s)	265, 2496
BsrI	ACTGG	4 cut(s)	157, 329, 1456, 2374
BssECI	CCNNGG	9 cut(s)	364, 744, 1323, 1427, 1722, 1739, 1861, 1887, 2787
BssMI	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
BssSI	CACGAG	1 cut(s)	1543
BssT1I	CCWWGG	4 cut(s)	744, 1427, 1739, 1887
Bst2BI	CACGAG	1 cut(s)	1543
Bst2UI	CCWGG	2 cut(s)	1311, 1723
Bst4CI	ACNGT	7 cut(s)	738, 819, 927, 1865, 2011, 2032, 2657
Bst6I	CTCTTC	4 cut(s)	219, 651, 1509, 2337
BstAFI	CTTAAG	2 cut(s)	29, 2138
BstBAI	YACGTR	1 cut(s)	1264
BstBI	TTCGAA	2 cut(s)	2180, 2702
BstC8I	GCNNGC	2 cut(s)	315, 2081
BstDEI	CTNAG	3 cut(s)	535, 1281, 1383
BstDSI	CCRYGG	2 cut(s)	1861, 1887
BstEII	GGTNACC	1 cut(s)	1236
BstENI	CCTNNNNNAGG	1 cut(s)	2587
BstF5I	GGATG	7 cut(s)	515, 561, 635, 837, 976, 1343, 1989
BstFNI	CGCG	1 cut(s)	1587
BstH2I	RGCGCY	1 cut(s)	1551
BstHHI	GCGC	2 cut(s)	457, 1550
BstKTI	GATC	8 cut(s)	373, 646, 951, 1217, 1347, 1426, 2050, 2662
BstMAI	GTCTC	3 cut(s)	338, 1087, 2769
BstMBI	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
BstMWI	GCNNNNNNNGC	8 cut(s)	209, 278, 281, 488, 995, 1004, 1904, 2780
BstNI	CCWGG	2 cut(s)	1311, 1723
BstPI	GGTNACC	1 cut(s)	1236
BstSCI	CCNGG	3 cut(s)	564, 1309, 1721
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	3 cut(s)	387, 528, 1841
BstUI	CGCG	1 cut(s)	1587
BstV1I	GCAGC	9 cut(s)	284, 293, 985, 2063, 2194, 2197, 2469, 2687, 2752
BstV2I	GAAGAC	1 cut(s)	1367
BstX2I	RGATCY	3 cut(s)	1344, 1423, 2047
BstXI	CCANNNNNNTGG	2 cut(s)	181, 1338
BstYI	RGATCY	3 cut(s)	1344, 1423, 2047
BsuRI	GGCC	8 cut(s)	80, 185, 1309, 1839, 1860, 1988, 2606, 2668
BtgI	CCRYGG	2 cut(s)	1861, 1887
BtrI	CACGTC	1 cut(s)	336
BtsCI	GGATG	7 cut(s)	515, 561, 635, 837, 976, 1343, 1989
BtsI	GCAGTG	1 cut(s)	1608
BtsIMutI	CAGTG	4 cut(s)	146, 1449, 1608, 2662
BveI	ACCTGC	2 cut(s)	1664, 2765
Cac8I	GCNNGC	2 cut(s)	315, 2081
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	2 cut(s)	457, 1550
Csp6I	GTAC	4 cut(s)	1267, 2151, 2557, 2747
CviQI	GTAC	4 cut(s)	1267, 2151, 2557, 2747
DdeI	CTNAG	3 cut(s)	535, 1281, 1383
DpnI	GATC	8 cut(s)	372, 645, 950, 1216, 1346, 1425, 2049, 2661
DpnII	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
DraI	TTTAAA	2 cut(s)	2043, 2290
EaeI	YGGCCR	4 cut(s)	78, 1307, 1858, 1986
Eam1104I	CTCTTC	4 cut(s)	219, 651, 1509, 2337
EarI	CTCTTC	4 cut(s)	219, 651, 1509, 2337
Eco130I	CCWWGG	4 cut(s)	744, 1427, 1739, 1887
Eco24I	GRGCYC	1 cut(s)	1841
Eco31I	GGTCTC	1 cut(s)	2769
Eco32I	GATATC	1 cut(s)	1615
Eco47I	GGWCC	8 cut(s)	326, 1094, 1295, 1750, 1804, 2279, 2485, 2777
Eco47III	AGCGCT	1 cut(s)	1549
Eco57I	CTGAAG	2 cut(s)	29, 816
Eco72I	CACGTG	1 cut(s)	1264
Eco88I	CYCGRG	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	1236
EcoNI	CCTNNNNNAGG	1 cut(s)	2587
EcoO109I	RGGNCCY	7 cut(s)	1295, 1750, 1804, 1837, 1838, 2485, 2777
EcoO65I	GGTNACC	1 cut(s)	1236
EcoRI	GAATTC	1 cut(s)	2572
EcoRII	CCWGG	2 cut(s)	1309, 1721
EcoRV	GATATC	1 cut(s)	1615
EcoT14I	CCWWGG	4 cut(s)	744, 1427, 1739, 1887
EcoT22I	ATGCAT	1 cut(s)	852
EcoT38I	GRGCYC	1 cut(s)	1841
ErhI	CCWWGG	4 cut(s)	744, 1427, 1739, 1887
FaqI	GGGAC	5 cut(s)	1763, 2078, 2451, 2576, 2763
FauI	CCCGC	2 cut(s)	1580, 2788
FauNDI	CATATG	3 cut(s)	1498, 1510, 2567
FbaI	TGATCA	2 cut(s)	643, 2659
FblI	GTMKAC	2 cut(s)	1701, 2691
Fnu4HI	GCNGC	9 cut(s)	273, 282, 999, 2077, 2208, 2211, 2458, 2676, 2741
FokI	GGATG	7 cut(s)	522, 548, 622, 824, 983, 1350, 1976
FriOI	GRGCYC	1 cut(s)	1841
Fsp4HI	GCNGC	9 cut(s)	273, 282, 999, 2077, 2208, 2211, 2458, 2676, 2741
FspBI	CTAG	9 cut(s)	687, 1125, 1292, 1625, 1679, 1929, 1964, 2454, 2839
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	2 cut(s)	456, 1549
GluI	GCNGC	9 cut(s)	273, 282, 999, 2077, 2208, 2211, 2458, 2676, 2741
GsaI	CCCAGC	2 cut(s)	1274, 2640
GsuI	CTGGAG	5 cut(s)	69, 1164, 2006, 2391, 2754
HaeII	RGCGCY	1 cut(s)	1551
HaeIII	GGCC	8 cut(s)	80, 185, 1309, 1839, 1860, 1988, 2606, 2668
HapII	CCGG	3 cut(s)	566, 1241, 2502
HhaI	GCGC	2 cut(s)	457, 1550
Hin6I	GCGC	2 cut(s)	455, 1548
HinP1I	GCGC	2 cut(s)	455, 1548
HincII	GTYRAC	2 cut(s)	789, 1119
HindII	GTYRAC	2 cut(s)	789, 1119
HindIII	AAGCTT	1 cut(s)	2237
HinfI	GANTC	4 cut(s)	558, 1316, 1932, 2821
HpaI	GTTAAC	1 cut(s)	789
HpaII	CCGG	3 cut(s)	566, 1241, 2502
HphI	GGTGA	2 cut(s)	181, 1230
Hpy188I	TCNGA	7 cut(s)	326, 432, 640, 1183, 1610, 2341, 2578
Hpy99I	CGWCG	1 cut(s)	2075
HpyAV	CCTTC	6 cut(s)	27, 423, 763, 767, 893, 2753
HpyCH4III	ACNGT	7 cut(s)	738, 819, 927, 1865, 2011, 2032, 2657
HpyCH4IV	ACGT	6 cut(s)	335, 1263, 1364, 1997, 2070, 2323
HpyF10VI	GCNNNNNNNGC	8 cut(s)	209, 278, 281, 488, 995, 1004, 1904, 2780
HpyF3I	CTNAG	3 cut(s)	535, 1281, 1383
HpySE526I	ACGT	6 cut(s)	335, 1263, 1364, 1997, 2070, 2323
HspAI	GCGC	2 cut(s)	455, 1548
Ksp22I	TGATCA	2 cut(s)	643, 2659
KspAI	GTTAAC	1 cut(s)	789
Kzo9I	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
LguI	GCTCTTC	3 cut(s)	219, 651, 1509
Lsp1109I	GCAGC	9 cut(s)	284, 293, 985, 2063, 2194, 2197, 2469, 2687, 2752
LweI	GCATC	4 cut(s)	644, 985, 1588, 2119
MaeI	CTAG	9 cut(s)	687, 1125, 1292, 1625, 1679, 1929, 1964, 2454, 2839
MaeII	ACGT	6 cut(s)	335, 1263, 1364, 1997, 2070, 2323
MaeIII	GTNAC	7 cut(s)	331, 1236, 1414, 1447, 1635, 2032, 2365
MalI	GATC	8 cut(s)	372, 645, 950, 1216, 1346, 1425, 2049, 2661
MboI	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
MfeI	CAATTG	3 cut(s)	1020, 2422, 2754
MflI	RGATCY	3 cut(s)	1344, 1423, 2047
MhlI	GDGCHC	3 cut(s)	387, 528, 1841
MlsI	TGGCCA	3 cut(s)	80, 1309, 1860
MluNI	TGGCCA	3 cut(s)	80, 1309, 1860
MlyI	GAGTC	1 cut(s)	2815
MmeI	TCCRAC	4 cut(s)	904, 968, 1588, 2038
Mox20I	TGGCCA	3 cut(s)	80, 1309, 1860
Mph1103I	ATGCAT	1 cut(s)	852
MroXI	GAANNNNTTC	1 cut(s)	2240
MscI	TGGCCA	3 cut(s)	80, 1309, 1860
MslI	CAYNNNNRTG	4 cut(s)	179, 338, 1688, 2712
Msp20I	TGGCCA	3 cut(s)	80, 1309, 1860
MspCI	CTTAAG	2 cut(s)	29, 2138
MspI	CCGG	3 cut(s)	566, 1241, 2502
MspR9I	CCNGG	3 cut(s)	566, 1311, 1723
MunI	CAATTG	3 cut(s)	1020, 2422, 2754
Mva1269I	GAATGC	2 cut(s)	2194, 2719
MvaI	CCWGG	2 cut(s)	1311, 1723
MvnI	CGCG	1 cut(s)	1587
MwoI	GCNNNNNNNGC	8 cut(s)	209, 278, 281, 488, 995, 1004, 1904, 2780
NciI	CCSGG	1 cut(s)	566
NcoI	CCATGG	1 cut(s)	1887
NdeI	CATATG	3 cut(s)	1498, 1510, 2567
NdeII	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
NmuCI	GTSAC	6 cut(s)	331, 1236, 1414, 1447, 1635, 2365
NsbI	TGCGCA	1 cut(s)	456
NsiI	ATGCAT	1 cut(s)	852
NspV	TTCGAA	2 cut(s)	2180, 2702
PagI	TCATGA	1 cut(s)	294
PciSI	GCTCTTC	3 cut(s)	219, 651, 1509
PctI	GAATGC	2 cut(s)	2194, 2719
PdmI	GAANNNNTTC	1 cut(s)	2240
PfeI	GAWTC	3 cut(s)	558, 1316, 1932
PflFI	GACNNNGTC	1 cut(s)	2069
PflMI	CCANNNNNTGG	1 cut(s)	1355
PkrI	GCNGC	9 cut(s)	274, 283, 1000, 2078, 2209, 2212, 2459, 2677, 2742
PleI	GAGTC	1 cut(s)	2815
PmaCI	CACGTG	1 cut(s)	1264
PmlI	CACGTG	1 cut(s)	1264
PpsI	GAGTC	1 cut(s)	2815
Ppu21I	YACGTR	1 cut(s)	1264
PpuMI	RGGWCCY	5 cut(s)	1295, 1750, 1804, 2485, 2777
PshBI	ATTAAT	2 cut(s)	1197, 1821
PsiI	TTATAA	2 cut(s)	1068, 1560
Psp1406I	AACGTT	1 cut(s)	2323
Psp5II	RGGWCCY	5 cut(s)	1295, 1750, 1804, 2485, 2777
Psp6I	CCWGG	2 cut(s)	1309, 1721
PspCI	CACGTG	1 cut(s)	1264
PspEI	GGTNACC	1 cut(s)	1236
PspFI	CCCAGC	2 cut(s)	1270, 2636
PspGI	CCWGG	2 cut(s)	1309, 1721
PspOMI	GGGCCC	1 cut(s)	1837
PspPPI	RGGWCCY	5 cut(s)	1295, 1750, 1804, 2485, 2777
PsrI	GAACNNNNNNTAC	2 cut(s)	1250, 1282
PsuI	RGATCY	3 cut(s)	1344, 1423, 2047
PsyI	GACNNNGTC	1 cut(s)	2069
RsaI	GTAC	4 cut(s)	1268, 2152, 2558, 2748
RsaNI	GTAC	4 cut(s)	1267, 2151, 2557, 2747
RseI	CAYNNNNRTG	4 cut(s)	179, 338, 1688, 2712
SapI	GCTCTTC	3 cut(s)	219, 651, 1509
SatI	GCNGC	9 cut(s)	273, 282, 999, 2077, 2208, 2211, 2458, 2676, 2741
Sau3AI	GATC	8 cut(s)	370, 643, 948, 1214, 1344, 1423, 2047, 2659
ScaI	AGTACT	2 cut(s)	2152, 2748
SchI	GAGTC	1 cut(s)	2815
ScrFI	CCNGG	3 cut(s)	566, 1311, 1723
SduI	GDGCHC	3 cut(s)	387, 528, 1841
SfaNI	GCATC	4 cut(s)	644, 985, 1588, 2119
SfcI	CTRYAG	1 cut(s)	610
SfuI	TTCGAA	2 cut(s)	2180, 2702
SinI	GGWCC	8 cut(s)	326, 1094, 1295, 1750, 1804, 2279, 2485, 2777
SmiMI	CAYNNNNRTG	4 cut(s)	179, 338, 1688, 2712
SmlI	CTYRAG	5 cut(s)	29, 471, 1400, 2138, 2766
SmoI	CTYRAG	5 cut(s)	29, 471, 1400, 2138, 2766
SsiI	CCGC	2 cut(s)	1587, 2781
SspI	AATATT	1 cut(s)	2255
SspMI	CTAG	9 cut(s)	687, 1125, 1292, 1625, 1679, 1929, 1964, 2454, 2839
StyD4I	CCNGG	3 cut(s)	564, 1309, 1721
StyI	CCWWGG	4 cut(s)	744, 1427, 1739, 1887
TaaI	ACNGT	7 cut(s)	738, 819, 927, 1865, 2011, 2032, 2657
TaiI	ACGT	6 cut(s)	338, 1266, 1367, 2000, 2073, 2326
TaqI	TCGA	7 cut(s)	106, 1809, 1816, 2180, 2394, 2597, 2702
TatI	WGTACW	3 cut(s)	2150, 2556, 2746
TfiI	GAWTC	3 cut(s)	558, 1316, 1932
TscAI	CASTG	4 cut(s)	153, 1456, 1608, 2662
TseFI	GTSAC	6 cut(s)	331, 1236, 1414, 1447, 1635, 2365
TseI	GCWGC	9 cut(s)	272, 281, 998, 2076, 2207, 2210, 2457, 2675, 2740
Tsp45I	GTSAC	6 cut(s)	331, 1236, 1414, 1447, 1635, 2365
TspRI	CASTG	4 cut(s)	153, 1456, 1608, 2662
Tth111I	GACNNNGTC	1 cut(s)	2069
Van91I	CCANNNNNTGG	1 cut(s)	1355
Vha464I	CTTAAG	2 cut(s)	29, 2138
VpaK11BI	GGWCC	8 cut(s)	326, 1094, 1295, 1750, 1804, 2279, 2485, 2777
VspI	ATTAAT	2 cut(s)	1197, 1821
XagI	CCTNNNNNAGG	1 cut(s)	2587
XapI	RAATTY	5 cut(s)	826, 1276, 2572, 2616, 2682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XmiI	GTMKAC	2 cut(s)	1701, 2691
XmnI	GAANNNNTTC	1 cut(s)	2240
XspI	CTAG	9 cut(s)	687, 1125, 1292, 1625, 1679, 1929, 1964, 2454, 2839
ZrmI	AGTACT	2 cut(s)	2152, 2748
Zsp2I	ATGCAT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.