Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

15143750 .. 15149777

Gene Structure 6028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30094

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3117 bp

ATGAGCTCTATGGAGAATCAGAAGAGGAGTATCCTTGTTTTTTTCTCATGGATTTTCATGGTCGCCGCCATGGGAGCTGAAAGCACAACAACAATCCCAGTGAACGTGGGAGTTGTCGTAGACCTTGATGAACCGAGTGGGAAAATGTATTTGAGTTGCATCGAAATGGCGCTCTCGGATTTCTATGCTTCCCATGCTCACTACAAGACTAGGCTCGTTTTGAACACCAGGAATTCCAATGGTGATGTGGTTGGTGCAGCTGCCGCAGGGCTGATCCGGGTGGCCATTGGTTTCTCGATTTGCTCTTGGATTCGCTCCTGGCGGCGGCTCTACGTAGAACACCATGGTTGGGTGATGACAATGACAGGCACGCTGATAGGGGGCTACCATTCGTTGTTGGTGGCAGCTTTGATCAGAGTTGTTTTGGAACTGCGTAAATGGTGTCGGTACTGCATCCTTGGTTTGTTTCTTCGTCGGTGTTCCGTTTTGGGCCTAGTGGGTTGGTGGTTTGTTGGGCTTTGCCTTTGGTTAGATCTGATAAAGAATGTAGAAGTGAAAGCCATCCTAGGGCCGGTGTCGTCGATGCAGGCAAGTTTCGTTGTGAATCTAGGAGAGCAAGCTCATGTACCCATCATATCATTTTCTGCAACAAGCCCTTCTCTTACTTCACTTCAGAGTTCCTATTTTTTTCGGTTTGCACAAAATGACTTGAACCAAGTAAAAGCTATAAGTAGTATTGTTCAAAACTTTGGATGGAGACGAGTTGTGCCCATTTACGTAGACAATATGTACGGGGAAGGAGTCATACCTTTTCTAATTGATGCCTTGCAAGAGGTGGATGCTCATATCCCCCACAGAAGTTTAATTCATGAATTAGCCACTGATGACCAAATTGAAAAAGAGCTTTACAAGTTGATGACGATGCAGACTCGAGTCTTCATTGTGCATATGATGCCTAATCTTTCATCTCGGCTATTTGCTAAGGCAAAGGAGATGGGAATGATGAGTGAGGGTTATGTTTGGATCACAACTAATGGTATTGGAAATAATTTACGATCTATGGCTTCCGTCCTTGATTTGATGCAAGGCTTGTTAGGTGTAGAAAGTTATATTCCAAGGACATTGAAGCTTAGACAATTCATATCAAGGTGGAAAAGGAAATTCCAACAAGACAATCCAAAAATCATTGATGTTCAATTAGATTTTTTTGGATTGCGGGCATATGATGCTGCTTTTGCAGTAGCCATGGCATTTGAGAAAGTTGCCAATGTAAGTTTCAAATTCCAAAAGAGGAATGCTTCTTCCTTCAACTCAACAGATCTTGATACTTTTGAGGTCTCTCATTATGGTTCAAAACTTTCTCATGCATTATCCATTATTAATTTCAAAGGTATGGCTGGAAACTTCAATCTTGTTGATAGGCAACTTAATGTATCAACTTTTAAGATTGTTAATGTGAATGGGGATGCACCAAGAACAGTTGGATATTGGACACCAGAAAATGGAAAGGTAGTAAAGCGGTTGAATTCGACAAGAAGTAGAATATCAACTTCCATGTGCGATCTTCGACCTATTATATGGCCTGGAGAGTCATTATCGGTTCCTAAAGGGTGGGAGATCCCGACAAACGGTACGAAGTTAAGAATAGGAGTTCCTGTGAAGGAAGGTTTTCTAGAGTTTCTTAAAGTAACCAGATATCCAAGCACTAATACAGTGGATGTCACTGGGTTCGTTATTGACGTGTTTAAGGCCGTATTGGAGATCTTACCATATGCACTTCCTTATGAATTTATTCCCTTTGCAAAGGCTAATGGAAGCAGCGCTGGCACATACAATGATTTGGTGTATCAAGTATATATTGGGAATTTTGATGCTGTGCTTGGAGATGTAACGATTAGAGCAAATAGGTCATTGTATGTTGGCTTTACTATGCCATATACCGCAGTTGATGTAGTGATGGTTGTGCCAATACAAGACAAGAGGACCAAAAGTGCATGGGTTTTCTTGAAGCCTTTGACATGGGACCTTTGGATGACAACTTTATGTTTTTTCATCTTTATTGGTTTTGTTATTTGGGTGCTTGAACATCGAACAAATGACGATTTTCGTGGCTCTCCCTCCCATCAAATTGGCACAAGCTTCTGGTTCTCTTTCTCAACCATGGTTTTCTCACAAAGGGAGAGAGTGGTTAATAACTTGGCAAGATTTGTGATGATTATCTGGATATTCGTTGTGCTAATAGTGACACAGAGCTATACAGCTAGTCTAGCATCACTATTGACAGTCCAACAACTCCAACCAACTATTACCGATATAAATGATCTTTTGAGGAATTCAGAAAATGTGGGCTATTTGGCGAGTTCTTATATTTATGGTCTCCTGAGACAAAAAGGTTTTCATGATTCCAAGCTTAAAGAATATGGAGATATGGAAGAAATAGATAAAGCTCTTTCAAAGGGGAGTGCAAACGGTGGTATTGCTGCTATTGTTCATGAAACCCCCTATATGAAGCTTTTTGTATTTCCGAAAGGTTCTCCTCTTATACCCGATGTTTCACAAGCAATCCTCAATTTGACCGAAGGAGAGAAGATAATGAACATTGAAGACAAATGGATCAAAGAAAACAGTTGTAAAGATTCGAGTACCGAGAAATTTTACAGCAGTAGTCTTGGCCTTGAGAGCTTTTGGGTCCTATTTCTCATTGCTGGGGTAGCTTCAATAATCGCTCTCCTCATATTTGCAGCTTCCTTCATTCACAAGCATAAGCAAGTTTTGATGTCTACTGATTCAAGAGCTTCCAAGTGGAAAAGGATTAGGACCATGTTCAAGATTTTCAATGAAAAAGAACTGAGCTCTCGTACATATAAAAGTAGTAGTAAACATGAAGCTAGGATCGCTGGTGCTCCAGATGATGAAGTGAATGCCTCACCAAATGACAACTGGCCCAAAAGTCCATTCAGCCATACAAACCAGACGGATGGGACTTCTGTATTCTATCGACAGCAAGAAACGCCATCTCACGATCCAGTATCTCCGGAAATCGTTCCAACTGTTGAGCTTGCTTTCACTAATCAAGAAATGCATGCAATTCCGGAAACAACTCAAGAAAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

1038

Amino Acids

117.05

Weight (kDa)

8.83

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	177 - 489	1.8e-69	Receptor family ligand binding region
Peripla_BP_6	PF13458	178 - 422	1e-12	Periplasmic binding protein
SBP_bac_3	PF00497	573 - 873	1.6e-07	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	673 - 905	1.7e-40	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1502
AccI	GTMKAC	3 cut(s)	120, 780, 2780
AccIII	TCCGGA	2 cut(s)	3034, 3091
AciI	CCGC	7 cut(s)	66, 264, 322, 325, 1216, 1519, 1941
AclWI	GGATC	6 cut(s)	268, 1031, 1612, 2621, 2900, 3017
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	8 cut(s)	232, 1160, 1280, 1525, 1787, 1864, 2332, 2651
AcuI	CTGAAG	1 cut(s)	656
AfaI	GTAC	6 cut(s)	449, 627, 791, 1633, 2644, 2860
AfeI	AGCGCT	1 cut(s)	1822
AfiI	CCNNNNNNNGG	6 cut(s)	324, 349, 567, 571, 1502, 1628
AflIII	ACRYGT	1 cut(s)	1740
AjiI	CACGTC	1 cut(s)	1741
AjnI	CCWGG	3 cut(s)	227, 317, 1582
AjuI	GAANNNNNNNTTGG	4 cut(s)	1259, 1291, 2939, 2971
Alw21I	GWGCWC	3 cut(s)	8, 2855, 2905
Alw26I	GTCTC	4 cut(s)	751, 1342, 2377, 2381
AlwI	GGATC	6 cut(s)	268, 1031, 1612, 2621, 2900, 3017
Ama87I	CYCGRG	1 cut(s)	930
Aor13HI	TCCGGA	2 cut(s)	3034, 3091
Aor51HI	AGCGCT	1 cut(s)	1822
AoxI	GGCC	7 cut(s)	282, 490, 569, 1580, 1749, 2671, 2942
ApeKI	GCWGC	7 cut(s)	257, 260, 404, 1229, 1818, 2480, 2741
ApoI	RAATTY	8 cut(s)	232, 1160, 1280, 1525, 1787, 1864, 2332, 2651
AseI	ATTAAT	1 cut(s)	1380
Asp700I	GAANNNNTTC	3 cut(s)	1668, 1791, 3042
AspA2I	CCTAGG	1 cut(s)	565
AspLEI	GCGC	2 cut(s)	172, 1823
AspS9I	GGNCC	7 cut(s)	490, 569, 1983, 2023, 2689, 2817, 2943
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	254, 364, 2919
AvaI	CYCGRG	1 cut(s)	930
AvaII	GGWCC	4 cut(s)	1983, 2023, 2689, 2817
AvrII	CCTAGG	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	771
BalI	TGGCCA	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	8, 2855
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	2 cut(s)	928, 2610
Bbv12I	GWGCWC	3 cut(s)	8, 2855, 2905
BbvI	GCAGC	7 cut(s)	247, 269, 416, 1216, 1830, 2467, 2753
BccI	CCATC	8 cut(s)	569, 638, 747, 988, 1951, 2130, 2972, 3022
BceAI	ACGGC	1 cut(s)	1736
BciT130I	CCWGG	3 cut(s)	229, 319, 1584
BciVI	GTATCC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	4 cut(s)	751, 1342, 2377, 2381
BfaI	CTAG	8 cut(s)	210, 494, 566, 608, 1673, 2262, 2267, 2889
BfoI	RGCGCY	2 cut(s)	173, 1824
BfuI	GTATCC	1 cut(s)	41
BglII	AGATCT	3 cut(s)	532, 1318, 1761
BlnI	CCTAGG	1 cut(s)	565
Bme1390I	CCNGG	4 cut(s)	229, 278, 319, 1584
Bme18I	GGWCC	4 cut(s)	1983, 2023, 2689, 2817
BmeT110I	CYCGRG	1 cut(s)	930
BmgBI	CACGTC	1 cut(s)	1741
BmgT120I	GGNCC	7 cut(s)	490, 569, 1983, 2023, 2689, 2817, 2943
BmiI	GGNNCC	3 cut(s)	1602, 2024, 2690
BmrFI	CCNGG	4 cut(s)	229, 278, 319, 1584
BmrI	ACTGGG	2 cut(s)	92, 1734
BmuI	ACTGGG	2 cut(s)	92, 1734
BoxI	GACNNNNGTC	1 cut(s)	932
BpiI	GAAGAC	2 cut(s)	928, 2610
BpmI	CTGGAG	2 cut(s)	1605, 2889
Bpu10I	CCTNAGC	1 cut(s)	981
BpuEI	CTTGAG	2 cut(s)	2696, 3087
BpuMI	CCSGG	1 cut(s)	278
BsaAI	YACGTR	2 cut(s)	334, 778
BsaBI	GATNNNNATC	1 cut(s)	2216
BsaI	GGTCTC	2 cut(s)	1342, 2381
BsaJI	CCNNGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
BsaWI	WCCGGW	2 cut(s)	3034, 3091
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 1641, 1671
Bsc4I	CCNNNNNNNGG	6 cut(s)	324, 349, 567, 571, 1502, 1628
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	4 cut(s)	98, 1729, 2945, 3026
Bse3DI	GCAATG	1 cut(s)	2700
Bse8I	GATNNNNATC	1 cut(s)	2216
BseAI	TCCGGA	2 cut(s)	3034, 3091
BseBI	CCWGG	3 cut(s)	229, 319, 1584
BseDI	CCNNGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
BseGI	GGATG	8 cut(s)	453, 561, 758, 844, 1471, 1723, 2037, 2983
BseJI	GATNNNNATC	1 cut(s)	2216
BseLI	CCNNNNNNNGG	6 cut(s)	324, 349, 567, 571, 1502, 1628
BseMI	GCAATG	1 cut(s)	2700
BseMII	CTCAG	2 cut(s)	2372, 2840
BseNI	ACTGG	4 cut(s)	98, 1729, 2945, 3026
BseRI	GAGGAG	3 cut(s)	40, 2526, 2720
BseSI	GKGCMC	1 cut(s)	771
BseXI	GCAGC	7 cut(s)	247, 269, 416, 1216, 1830, 2467, 2753
BseYI	CCCAGC	1 cut(s)	2705
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	7 cut(s)	284, 492, 571, 1582, 1751, 2673, 2944
BsiHKAI	GWGCWC	3 cut(s)	8, 2855, 2905
BsiHKCI	CYCGRG	1 cut(s)	930
BsiSI	CCGG	4 cut(s)	277, 572, 3035, 3092
BslFI	GGGAC	2 cut(s)	2036, 2995
BslI	CCNNNNNNNGG	6 cut(s)	324, 349, 567, 571, 1502, 1628
BsmAI	GTCTC	4 cut(s)	751, 1342, 2377, 2381
BsmBI	CGTCTC	1 cut(s)	751
BsmFI	GGGAC	2 cut(s)	2036, 2995
BsmI	GAATGC	2 cut(s)	1300, 2926
BsnI	GGCC	7 cut(s)	284, 492, 571, 1582, 1751, 2673, 2944
Bso31I	GGTCTC	2 cut(s)	1342, 2381
BsoBI	CYCGRG	1 cut(s)	930
Bsp1286I	GDGCHC	4 cut(s)	8, 771, 2855, 2905
Bsp13I	TCCGGA	2 cut(s)	3034, 3091
Bsp19I	CCATGG	4 cut(s)	69, 343, 1245, 2160
BspACI	CCGC	7 cut(s)	66, 264, 322, 325, 1216, 1519, 1941
BspANI	GGCC	7 cut(s)	284, 492, 571, 1582, 1751, 2673, 2944
BspCNI	CTCAG	2 cut(s)	2373, 2841
BspEI	TCCGGA	2 cut(s)	3034, 3091
BspHI	TCATGA	3 cut(s)	868, 2398, 2491
BspLI	GGNNCC	3 cut(s)	1602, 2024, 2690
BspPI	GGATC	6 cut(s)	268, 1031, 1612, 2621, 2900, 3017
BspTNI	GGTCTC	2 cut(s)	1342, 2381
BsrDI	GCAATG	1 cut(s)	2700
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	4 cut(s)	98, 1729, 2945, 3026
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
BssT1I	CCWWGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
Bst2UI	CCWGG	3 cut(s)	229, 319, 1584
Bst4CI	ACNGT	7 cut(s)	1480, 1631, 1714, 2284, 2471, 2627, 3052
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	952, 1226
BstBAI	YACGTR	2 cut(s)	334, 778
BstC8I	GCNNGC	7 cut(s)	371, 588, 618, 1218, 1825, 3060, 3084
BstDEI	CTNAG	4 cut(s)	981, 1130, 2381, 2849
BstDSI	CCRYGG	4 cut(s)	69, 343, 1245, 2160
BstF5I	GGATG	8 cut(s)	453, 561, 758, 844, 1471, 1723, 2037, 2983
BstH2I	RGCGCY	2 cut(s)	173, 1824
BstHHI	GCGC	2 cut(s)	172, 1823
BstMAI	GTCTC	4 cut(s)	751, 1342, 2377, 2381
BstNI	CCWGG	3 cut(s)	229, 319, 1584
BstNSI	RCATGY	1 cut(s)	3086
BstPAI	GACNNNNGTC	1 cut(s)	932
BstSCI	CCNGG	4 cut(s)	227, 276, 317, 1582
BstSLI	GKGCMC	1 cut(s)	771
BstSNI	TACGTA	2 cut(s)	334, 778
BstV1I	GCAGC	7 cut(s)	247, 269, 416, 1216, 1830, 2467, 2753
BstV2I	GAAGAC	2 cut(s)	928, 2610
BstX2I	RGATCY	4 cut(s)	532, 1318, 1617, 1761
BstXI	CCANNNNNNTGG	2 cut(s)	2129, 2978
BstYI	RGATCY	4 cut(s)	532, 1318, 1617, 1761
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	7 cut(s)	284, 492, 571, 1582, 1751, 2673, 2944
BtgI	CCRYGG	4 cut(s)	69, 343, 1245, 2160
BtrI	CACGTC	1 cut(s)	1741
BtsCI	GGATG	8 cut(s)	453, 561, 758, 844, 1471, 1723, 2037, 2983
BtsIMutI	CAGTG	4 cut(s)	105, 879, 1719, 1722
Cac8I	GCNNGC	7 cut(s)	371, 588, 618, 1218, 1825, 3060, 3084
CciI	TCATGA	3 cut(s)	868, 2398, 2491
CfoI	GCGC	2 cut(s)	172, 1823
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	7 cut(s)	490, 569, 1983, 2023, 2689, 2817, 2943
Csp6I	GTAC	6 cut(s)	448, 626, 790, 1632, 2643, 2859
CviQI	GTAC	6 cut(s)	448, 626, 790, 1632, 2643, 2859
DdeI	CTNAG	4 cut(s)	981, 1130, 2381, 2849
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	2 cut(s)	6, 2853
Eco105I	TACGTA	2 cut(s)	334, 778
Eco130I	CCWWGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
Eco24I	GRGCYC	2 cut(s)	8, 2855
Eco31I	GGTCTC	2 cut(s)	1342, 2381
Eco32I	GATATC	1 cut(s)	1697
Eco47I	GGWCC	4 cut(s)	1983, 2023, 2689, 2817
Eco47III	AGCGCT	1 cut(s)	1822
Eco53kI	GAGCTC	2 cut(s)	6, 2853
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	930
EcoICRI	GAGCTC	2 cut(s)	6, 2853
EcoO109I	RGGNCCY	2 cut(s)	2023, 2689
EcoRI	GAATTC	3 cut(s)	232, 1525, 2332
EcoRII	CCWGG	3 cut(s)	227, 317, 1582
EcoRV	GATATC	1 cut(s)	1697
EcoT14I	CCWWGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
EcoT22I	ATGCAT	2 cut(s)	1369, 3084
EcoT38I	GRGCYC	2 cut(s)	8, 2855
ErhI	CCWWGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
Esp3I	CGTCTC	1 cut(s)	751
FaqI	GGGAC	2 cut(s)	2036, 2995
FauI	CCCGC	1 cut(s)	1209
FauNDI	CATATG	3 cut(s)	948, 1222, 1771
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	3 cut(s)	120, 780, 2780
FokI	GGATG	8 cut(s)	440, 548, 765, 851, 1478, 1730, 2044, 2990
FriOI	GRGCYC	2 cut(s)	8, 2855
FspBI	CTAG	8 cut(s)	210, 494, 566, 608, 1673, 2262, 2267, 2889
GlaI	GCGC	2 cut(s)	171, 1822
GsaI	CCCAGC	1 cut(s)	2709
GsuI	CTGGAG	2 cut(s)	1605, 2889
HaeII	RGCGCY	2 cut(s)	173, 1824
HaeIII	GGCC	7 cut(s)	284, 492, 571, 1582, 1751, 2673, 2944
HapII	CCGG	4 cut(s)	277, 572, 3035, 3092
HhaI	GCGC	2 cut(s)	172, 1823
Hin6I	GCGC	2 cut(s)	170, 1821
HinP1I	GCGC	2 cut(s)	170, 1821
HindIII	AAGCTT	4 cut(s)	1127, 2137, 2408, 2510
HpaII	CCGG	4 cut(s)	277, 572, 3035, 3092
HphI	GGTGA	3 cut(s)	254, 364, 2919
Hpy166II	GTNNAC	5 cut(s)	103, 121, 781, 2781, 2879
Hpy188I	TCNGA	7 cut(s)	21, 178, 416, 537, 675, 2338, 2526
Hpy8I	GTNNAC	5 cut(s)	103, 121, 781, 2781, 2879
Hpy99I	CGWCG	2 cut(s)	477, 583
HpyAV	CCTTC	7 cut(s)	666, 791, 1315, 1654, 1658, 2573, 2758
HpyCH4III	ACNGT	7 cut(s)	1480, 1631, 1714, 2284, 2471, 2627, 3052
HpyCH4IV	ACGT	4 cut(s)	105, 333, 777, 1740
HpyF3I	CTNAG	4 cut(s)	981, 1130, 2381, 2849
HpySE526I	ACGT	4 cut(s)	105, 333, 777, 1740
HspAI	GCGC	2 cut(s)	170, 1821
Kpn2I	TCCGGA	2 cut(s)	3034, 3091
Ksp22I	TGATCA	1 cut(s)	411
LmnI	GCTCC	3 cut(s)	74, 320, 2908
Lsp1109I	GCAGC	7 cut(s)	247, 269, 416, 1216, 1830, 2467, 2753
MaeI	CTAG	8 cut(s)	210, 494, 566, 608, 1673, 2262, 2267, 2889
MaeII	ACGT	4 cut(s)	105, 333, 777, 1740
MaeIII	GTNAC	4 cut(s)	1687, 1720, 1888, 2242
MboII	GAAGA	8 cut(s)	34, 461, 928, 1293, 1556, 2444, 2599, 2615
MflI	RGATCY	4 cut(s)	532, 1318, 1617, 1761
MhlI	GDGCHC	4 cut(s)	8, 771, 2855, 2905
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	4 cut(s)	810, 922, 942, 1598
MmeI	TCCRAC	5 cut(s)	1189, 1462, 2311, 2320, 3071
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	2 cut(s)	1369, 3084
MroI	TCCGGA	2 cut(s)	3034, 3091
MroXI	GAANNNNTTC	3 cut(s)	1668, 1791, 3042
MscI	TGGCCA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	4 cut(s)	277, 572, 3035, 3092
MspR9I	CCNGG	4 cut(s)	229, 278, 319, 1584
Mva1269I	GAATGC	2 cut(s)	1300, 2926
MvaI	CCWGG	3 cut(s)	229, 319, 1584
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	4 cut(s)	69, 343, 1245, 2160
NdeI	CATATG	3 cut(s)	948, 1222, 1771
NlaIV	GGNNCC	3 cut(s)	1602, 2024, 2690
NmeAIII	GCCGAG	1 cut(s)	949
NmuCI	GTSAC	2 cut(s)	1720, 2242
NsiI	ATGCAT	2 cut(s)	1369, 3084
NspI	RCATGY	1 cut(s)	3086
PaeI	GCATGC	1 cut(s)	3086
PaeR7I	CTCGAG	1 cut(s)	930
PagI	TCATGA	3 cut(s)	868, 2398, 2491
PcsI	WCGNNNNNNNCGW	1 cut(s)	1737
PctI	GAATGC	2 cut(s)	1300, 2926
PdmI	GAANNNNTTC	3 cut(s)	1668, 1791, 3042
PfeI	GAWTC	6 cut(s)	16, 310, 604, 2402, 2636, 2786
PflMI	CCANNNNNTGG	1 cut(s)	1502
PleI	GAGTC	4 cut(s)	809, 922, 941, 1597
PpsI	GAGTC	4 cut(s)	809, 922, 941, 1597
Ppu21I	YACGTR	2 cut(s)	334, 778
PpuMI	RGGWCCY	2 cut(s)	2023, 2689
PshAI	GACNNNNGTC	1 cut(s)	932
PshBI	ATTAAT	1 cut(s)	1380
Psp124BI	GAGCTC	2 cut(s)	8, 2855
Psp5II	RGGWCCY	2 cut(s)	2023, 2689
Psp6I	CCWGG	3 cut(s)	227, 317, 1582
PspFI	CCCAGC	1 cut(s)	2705
PspGI	CCWGG	3 cut(s)	227, 317, 1582
PspN4I	GGNNCC	3 cut(s)	1602, 2024, 2690
PspPI	GGNCC	7 cut(s)	490, 569, 1983, 2023, 2689, 2817, 2943
PspPPI	RGGWCCY	2 cut(s)	2023, 2689
PspXI	VCTCGAGB	1 cut(s)	930
PsuI	RGATCY	4 cut(s)	532, 1318, 1617, 1761
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	6 cut(s)	449, 627, 791, 1633, 2644, 2860
RsaNI	GTAC	6 cut(s)	448, 626, 790, 1632, 2643, 2859
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	2 cut(s)	8, 2855
Sau96I	GGNCC	7 cut(s)	490, 569, 1983, 2023, 2689, 2817, 2943
SchI	GAGTC	4 cut(s)	810, 922, 942, 1598
ScrFI	CCNGG	4 cut(s)	229, 278, 319, 1584
SduI	GDGCHC	4 cut(s)	8, 771, 2855, 2905
Sfr274I	CTCGAG	1 cut(s)	930
SinI	GGWCC	4 cut(s)	1983, 2023, 2689, 2817
SlaI	CTCGAG	1 cut(s)	930
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	3 cut(s)	930, 2675, 3102
SmoI	CTYRAG	3 cut(s)	930, 2675, 3102
SnaBI	TACGTA	2 cut(s)	334, 778
SphI	GCATGC	1 cut(s)	3086
SsiI	CCGC	7 cut(s)	66, 264, 322, 325, 1216, 1519, 1941
SspMI	CTAG	8 cut(s)	210, 494, 566, 608, 1673, 2262, 2267, 2889
SstI	GAGCTC	2 cut(s)	8, 2855
StyD4I	CCNGG	4 cut(s)	227, 276, 317, 1582
StyI	CCWWGG	7 cut(s)	69, 343, 457, 565, 1115, 1245, 2160
TaaI	ACNGT	7 cut(s)	1480, 1631, 1714, 2284, 2471, 2627, 3052
TaiI	ACGT	4 cut(s)	108, 336, 780, 1743
TaqI	TCGA	9 cut(s)	162, 296, 581, 931, 1529, 1567, 2089, 2639, 2998
TaqII	GACCGA	1 cut(s)	2591
TauI	GCSGC	4 cut(s)	68, 266, 325, 328
TfiI	GAWTC	6 cut(s)	16, 310, 604, 2402, 2636, 2786
TscAI	CASTG	4 cut(s)	105, 886, 1719, 1729
TseFI	GTSAC	2 cut(s)	1720, 2242
TseI	GCWGC	7 cut(s)	257, 260, 404, 1229, 1818, 2480, 2741
Tsp45I	GTSAC	2 cut(s)	1720, 2242
TspGWI	ACGGA	3 cut(s)	472, 1057, 2990
TspRI	CASTG	4 cut(s)	105, 886, 1719, 1729
Van91I	CCANNNNNTGG	1 cut(s)	1502
VpaK11BI	GGWCC	4 cut(s)	1983, 2023, 2689, 2817
VspI	ATTAAT	1 cut(s)	1380
XapI	RAATTY	8 cut(s)	232, 1160, 1280, 1525, 1787, 1864, 2332, 2651
XbaI	TCTAGA	1 cut(s)	1672
XceI	RCATGY	1 cut(s)	3086
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 2937
XhoI	CTCGAG	1 cut(s)	930
XmaJI	CCTAGG	1 cut(s)	565
XmiI	GTMKAC	3 cut(s)	120, 780, 2780
XmnI	GAANNNNTTC	3 cut(s)	1668, 1791, 3042
XspI	CTAG	8 cut(s)	210, 494, 566, 608, 1673, 2262, 2267, 2889
Zsp2I	ATGCAT	2 cut(s)	1369, 3084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.