Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

3783895 .. 3788914

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1048700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGAGTCCTATCAGCTGGAGACGTTTTATCTCTTTCTGCTTTCTCTTGTCATGGTTTTTCTATATGGCCGTGACTACAGCCGGAGACACAAGGATCCCGGTGAATGTGGGAGTTGTTGTCGACCTTGATACGCCGAGCGGGAAGGTTTATTTGAGTTGCATCAAAATGGCTCTGGAGGACTTCTATGCATCTCATGCTCACTACAGGACCAAGCTCGTCTTGAATACTAGGAACTCCAAGGAAAATATTGTTGGTGCAGCTGCTGCAGCTCTGGATCTGATTAAAAATGTAGAAGTGCAAGCAATCCTAGGGCCAGAAACATCAATGCAGGCGAGCTTCGTTGTTAATCTTGGAGACCAAGCTCATGTCCCAATTTTATCATTTTCTGCAACAAGCCCTTCTCTCGCATCACTCCGTAGCTCTTACTTCTTCCAGATTACACAAACCGACTCATACCAAGTGAAAGCCATAAGAGACCTTGTCAAATGTTTTGGATGGAGACAAGTTGTGCCAATTTATGTAGACGATACGTACGGGGAGGGAGTTATACCCTCTTTAATTGATGCACTACAAGAGGTGGATGCTCATGTTCCCTATCGTAGTGTGATTCCTCCATCAGCCACTGATGATGAAATTGGTGAAGAGCTTTACAAGTTAATAACTATGCAAACGAGAGTCTTCATTGTGCACATGATGCCTAATCTCTCGTCTAGTCTATTTTCCAAGGCAAAAGAGATTGGAATGATGAGTGAAGGCTACGTTTGGATCATAACGAATGGAGTAGGAAATCGTTTATGGTCAATGCGTCCTATCCAACAAAATGCAATGCAAGGAGTATTAGGTGTGGAAACAGAAGTTCCAAAAACAGTGGAGCTTAACAAATTCCAAATGCGGTGGAGAAGGCAATTCCAGCAAGACAATCCCACCATGAATGTGATTGACGTTGATTGTGACGCTTTTTCACTTCGGGCTTATGATGCAGCATTTGCACTAGCCTTGGCCATTGAAGAAGTTGGGATGAATACAAGTTTTGGTTTCCAAAAGATGAATGATTCCTTCAACTCAAACGATCTTGATACGTTCAAGGTCTCTCAATATGGTCCAAAACTTGCCAAAGCCTTATCAACTACTAGATTCAAGGGCATAGCTGGAGACTTTAGTCTTGTTGATGGGCAACTTCAATCATCAACTTTTAAGATAGTCAATGTAAATGGTAATGGGGTAAGAACAATTGCATTTTGGACACCAGAAAATGGAATGGTGAAAACATTGAATTCAACAAACAAAAGTACACTTTCAATTTCGAAGAAGTGCAATTTTGGACCGATTATATGGCCAGGAGATTCTCTATCTGTTCCAAGGGGATGGGAGATCCCAACAAAAGGCAAGAAGTTGAGAATTGGAGTTCCTGTGAAGGTTGGTTATACTGAGTTTGTTAAGGTAACTAAGAATCTTGACACTAACACAACGGAAGTCACCGGGTTCAGTATTGATGTCTTTGATGCTGTATTGAGTGTATTGCCATTTGCTCTTCCTTATGAATTCATTCCCTTTGAAAATCCTGATGGCACCAGCGCTGGCACATACAACGATTTGGTCTATCAAGTACATCTCGAGAAATTTGATGCTGTGGTGGGAGATACAACAATTCGAGCGAATAGATCCTTGTATGTGGACTTCACAATGCCATACACAGAATCTGGTGTAGTGATGGTTGTGCCAATCAGAGATATGAGGATTAAAAACGCATGGGTTTTCTTGAAGCCTTTGACATGGGACCTATGGCTAACAATTCTTTGTTTCTTCATCTTTATTGGTTTTGTCATTTGGGTGCTTGAACATCGAATTAATGAAGATTTTCGTGGCCCTCCCTCGCATCAAATTGGCACAAGCTTCTGGTTCTCCTTCTCCACCATGGTTTTTTCACATAGGGAGAAAGTCGTTAGCAACTTGGCCAGATTCTTGATGATTATATGGGTATTTGTGGTGCTAGTACTCACACAAAGTTACACAGCTAATTTAGCATCATTATTAACAGTCCAACAGCTCCAACCAACGGTCACTGGGGTAAAGGATCTTGTAAAAAGTGGGGTTCCTGTTGGTTACATGCAAGGTTCTTTTGTTTACGAACTCCTGAAAGACATCGGTTTCGAAGAGTCAAAGCTTAAGGCTGTTAATTCCATGGAAGAATCTGATGAAGCACTTTCCAAAGGGAGTGGAAAGGGTGGCATTGCTGCTGTTATTGATGAAACCCCCAACATGAAGCTTTTTGTTGCAAAGTATTGTTCCAAATATACGATGATTGGTCCAATCTTCAAGACTGATGGCTTTGGCTTTGTGTTTCCAAAGCGTTCTCCTCTGTTATGTGACGTTTCACAGGCGGTCCTAAATGTGACCGAAGGAGAGAAAATTATGAAAATTGAAAACAGATGGTTCAGTCAAGGAAGCCATTGTGAAGATAATCCAACGGTCTCAAACAACAGTCTTGGGCTTGAAAGCTTTTGGGGTCTATTCCTCATCGCCGGGGTGGCTTCCATTCTTGCTCTCGTCATATTTGCAGTTTCATTTCTTCACAATAATTGTCATATCTTAAATCATGCTGAATATTCAAGAGCTTCGAAATGGAGAAGGGTTCGAGCCATGTTTGAAATTTTCGATGACAAAGATCTCAGCTCCCATAATTTTAAAAGCAGTCAAGAAAGAGATGGAAGTGCTGGTGTTCAAGATGAAGTTAAGGCCTCACCTAATAGCAACTGGCCTGGAAGTCCATTCAGCTACTTCAACCAAATAGATAAGGATTTCAGATTCTACGAAGGGCAACAATCTCCATCTACTTCTACTAGTCATGCATCTATGGAGACAACTCCTGATAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

960

Amino Acids

107.24

Weight (kDa)

6.08

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	33 - 394	4.4e-20	Periplasmic binding protein
ANF_receptor	PF01094	53 - 406	1.5e-81	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	480 - 573	3.2e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	488 - 813	1e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	591 - 844	4.7e-42	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1568
AccB7I	CCANNNNNTGG	1 cut(s)	1253
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	2 cut(s)	120, 522
AciI	CCGC	3 cut(s)	138, 892, 2381
AclWI	GGATC	7 cut(s)	88, 101, 282, 773, 1366, 1656, 2082
AcoI	YGGCCR	4 cut(s)	66, 999, 1334, 1953
AcsI	RAATTY	5 cut(s)	881, 1273, 1541, 1619, 2649
AfaI	GTAC	4 cut(s)	533, 1291, 1608, 1995
AfeI	AGCGCT	1 cut(s)	1576
AfiI	CCNNNNNNNGG	3 cut(s)	1253, 1382, 2056
AflII	CTTAAG	1 cut(s)	2165
AhlI	ACTAGT	1 cut(s)	2840
AjnI	CCWGG	2 cut(s)	1336, 2758
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	9 cut(s)	13, 78, 348, 468, 493, 1093, 1146, 2476, 2852
Alw44I	GTGCAC	1 cut(s)	686
AlwI	GGATC	7 cut(s)	88, 101, 282, 773, 1366, 1656, 2082
AlwNI	CAGNNNCTG	3 cut(s)	263, 623, 1700
Ama87I	CYCGRG	1 cut(s)	1613
Aor51HI	AGCGCT	1 cut(s)	1576
AoxI	GGCC	8 cut(s)	66, 311, 999, 1334, 1864, 1953, 2736, 2756
ApaLI	GTGCAC	1 cut(s)	686
ApeKI	GCWGC	6 cut(s)	257, 260, 263, 266, 980, 2234
ApoI	RAATTY	5 cut(s)	881, 1273, 1541, 1619, 2649
ArsI	GACNNNNNNTTYG	2 cut(s)	2132, 2164
AseI	ATTAAT	1 cut(s)	1848
Asp700I	GAANNNNTTC	2 cut(s)	1545, 1857
AspA2I	CCTAGG	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	1577
AspS9I	GGNCC	8 cut(s)	207, 311, 1100, 1322, 1777, 1865, 2306, 2383
AsuC2I	CCSGG	3 cut(s)	98, 1480, 2524
AsuHPI	GGTGA	5 cut(s)	112, 650, 1273, 1468, 2733
AsuII	TTCGAA	3 cut(s)	1304, 2151, 2618
AvaI	CYCGRG	1 cut(s)	1613
AvaII	GGWCC	6 cut(s)	207, 1100, 1322, 1777, 2306, 2383
AvrII	CCTAGG	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	690
BalI	TGGCCA	3 cut(s)	1001, 1336, 1955
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	1568
BarI	GAAGNNNNNNTAC	2 cut(s)	1661, 1693
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	6 cut(s)	247, 250, 269, 278, 992, 2221
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	1338, 2760
BcnI	CCSGG	3 cut(s)	98, 1480, 2524
BcoDI	GTCTC	9 cut(s)	13, 78, 348, 468, 493, 1093, 1146, 2476, 2852
BcuI	ACTAGT	1 cut(s)	2840
BfaI	CTAG	7 cut(s)	228, 308, 711, 992, 1131, 1991, 2841
BfmI	CTRYAG	3 cut(s)	75, 202, 264
BfoI	RGCGCY	1 cut(s)	1578
BfrI	CTTAAG	1 cut(s)	2165
BglI	GCCNNNNNGGC	1 cut(s)	2528
BglII	AGATCT	1 cut(s)	2665
BisI	GCNGC	6 cut(s)	258, 261, 264, 267, 981, 2235
BlnI	CCTAGG	1 cut(s)	307
BlsI	GCNGC	6 cut(s)	259, 262, 265, 268, 982, 2236
BmcAI	AGTACT	1 cut(s)	1995
Bme1390I	CCNGG	5 cut(s)	98, 1338, 1480, 2524, 2760
Bme18I	GGWCC	6 cut(s)	207, 1100, 1322, 1777, 2306, 2383
BmeT110I	CYCGRG	1 cut(s)	1613
BmgT120I	GGNCC	8 cut(s)	207, 311, 1100, 1322, 1777, 1865, 2306, 2383
BmiI	GGNNCC	4 cut(s)	95, 1570, 1778, 2094
BmrFI	CCNGG	5 cut(s)	98, 1338, 1480, 2524, 2760
BmrI	ACTGGG	1 cut(s)	2073
BmuI	ACTGGG	1 cut(s)	2073
BoxI	GACNNNNGTC	1 cut(s)	1158
BpiI	GAAGAC	1 cut(s)	670
BpmI	CTGGAG	3 cut(s)	37, 194, 1170
Bpu14I	TTCGAA	3 cut(s)	1304, 2151, 2618
BpuMI	CCSGG	3 cut(s)	98, 1480, 2524
BsaAI	YACGTR	1 cut(s)	531
BsaI	GGTCTC	4 cut(s)	348, 468, 1093, 2476
BsaJI	CCNNGG	8 cut(s)	237, 307, 723, 996, 1358, 1914, 2181, 2523
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 1395, 1425
Bsc4I	CCNNNNNNNGG	3 cut(s)	1253, 1382, 2056
Bse1I	ACTGG	2 cut(s)	2068, 2759
Bse3DI	GCAATG	2 cut(s)	831, 2229
BseBI	CCWGG	2 cut(s)	1338, 2760
BseDI	CCNNGG	8 cut(s)	237, 307, 723, 996, 1358, 1914, 2181, 2523
BseGI	GGATG	4 cut(s)	500, 586, 1023, 1370
BseLI	CCNNNNNNNGG	3 cut(s)	1253, 1382, 2056
BseMI	GCAATG	2 cut(s)	831, 2229
BseMII	CTCAG	2 cut(s)	1419, 2683
BseNI	ACTGG	2 cut(s)	2068, 2759
BseRI	GAGGAG	1 cut(s)	2346
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	6 cut(s)	247, 250, 269, 278, 992, 2221
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	8 cut(s)	68, 313, 1001, 1336, 1866, 1955, 2738, 2758
BshNI	GGYRCC	1 cut(s)	1568
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	1613
BsiSI	CCGG	4 cut(s)	81, 98, 1479, 2523
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	353, 1790
BslI	CCNNNNNNNGG	3 cut(s)	1253, 1382, 2056
BsmAI	GTCTC	9 cut(s)	13, 78, 348, 468, 493, 1093, 1146, 2476, 2852
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	353, 1790
BsnI	GGCC	8 cut(s)	68, 313, 1001, 1336, 1866, 1955, 2738, 2758
Bso31I	GGTCTC	4 cut(s)	348, 468, 1093, 2476
BsoBI	CYCGRG	1 cut(s)	1613
Bsp119I	TTCGAA	3 cut(s)	1304, 2151, 2618
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
Bsp19I	CCATGG	2 cut(s)	1914, 2181
BspACI	CCGC	3 cut(s)	138, 892, 2381
BspANI	GGCC	8 cut(s)	68, 313, 1001, 1336, 1866, 1955, 2738, 2758
BspCNI	CTCAG	2 cut(s)	1420, 2682
BspLI	GGNNCC	4 cut(s)	95, 1570, 1778, 2094
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	7 cut(s)	88, 101, 282, 773, 1366, 1656, 2082
BspQI	GCTCTTC	2 cut(s)	636, 1536
BspT104I	TTCGAA	3 cut(s)	1304, 2151, 2618
BspT107I	GGYRCC	1 cut(s)	1568
BspTI	CTTAAG	1 cut(s)	2165
BspTNI	GGTCTC	4 cut(s)	348, 468, 1093, 2476
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	831, 2229
BsrI	ACTGG	2 cut(s)	2068, 2759
BssECI	CCNNGG	8 cut(s)	237, 307, 723, 996, 1358, 1914, 2181, 2523
BssMI	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
BssT1I	CCWWGG	7 cut(s)	237, 307, 723, 996, 1358, 1914, 2181
Bst2UI	CCWGG	2 cut(s)	1338, 2760
Bst4CI	ACNGT	5 cut(s)	868, 2038, 2059, 2470, 2483
Bst6I	CTCTTC	3 cut(s)	636, 1536, 2148
BstAFI	CTTAAG	1 cut(s)	2165
BstAPI	GCANNNNNTGC	4 cut(s)	194, 263, 694, 986
BstBAI	YACGTR	1 cut(s)	531
BstBI	TTCGAA	3 cut(s)	1304, 2151, 2618
BstC8I	GCNNGC	4 cut(s)	300, 330, 334, 1579
BstDEI	CTNAG	3 cut(s)	1428, 1446, 2669
BstDSI	CCRYGG	2 cut(s)	1914, 2181
BstF5I	GGATG	4 cut(s)	500, 586, 1023, 1370
BstH2I	RGCGCY	1 cut(s)	1578
BstHHI	GCGC	1 cut(s)	1577
BstKTI	GATC	8 cut(s)	96, 277, 768, 1072, 1374, 1664, 2077, 2668
BstMAI	GTCTC	9 cut(s)	13, 78, 348, 468, 493, 1093, 1146, 2476, 2852
BstMBI	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
BstMWI	GCNNNNNNNGC	9 cut(s)	194, 263, 266, 694, 910, 977, 986, 2021, 2528
BstNI	CCWGG	2 cut(s)	1338, 2760
BstNSI	RCATGY	1 cut(s)	2110
BstPAI	GACNNNNGTC	1 cut(s)	1158
BstSCI	CCNGG	5 cut(s)	96, 1336, 1478, 2522, 2758
BstSFI	CTRYAG	3 cut(s)	75, 202, 264
BstSLI	GKGCMC	1 cut(s)	690
BstSNI	TACGTA	1 cut(s)	531
BstV1I	GCAGC	6 cut(s)	247, 250, 269, 278, 992, 2221
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	6 cut(s)	93, 274, 1371, 1661, 2074, 2665
BstXI	CCANNNNNNTGG	1 cut(s)	1365
BstYI	RGATCY	6 cut(s)	93, 274, 1371, 1661, 2074, 2665
BsuRI	GGCC	8 cut(s)	68, 313, 1001, 1336, 1866, 1955, 2738, 2758
BtgI	CCRYGG	2 cut(s)	1914, 2181
BtgZI	GCGATG	1 cut(s)	2503
BtsCI	GGATG	4 cut(s)	500, 586, 1023, 1370
BtsIMutI	CAGTG	3 cut(s)	621, 873, 2061
Cac8I	GCNNGC	4 cut(s)	300, 330, 334, 1579
CaiI	CAGNNNCTG	3 cut(s)	263, 623, 1700
CfoI	GCGC	1 cut(s)	1577
Cfr13I	GGNCC	8 cut(s)	207, 311, 1100, 1322, 1777, 1865, 2306, 2383
CseI	GACGC	2 cut(s)	794, 962
Csp6I	GTAC	4 cut(s)	532, 1290, 1607, 1994
CspCI	CAANNNNNGTGG	6 cut(s)	849, 875, 884, 910, 2197, 2232
CviQI	GTAC	4 cut(s)	532, 1290, 1607, 1994
DdeI	CTNAG	3 cut(s)	1428, 1446, 2669
DpnI	GATC	8 cut(s)	95, 276, 767, 1071, 1373, 1663, 2076, 2667
DpnII	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
DraI	TTTAAA	1 cut(s)	2686
EaeI	YGGCCR	4 cut(s)	66, 999, 1334, 1953
Eam1104I	CTCTTC	3 cut(s)	636, 1536, 2148
EarI	CTCTTC	3 cut(s)	636, 1536, 2148
Eco105I	TACGTA	1 cut(s)	531
Eco130I	CCWWGG	7 cut(s)	237, 307, 723, 996, 1358, 1914, 2181
Eco147I	AGGCCT	1 cut(s)	2738
Eco31I	GGTCTC	4 cut(s)	348, 468, 1093, 2476
Eco47I	GGWCC	6 cut(s)	207, 1100, 1322, 1777, 2306, 2383
Eco47III	AGCGCT	1 cut(s)	1576
Eco88I	CYCGRG	1 cut(s)	1613
EcoO109I	RGGNCCY	1 cut(s)	1777
EcoRI	GAATTC	2 cut(s)	1273, 1541
EcoRII	CCWGG	2 cut(s)	1336, 2758
EcoT14I	CCWWGG	7 cut(s)	237, 307, 723, 996, 1358, 1914, 2181
EcoT22I	ATGCAT	2 cut(s)	190, 2851
ErhI	CCWWGG	7 cut(s)	237, 307, 723, 996, 1358, 1914, 2181
Esp3I	CGTCTC	1 cut(s)	13
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	2 cut(s)	353, 1790
FauI	CCCGC	1 cut(s)	131
FblI	GTMKAC	2 cut(s)	120, 522
Fnu4HI	GCNGC	6 cut(s)	258, 261, 264, 267, 981, 2235
FokI	GGATG	4 cut(s)	507, 593, 1030, 1377
Fsp4HI	GCNGC	6 cut(s)	258, 261, 264, 267, 981, 2235
FspBI	CTAG	7 cut(s)	228, 308, 711, 992, 1131, 1991, 2841
GlaI	GCGC	1 cut(s)	1576
GluI	GCNGC	6 cut(s)	258, 261, 264, 267, 981, 2235
GsuI	CTGGAG	3 cut(s)	37, 194, 1170
HaeII	RGCGCY	1 cut(s)	1578
HaeIII	GGCC	8 cut(s)	68, 313, 1001, 1336, 1866, 1955, 2738, 2758
HapII	CCGG	4 cut(s)	81, 98, 1479, 2523
HgaI	GACGC	2 cut(s)	794, 962
HhaI	GCGC	1 cut(s)	1577
Hin6I	GCGC	1 cut(s)	1575
HinP1I	GCGC	1 cut(s)	1575
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	4 cut(s)	1891, 2162, 2264, 2497
HpaII	CCGG	4 cut(s)	81, 98, 1479, 2523
HphI	GGTGA	5 cut(s)	112, 650, 1273, 1468, 2733
Hpy166II	GTNNAC	6 cut(s)	121, 523, 688, 1292, 1675, 2125
Hpy188I	TCNGA	4 cut(s)	279, 1727, 2194, 2804
Hpy8I	GTNNAC	6 cut(s)	121, 523, 688, 1292, 1675, 2125
HpyCH4III	ACNGT	5 cut(s)	868, 2038, 2059, 2470, 2483
HpyCH4IV	ACGT	6 cut(s)	22, 530, 759, 942, 1079, 2370
HpyF10VI	GCNNNNNNNGC	9 cut(s)	194, 263, 266, 694, 910, 977, 986, 2021, 2528
HpyF3I	CTNAG	3 cut(s)	1428, 1446, 2669
HpySE526I	ACGT	6 cut(s)	22, 530, 759, 942, 1079, 2370
HspAI	GCGC	1 cut(s)	1575
Kzo9I	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
LguI	GCTCTTC	2 cut(s)	636, 1536
LmnI	GCTCC	3 cut(s)	871, 2052, 2678
Lsp1109I	GCAGC	6 cut(s)	247, 250, 269, 278, 992, 2221
MaeI	CTAG	7 cut(s)	228, 308, 711, 992, 1131, 1991, 2841
MaeII	ACGT	6 cut(s)	22, 530, 759, 942, 1079, 2370
MaeIII	GTNAC	9 cut(s)	70, 950, 1441, 1474, 2006, 2059, 2102, 2366, 2392
MalI	GATC	8 cut(s)	95, 276, 767, 1071, 1373, 1663, 2076, 2667
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
MfeI	CAATTG	1 cut(s)	1230
MflI	RGATCY	6 cut(s)	93, 274, 1371, 1661, 2074, 2665
MhlI	GDGCHC	1 cut(s)	690
MlsI	TGGCCA	3 cut(s)	1001, 1336, 1955
MluNI	TGGCCA	3 cut(s)	1001, 1336, 1955
MlyI	GAGTC	4 cut(s)	13, 443, 684, 2165
MmeI	TCCRAC	4 cut(s)	838, 2065, 2074, 2489
Mox20I	TGGCCA	3 cut(s)	1001, 1336, 1955
Mph1103I	ATGCAT	2 cut(s)	190, 2851
MroXI	GAANNNNTTC	2 cut(s)	1545, 1857
MscI	TGGCCA	3 cut(s)	1001, 1336, 1955
MslI	CAYNNNNRTG	3 cut(s)	164, 932, 1829
Msp20I	TGGCCA	3 cut(s)	1001, 1336, 1955
MspA1I	CMGCKG	2 cut(s)	15, 260
MspCI	CTTAAG	1 cut(s)	2165
MspI	CCGG	4 cut(s)	81, 98, 1479, 2523
MspR9I	CCNGG	5 cut(s)	98, 1338, 1480, 2524, 2760
MunI	CAATTG	1 cut(s)	1230
MvaI	CCWGG	2 cut(s)	1338, 2760
MwoI	GCNNNNNNNGC	9 cut(s)	194, 263, 266, 694, 910, 977, 986, 2021, 2528
NciI	CCSGG	3 cut(s)	98, 1480, 2524
NcoI	CCATGG	2 cut(s)	1914, 2181
NdeII	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
NlaIV	GGNNCC	4 cut(s)	95, 1570, 1778, 2094
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	6 cut(s)	70, 950, 1474, 2059, 2366, 2392
NsiI	ATGCAT	2 cut(s)	190, 2851
NspI	RCATGY	1 cut(s)	2110
NspV	TTCGAA	3 cut(s)	1304, 2151, 2618
PaeR7I	CTCGAG	1 cut(s)	1613
PceI	AGGCCT	1 cut(s)	2738
PciSI	GCTCTTC	2 cut(s)	636, 1536
PdmI	GAANNNNTTC	2 cut(s)	1545, 1857
PfeI	GAWTC	9 cut(s)	607, 1052, 1134, 1343, 1450, 1697, 1959, 2189, 2805
Pfl23II	CGTACG	1 cut(s)	531
PflFI	GACNNNGTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	1253
PkrI	GCNGC	6 cut(s)	259, 262, 265, 268, 982, 2236
PleI	GAGTC	4 cut(s)	12, 443, 683, 2164
PpsI	GAGTC	4 cut(s)	12, 443, 683, 2164
Ppu21I	YACGTR	1 cut(s)	531
PpuMI	RGGWCCY	1 cut(s)	1777
PshAI	GACNNNNGTC	1 cut(s)	1158
PshBI	ATTAAT	1 cut(s)	1848
Psp5II	RGGWCCY	1 cut(s)	1777
Psp6I	CCWGG	2 cut(s)	1336, 2758
PspGI	CCWGG	2 cut(s)	1336, 2758
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	4 cut(s)	95, 1570, 1778, 2094
PspPI	GGNCC	8 cut(s)	207, 311, 1100, 1322, 1777, 1865, 2306, 2383
PspPPI	RGGWCCY	1 cut(s)	1777
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	3 cut(s)	263, 623, 1700
PsuI	RGATCY	6 cut(s)	93, 274, 1371, 1661, 2074, 2665
PsyI	GACNNNGTC	1 cut(s)	479
PvuII	CAGCTG	2 cut(s)	15, 260
RsaI	GTAC	4 cut(s)	533, 1291, 1608, 1995
RsaNI	GTAC	4 cut(s)	532, 1290, 1607, 1994
RseI	CAYNNNNRTG	3 cut(s)	164, 932, 1829
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	2 cut(s)	636, 1536
SatI	GCNGC	6 cut(s)	258, 261, 264, 267, 981, 2235
Sau3AI	GATC	8 cut(s)	93, 274, 765, 1069, 1371, 1661, 2074, 2665
Sau96I	GGNCC	8 cut(s)	207, 311, 1100, 1322, 1777, 1865, 2306, 2383
ScaI	AGTACT	1 cut(s)	1995
SchI	GAGTC	4 cut(s)	13, 443, 684, 2165
ScrFI	CCNGG	5 cut(s)	98, 1338, 1480, 2524, 2760
SduI	GDGCHC	1 cut(s)	690
SfcI	CTRYAG	3 cut(s)	75, 202, 264
Sfr274I	CTCGAG	1 cut(s)	1613
SfuI	TTCGAA	3 cut(s)	1304, 2151, 2618
SinI	GGWCC	6 cut(s)	207, 1100, 1322, 1777, 2306, 2383
SlaI	CTCGAG	1 cut(s)	1613
SmiMI	CAYNNNNRTG	3 cut(s)	164, 932, 1829
SmlI	CTYRAG	2 cut(s)	1613, 2165
SmoI	CTYRAG	2 cut(s)	1613, 2165
SnaBI	TACGTA	1 cut(s)	531
SpeI	ACTAGT	1 cut(s)	2840
SseBI	AGGCCT	1 cut(s)	2738
SsiI	CCGC	3 cut(s)	138, 892, 2381
SspI	AATATT	2 cut(s)	247, 2606
SspMI	CTAG	7 cut(s)	228, 308, 711, 992, 1131, 1991, 2841
StuI	AGGCCT	1 cut(s)	2738
StyD4I	CCNGG	5 cut(s)	96, 1336, 1478, 2522, 2758
StyI	CCWWGG	7 cut(s)	237, 307, 723, 996, 1358, 1914, 2181
TaaI	ACNGT	5 cut(s)	868, 2038, 2059, 2470, 2483
TaiI	ACGT	6 cut(s)	25, 533, 762, 945, 1082, 2373
TaqI	TCGA	9 cut(s)	120, 1304, 1614, 1651, 1843, 2151, 2618, 2635, 2655
TaqII	GACCGA	2 cut(s)	1339, 2411
TatI	WGTACW	3 cut(s)	1289, 1606, 1993
TfiI	GAWTC	9 cut(s)	607, 1052, 1134, 1343, 1450, 1697, 1959, 2189, 2805
TscAI	CASTG	3 cut(s)	628, 873, 2068
TseFI	GTSAC	6 cut(s)	70, 950, 1474, 2059, 2366, 2392
TseI	GCWGC	6 cut(s)	257, 260, 263, 266, 980, 2234
Tsp45I	GTSAC	6 cut(s)	70, 950, 1474, 2059, 2366, 2392
TspGWI	ACGGA	2 cut(s)	404, 1484
TspRI	CASTG	3 cut(s)	628, 873, 2068
Tth111I	GACNNNGTC	1 cut(s)	479
Van91I	CCANNNNNTGG	1 cut(s)	1253
Vha464I	CTTAAG	1 cut(s)	2165
VneI	GTGCAC	1 cut(s)	686
VpaK11BI	GGWCC	6 cut(s)	207, 1100, 1322, 1777, 2306, 2383
VspI	ATTAAT	1 cut(s)	1848
XapI	RAATTY	5 cut(s)	881, 1273, 1541, 1619, 2649
XceI	RCATGY	1 cut(s)	2110
XhoI	CTCGAG	1 cut(s)	1613
XmaJI	CCTAGG	1 cut(s)	307
XmiI	GTMKAC	2 cut(s)	120, 522
XmnI	GAANNNNTTC	2 cut(s)	1545, 1857
XspI	CTAG	7 cut(s)	228, 308, 711, 992, 1131, 1991, 2841
ZrmI	AGTACT	1 cut(s)	1995
Zsp2I	ATGCAT	2 cut(s)	190, 2851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.