Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

29257975 .. 29261637

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGGCACAAAACCAAACCATCCCGGTGAATGTAGGAGTTATTCTTCATGACCTTAATTCACAGGTGGGGAAGATTTTGTTGAGCTGCATTAATATGGCTCTTTCAGACTTCTATGCTTCTCATACTTACTATAACACTAGATTGGTTTTGAACACTAGAGAATCCAAACGAAATGTTGTCAGTGCAGCTTCTGCAGCTCTAGATCTGATAGAGAATGCACATGTGCAAGCAATCCTAGGACCAGTGACATCAATGGAAGAGAGCTTTGTTATAAATCTTGGGGAGCAAGCTGAGGTGCCCATTATATCATTCTCTGCAACAAGCCCTTCTCTTACTTCACTGCGAAGCTCCTACTTTTTTCAGTTTGCACAAAATGACTCGGCCCAAGTAAAAGCAGTAAGTGCAGTTGTAAAAGGTTTTGGATGGAGGCAAGTGGTGCTCATATACGTAGACAATGAGTTTGGGGAAGGAGTCGTACCATATTTAACTGATGCATTGGAGGAGGTTGATGCCCGTGTACCATACCGGAGTATCATTTCCCTATCAGCCACAGATAGCCAAATAGTCGAAGAGCTTTACAAGCTAATGACGATGCAAACAAGGGTCTTCATCGTCCACATGACAACTGATTTGTCATCCAGGCTATTTGCCAAGGCAAAAGAGATTGGAATGATGAGTGAAGGGTATGTTTGGCTCACAACTAACAGCATACCTAATAGTTTGAAGTTTCTGAATTCTTCAGCCATAAATTCCATGCAAGGAGTATTAGGTGTGCAAACTTACATTCCAGCAACTGTGGAGTTTGAAGAATTCAAGCTCCGGTGGAAACAACAATACCGCAAAGACAATCCAACCATCATTGGTGCTGAGTTGAATATTTTTGCATTGTGGGCTTACGATGCTGCCTTTGCATTGGCCATGGCAATTGAAGAAGTTAGGACTACAAGCTTTGGTTTCCAAAGGAGAAATGCTTCCATCAACTCATCAACAGATCTTGAAAGTTTTGAGGTCTCTCAATTTGGTCCAACACTTTGCCAAGTACTGTCACTTACTAGATTTGAAGGCATAGCTGGAAATTTCAGCCTAGTTGATGGGCAGCGTCAAACATCAATTTTTCAGATAGTTAATATAAATGGTCGTGGAGCTAGAACAGTTGGATTTTGGACCTTGAAAAATGGAATCATGAGAAAATTGGGTTCACCATCATCAGTAAAGTCGAGCATAAGTTCAACTTCTAAAGGCGATCTTGGACCAATTATATGGCCCGGGGATTCAATCTCTGTTCCCAAAGGATGGGTAAACCCAGCAAACGGCAAGAAGTTGAGAATAGGAGTTCCCGTAGAGGAAGGTTTCACTGAGTTCGTTTCTGTGACAAAAGATCCAAGCACTAACACAACATATGTCACAGGGTTCAGTATTGACGTCTTTAAGGCTGCAGTGGACATATTACCTTATGCTCTTTCTTACGAGTTGATTCCCTTTGCAAATCCTGATGGCACAATGGCTGGCACTTACAATGATTTGTTAACTAATATTGTGTTTCTCATTTATATGTATATATATTATATATGGAAATTAAAACATATAATACAAGTAGTTAGCAACTTGGCTAGATTTGTGATGATTATATGGGTATTTGTTTTGCTAATATTGACACAAAGTTACACGGCTAATCTTGCGTCACTATTAACAGTCCAAAAACTTTACCCTGTTGTTACTGATCTAAAGCATTACTTAAGGAATGGGGATACTGTTGGCTACCAAAACAATACATATATTTATGATATCTTAAGAGAAATAGGCTTTGATGAGTCCAAGCTTAAGGCATATAAATCTGTTGAAGAATGTGATGCTCTTCTTTCGAAAGGCAGTGAAAATGGTGGTATTGCAGCTGCTATTGATGAAACTCCCAACATGAAGCTTTTTCTTGCAAAATATTGTTCCAAATATACTATGGTTGGACCAATTTTTAAAACTGATGGCTTTGCCTTTGTCTTTCCAAAAGGTTCTCCTCTTCTTCATGATGTTTCGCAAGCAATCCTAAACGTGACCGAAGGGGATGTTATACTGAACATTGAAAACAAATGGTTCAATAAAGAAGGCAGTTGTCAAGATAACTCCAACCCAGGGGTTTCTAGCAACAGGCTTGGCCTTGAAACCTTTTGGGGCCTATTCCTCATCGCCGGGGTGGCTTCAGTACTCGCCCTCATCATATTTCTAGCTTCCTTCCTTTACGAGCATAGGCACGTTTTGATTCACACTGATCCAGGAGCCTCTACACGAGGAAAATTTCGAACTATGTTAGAAATTTTTAATGAAAAAGATTTTAGTTCTCATACATTTAAAACCACTCAACGAGATAGAGTCGCTAATGTGGGAGATGCAGTTAATGCCATACTAAACAACTGCTTGGAAATTCCATTGGGAGACAGTTCAGACAGCGCAGATCCAAGTTCACAGTTCATTGGAGAGCAACAAAGTAGTACTACGACACCATCTACTGGTCAAGAGCCTGCAGAGGTGAATCCAGCTAATGAGGTTGATATAACAAATGATGGGGAAATGGAAGGCACTCCTGAACGAGTTCAACATTTCTCCGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

869

Amino Acids

95.91

Weight (kDa)

5.21

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	20 - 314	1.4e-21	Periplasmic binding protein
ANF_receptor	PF01094	28 - 379	5.1e-80	Receptor family ligand binding region
Lig_chan	PF00060	528 - 731	3.7e-20	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AatII	GACGTC	1 cut(s)	1425
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	2 cut(s)	1293, 2501
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	1 cut(s)	838
AclWI	GGATC	3 cut(s)	1373, 2258, 2441
AcoI	YGGCCR	1 cut(s)	915
AcsI	RAATTY	7 cut(s)	733, 748, 809, 1075, 2288, 2307, 2415
AcuI	CTGAAG	2 cut(s)	723, 2178
AcyI	GRCGYC	1 cut(s)	1422
AfaI	GTAC	5 cut(s)	477, 519, 1041, 2199, 2485
AfiI	CCNNNNNNNGG	4 cut(s)	1293, 1310, 2127, 2501
AflII	CTTAAG	3 cut(s)	1735, 1789, 1820
AflIII	ACRYGT	1 cut(s)	220
AjnI	CCWGG	3 cut(s)	638, 2125, 2266
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	1015, 2421
AlwI	GGATC	3 cut(s)	1373, 2258, 2441
AlwNI	CAGNNNCTG	2 cut(s)	191, 794
Ama87I	CYCGRG	1 cut(s)	1265
AoxI	GGCC	5 cut(s)	381, 915, 1262, 2149, 2167
ApeKI	GCWGC	8 cut(s)	84, 185, 194, 902, 1096, 1433, 1889, 1892
ApoI	RAATTY	7 cut(s)	733, 748, 809, 1075, 2288, 2307, 2415
ArsI	GACNNNNNNTTYG	4 cut(s)	443, 475, 613, 645
AseI	ATTAAT	1 cut(s)	90
Asp700I	GAANNNNTTC	2 cut(s)	970, 2583
AspA2I	CCTAGG	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	2444
AspS9I	GGNCC	8 cut(s)	239, 382, 1022, 1164, 1250, 1263, 1961, 2167
AsuC2I	CCSGG	4 cut(s)	23, 1266, 1267, 2185
AsuHPI	GGTGA	3 cut(s)	37, 1191, 2533
AsuII	TTCGAA	2 cut(s)	1862, 2293
AvaI	CYCGRG	1 cut(s)	1265
AvaII	GGWCC	5 cut(s)	239, 1022, 1164, 1250, 1961
AvrII	CCTAGG	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	300
BaeI	ACNNNNGTAYC	2 cut(s)	514, 547
BalI	TGGCCA	1 cut(s)	917
BanI	GGYRCC	1 cut(s)	295
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BauI	CACGAG	1 cut(s)	2280
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	8 cut(s)	71, 197, 206, 889, 1108, 1420, 1879, 1901
BceAI	ACGGC	2 cut(s)	1327, 1683
BciT130I	CCWGG	3 cut(s)	640, 2127, 2268
BciVI	GTATCC	1 cut(s)	1741
BcnI	CCSGG	4 cut(s)	23, 1266, 1267, 2185
BcoDI	GTCTC	2 cut(s)	1015, 2421
BfmI	CTRYAG	3 cut(s)	192, 1434, 2514
BfrI	CTTAAG	3 cut(s)	1735, 1789, 1820
BfuI	GTATCC	1 cut(s)	1741
BglI	GCCNNNNNGGC	1 cut(s)	2189
BglII	AGATCT	2 cut(s)	202, 991
BisI	GCNGC	8 cut(s)	85, 186, 195, 903, 1097, 1434, 1890, 1893
BlnI	CCTAGG	1 cut(s)	235
BlsI	GCNGC	8 cut(s)	86, 187, 196, 904, 1098, 1435, 1891, 1894
BmcAI	AGTACT	3 cut(s)	1041, 2199, 2485
Bme1390I	CCNGG	7 cut(s)	23, 640, 1266, 1267, 2127, 2185, 2268
Bme18I	GGWCC	5 cut(s)	239, 1022, 1164, 1250, 1961
BmeT110I	CYCGRG	1 cut(s)	1265
BmgT120I	GGNCC	8 cut(s)	239, 382, 1022, 1164, 1250, 1263, 1961, 2167
BmiI	GGNNCC	3 cut(s)	297, 2168, 2272
BmrFI	CCNGG	7 cut(s)	23, 640, 1266, 1267, 2127, 2185, 2268
BmsI	GCATC	6 cut(s)	481, 499, 582, 889, 1840, 2371
BpiI	GAAGAC	1 cut(s)	598
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	2 cut(s)	1862, 2293
BpuMI	CCSGG	4 cut(s)	23, 1266, 1267, 2185
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	1422
BsaI	GGTCTC	1 cut(s)	1015
BsaJI	CCNNGG	8 cut(s)	235, 651, 918, 1265, 1266, 2125, 2126, 2184
BsaWI	WCCGGW	2 cut(s)	525, 819
BsaXI	ACNNNNNCTCC	4 cut(s)	1323, 1353, 2370, 2400
Bsc4I	CCNNNNNNNGG	4 cut(s)	1293, 1310, 2127, 2501
Bse1I	ACTGG	2 cut(s)	242, 2506
BseBI	CCWGG	3 cut(s)	640, 2127, 2268
BseDI	CCNNGG	8 cut(s)	235, 651, 918, 1265, 1266, 2125, 2126, 2184
BseGI	GGATG	5 cut(s)	18, 428, 635, 1298, 2065
BseLI	CCNNNNNNNGG	4 cut(s)	1293, 1310, 2127, 2501
BseMII	CTCAG	3 cut(s)	282, 858, 1347
BseNI	ACTGG	2 cut(s)	242, 2506
BseRI	GAGGAG	2 cut(s)	515, 2001
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	8 cut(s)	71, 197, 206, 889, 1108, 1420, 1879, 1901
BseYI	CCCAGC	1 cut(s)	1303
BsgI	GTGCAG	2 cut(s)	204, 423
BshFI	GGCC	5 cut(s)	383, 917, 1264, 2151, 2169
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	1265
BsiSI	CCGG	5 cut(s)	23, 526, 820, 1266, 2184
BslI	CCNNNNNNNGG	4 cut(s)	1293, 1310, 2127, 2501
BsmAI	GTCTC	2 cut(s)	1015, 2421
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	5 cut(s)	383, 917, 1264, 2151, 2169
Bso31I	GGTCTC	1 cut(s)	1015
BsoBI	CYCGRG	1 cut(s)	1265
Bsp119I	TTCGAA	2 cut(s)	1862, 2293
Bsp1286I	GDGCHC	2 cut(s)	300, 441
Bsp143I	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
Bsp19I	CCATGG	1 cut(s)	918
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	5 cut(s)	383, 917, 1264, 2151, 2169
BspCNI	CTCAG	3 cut(s)	283, 859, 1348
BspHI	TCATGA	3 cut(s)	46, 1182, 2020
BspLI	GGNNCC	3 cut(s)	297, 2168, 2272
BspMAI	CTGCAG	3 cut(s)	196, 1438, 2518
BspPI	GGATC	3 cut(s)	1373, 2258, 2441
BspQI	GCTCTTC	2 cut(s)	564, 1860
BspT104I	TTCGAA	2 cut(s)	1862, 2293
BspT107I	GGYRCC	1 cut(s)	295
BspTI	CTTAAG	3 cut(s)	1735, 1789, 1820
BspTNI	GGTCTC	1 cut(s)	1015
BsrI	ACTGG	2 cut(s)	242, 2506
BssECI	CCNNGG	8 cut(s)	235, 651, 918, 1265, 1266, 2125, 2126, 2184
BssMI	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
BssNI	GRCGYC	1 cut(s)	1422
BssSI	CACGAG	1 cut(s)	2280
BssT1I	CCWWGG	3 cut(s)	235, 651, 918
Bst2BI	CACGAG	1 cut(s)	2280
Bst2UI	CCWGG	3 cut(s)	640, 2127, 2268
Bst4CI	ACNGT	7 cut(s)	796, 1044, 1153, 1693, 1753, 2432, 2460
Bst6I	CTCTTC	4 cut(s)	252, 564, 1860, 2019
BstACI	GRCGYC	1 cut(s)	1422
BstAFI	CTTAAG	3 cut(s)	1735, 1789, 1820
BstAPI	GCANNNNNTGC	4 cut(s)	191, 401, 436, 2390
BstBAI	YACGTR	1 cut(s)	448
BstBI	TTCGAA	2 cut(s)	1862, 2293
BstC8I	GCNNGC	5 cut(s)	228, 288, 1507, 2034, 2514
BstDEI	CTNAG	3 cut(s)	291, 867, 1356
BstDSI	CCRYGG	1 cut(s)	918
BstF5I	GGATG	5 cut(s)	18, 428, 635, 1298, 2065
BstHHI	GCGC	1 cut(s)	2444
BstKTI	GATC	7 cut(s)	205, 994, 1246, 1381, 1723, 2266, 2449
BstMAI	GTCTC	2 cut(s)	1015, 2421
BstMBI	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
BstNI	CCWGG	3 cut(s)	640, 2127, 2268
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	7 cut(s)	21, 638, 1264, 1265, 2125, 2183, 2266
BstSFI	CTRYAG	3 cut(s)	192, 1434, 2514
BstSLI	GKGCMC	1 cut(s)	300
BstSNI	TACGTA	1 cut(s)	448
BstV1I	GCAGC	8 cut(s)	71, 197, 206, 889, 1108, 1420, 1879, 1901
BstV2I	GAAGAC	1 cut(s)	598
BstX2I	RGATCY	4 cut(s)	202, 991, 1378, 2446
BstXI	CCANNNNNNTGG	1 cut(s)	1260
BstYI	RGATCY	4 cut(s)	202, 991, 1378, 2446
BsuI	GTATCC	1 cut(s)	1741
BsuRI	GGCC	5 cut(s)	383, 917, 1264, 2151, 2169
BtgI	CCRYGG	1 cut(s)	918
BtgZI	GCGATG	1 cut(s)	2164
BtsCI	GGATG	5 cut(s)	18, 428, 635, 1298, 2065
BtsI	GCAGTG	3 cut(s)	338, 1443, 1876
BtsIMutI	CAGTG	7 cut(s)	187, 249, 338, 1353, 1443, 1876, 2259
Cac8I	GCNNGC	5 cut(s)	228, 288, 1507, 2034, 2514
CaiI	CAGNNNCTG	2 cut(s)	191, 794
CciI	TCATGA	3 cut(s)	46, 1182, 2020
CfoI	GCGC	1 cut(s)	2444
Cfr13I	GGNCC	8 cut(s)	239, 382, 1022, 1164, 1250, 1263, 1961, 2167
Cfr9I	CCCGGG	1 cut(s)	1265
CseI	GACGC	2 cut(s)	1088, 1668
Csp6I	GTAC	5 cut(s)	476, 518, 1040, 2198, 2484
CviAII	CATG	8 cut(s)	47, 221, 619, 754, 919, 1183, 1915, 2021
CviQI	GTAC	5 cut(s)	476, 518, 1040, 2198, 2484
DdeI	CTNAG	3 cut(s)	291, 867, 1356
DpnI	GATC	7 cut(s)	204, 993, 1245, 1380, 1722, 2265, 2448
DpnII	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
DraI	TTTAAA	2 cut(s)	1972, 2344
EaeI	YGGCCR	1 cut(s)	915
Eam1104I	CTCTTC	4 cut(s)	252, 564, 1860, 2019
EarI	CTCTTC	4 cut(s)	252, 564, 1860, 2019
Eco105I	TACGTA	1 cut(s)	448
Eco130I	CCWWGG	3 cut(s)	235, 651, 918
Eco31I	GGTCTC	1 cut(s)	1015
Eco32I	GATATC	1 cut(s)	1786
Eco47I	GGWCC	5 cut(s)	239, 1022, 1164, 1250, 1961
Eco57I	CTGAAG	2 cut(s)	723, 2178
Eco88I	CYCGRG	1 cut(s)	1265
EcoO109I	RGGNCCY	1 cut(s)	2167
EcoRI	GAATTC	2 cut(s)	733, 809
EcoRII	CCWGG	3 cut(s)	638, 2125, 2266
EcoRV	GATATC	1 cut(s)	1786
EcoT14I	CCWWGG	3 cut(s)	235, 651, 918
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	3 cut(s)	235, 651, 918
FaeI	CATG	8 cut(s)	50, 224, 622, 757, 922, 1186, 1918, 2024
FalI	AAGNNNNNCTT	6 cut(s)	1216, 1248, 1230, 1262, 1718, 1750
FatI	CATG	8 cut(s)	46, 220, 618, 753, 918, 1182, 1914, 2020
FauNDI	CATATG	1 cut(s)	1399
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	8 cut(s)	85, 186, 195, 903, 1097, 1434, 1890, 1893
FokI	GGATG	5 cut(s)	5, 435, 622, 1305, 2072
Fsp4HI	GCNGC	8 cut(s)	85, 186, 195, 903, 1097, 1434, 1890, 1893
GlaI	GCGC	1 cut(s)	2443
GluI	GCNGC	8 cut(s)	85, 186, 195, 903, 1097, 1434, 1890, 1893
GsaI	CCCAGC	1 cut(s)	1307
HaeIII	GGCC	5 cut(s)	383, 917, 1264, 2151, 2169
HapII	CCGG	5 cut(s)	23, 526, 820, 1266, 2184
HgaI	GACGC	2 cut(s)	1088, 1668
HhaI	GCGC	1 cut(s)	2444
Hin1I	GRCGYC	1 cut(s)	1422
Hin1II	CATG	8 cut(s)	50, 224, 622, 757, 922, 1186, 1918, 2024
Hin6I	GCGC	1 cut(s)	2442
HinP1I	GCGC	1 cut(s)	2442
HincII	GTYRAC	1 cut(s)	1527
HindII	GTYRAC	1 cut(s)	1527
HindIII	AAGCTT	3 cut(s)	946, 1817, 1919
HpaI	GTTAAC	1 cut(s)	1527
HpaII	CCGG	5 cut(s)	23, 526, 820, 1266, 2184
HphI	GGTGA	3 cut(s)	37, 1191, 2533
Hpy166II	GTNNAC	8 cut(s)	451, 518, 616, 1199, 1300, 1441, 1527, 2456
Hpy188I	TCNGA	6 cut(s)	106, 207, 732, 1119, 2437, 2599
Hpy188III	TCNNGA	9 cut(s)	47, 200, 995, 1183, 1490, 2021, 2111, 2507, 2576
Hpy8I	GTNNAC	8 cut(s)	451, 518, 616, 1199, 1300, 1441, 1527, 2456
HpyAV	CCTTC	9 cut(s)	336, 461, 674, 1055, 1340, 2048, 2093, 2236, 2561
HpyCH4III	ACNGT	7 cut(s)	796, 1044, 1153, 1693, 1753, 2432, 2460
HpyCH4IV	ACGT	4 cut(s)	447, 1422, 2046, 2247
HpyF3I	CTNAG	3 cut(s)	291, 867, 1356
HpySE526I	ACGT	4 cut(s)	447, 1422, 2046, 2247
Hsp92I	GRCGYC	1 cut(s)	1422
Hsp92II	CATG	8 cut(s)	50, 224, 622, 757, 922, 1186, 1918, 2024
HspAI	GCGC	1 cut(s)	2442
KspAI	GTTAAC	1 cut(s)	1527
Kzo9I	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
LguI	GCTCTTC	2 cut(s)	564, 1860
LmnI	GCTCC	5 cut(s)	283, 353, 822, 1142, 2270
Lsp1109I	GCAGC	8 cut(s)	71, 197, 206, 889, 1108, 1420, 1879, 1901
LweI	GCATC	6 cut(s)	481, 499, 582, 889, 1840, 2371
MaeII	ACGT	4 cut(s)	447, 1422, 2046, 2247
MaeIII	GTNAC	8 cut(s)	244, 1044, 1369, 1402, 1661, 1680, 1714, 2047
MalI	GATC	7 cut(s)	204, 993, 1245, 1380, 1722, 2265, 2448
MboI	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
MfeI	CAATTG	1 cut(s)	924
MflI	RGATCY	4 cut(s)	202, 991, 1378, 2446
MhlI	GDGCHC	2 cut(s)	300, 441
MlsI	TGGCCA	1 cut(s)	917
MluNI	TGGCCA	1 cut(s)	917
MlyI	GAGTC	4 cut(s)	371, 480, 1820, 2373
MmeI	TCCRAC	5 cut(s)	875, 1049, 1135, 1939, 2145
Mox20I	TGGCCA	1 cut(s)	917
Mph1103I	ATGCAT	1 cut(s)	496
MroXI	GAANNNNTTC	2 cut(s)	970, 2583
MscI	TGGCCA	1 cut(s)	917
MslI	CAYNNNNRTG	3 cut(s)	23, 92, 1550
Msp20I	TGGCCA	1 cut(s)	917
MspA1I	CMGCKG	1 cut(s)	1892
MspCI	CTTAAG	3 cut(s)	1735, 1789, 1820
MspI	CCGG	5 cut(s)	23, 526, 820, 1266, 2184
MspR9I	CCNGG	7 cut(s)	23, 640, 1266, 1267, 2127, 2185, 2268
MunI	CAATTG	1 cut(s)	924
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	3 cut(s)	640, 2127, 2268
NciI	CCSGG	4 cut(s)	23, 1266, 1267, 2185
NcoI	CCATGG	1 cut(s)	918
NdeI	CATATG	1 cut(s)	1399
NdeII	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
NlaIII	CATG	8 cut(s)	50, 224, 622, 757, 922, 1186, 1918, 2024
NlaIV	GGNNCC	3 cut(s)	297, 2168, 2272
NmeAIII	GCCGAG	1 cut(s)	359
NmuCI	GTSAC	6 cut(s)	244, 1044, 1369, 1402, 1680, 2047
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	224
NspV	TTCGAA	2 cut(s)	1862, 2293
PagI	TCATGA	3 cut(s)	46, 1182, 2020
PasI	CCCWGGG	1 cut(s)	2126
PciI	ACATGT	1 cut(s)	220
PciSI	GCTCTTC	2 cut(s)	564, 1860
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	2 cut(s)	970, 2583
PfeI	GAWTC	6 cut(s)	161, 1179, 1271, 1474, 2254, 2524
PflMI	CCANNNNNTGG	2 cut(s)	1293, 2501
PfoI	TCCNGGA	1 cut(s)	2266
PkrI	GCNGC	8 cut(s)	86, 187, 196, 904, 1098, 1435, 1891, 1894
PleI	GAGTC	4 cut(s)	371, 479, 1819, 2372
PpsI	GAGTC	4 cut(s)	371, 479, 1819, 2372
Ppu21I	YACGTR	1 cut(s)	448
PscI	ACATGT	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	272
Psp6I	CCWGG	3 cut(s)	638, 2125, 2266
PspFI	CCCAGC	1 cut(s)	1303
PspGI	CCWGG	3 cut(s)	638, 2125, 2266
PspN4I	GGNNCC	3 cut(s)	297, 2168, 2272
PspPI	GGNCC	8 cut(s)	239, 382, 1022, 1164, 1250, 1263, 1961, 2167
PstI	CTGCAG	3 cut(s)	196, 1438, 2518
PstNI	CAGNNNCTG	2 cut(s)	191, 794
PsuI	RGATCY	4 cut(s)	202, 991, 1378, 2446
PvuII	CAGCTG	1 cut(s)	1892
RsaI	GTAC	5 cut(s)	477, 519, 1041, 2199, 2485
RsaNI	GTAC	5 cut(s)	476, 518, 1040, 2198, 2484
RseI	CAYNNNNRTG	3 cut(s)	23, 92, 1550
SapI	GCTCTTC	2 cut(s)	564, 1860
SatI	GCNGC	8 cut(s)	85, 186, 195, 903, 1097, 1434, 1890, 1893
Sau3AI	GATC	7 cut(s)	202, 991, 1243, 1378, 1720, 2263, 2446
Sau96I	GGNCC	8 cut(s)	239, 382, 1022, 1164, 1250, 1263, 1961, 2167
ScaI	AGTACT	3 cut(s)	1041, 2199, 2485
SchI	GAGTC	4 cut(s)	371, 480, 1820, 2373
ScrFI	CCNGG	7 cut(s)	23, 640, 1266, 1267, 2127, 2185, 2268
SduI	GDGCHC	2 cut(s)	300, 441
SfaNI	GCATC	6 cut(s)	481, 499, 582, 889, 1840, 2371
SfcI	CTRYAG	3 cut(s)	192, 1434, 2514
SfuI	TTCGAA	2 cut(s)	1862, 2293
SinI	GGWCC	5 cut(s)	239, 1022, 1164, 1250, 1961
SmaI	CCCGGG	1 cut(s)	1267
SmiMI	CAYNNNNRTG	3 cut(s)	23, 92, 1550
SmlI	CTYRAG	3 cut(s)	1735, 1789, 1820
SmoI	CTYRAG	3 cut(s)	1735, 1789, 1820
SnaBI	TACGTA	1 cut(s)	448
SsiI	CCGC	1 cut(s)	838
SspI	AATATT	4 cut(s)	877, 1534, 1650, 1937
StyD4I	CCNGG	7 cut(s)	21, 638, 1264, 1265, 2125, 2183, 2266
StyI	CCWWGG	3 cut(s)	235, 651, 918
TaaI	ACNGT	7 cut(s)	796, 1044, 1153, 1693, 1753, 2432, 2460
TaiI	ACGT	4 cut(s)	450, 1425, 2049, 2250
TaqI	TCGA	4 cut(s)	567, 1217, 1862, 2293
TaqII	GACCGA	1 cut(s)	2066
TatI	WGTACW	3 cut(s)	1039, 2197, 2483
TfiI	GAWTC	6 cut(s)	161, 1179, 1271, 1474, 2254, 2524
TscAI	CASTG	7 cut(s)	187, 249, 345, 1360, 1443, 1876, 2266
TseFI	GTSAC	6 cut(s)	244, 1044, 1369, 1402, 1680, 2047
TseI	GCWGC	8 cut(s)	84, 185, 194, 902, 1096, 1433, 1889, 1892
Tsp45I	GTSAC	6 cut(s)	244, 1044, 1369, 1402, 1680, 2047
TspDTI	ATGAA	7 cut(s)	35, 598, 1917, 1931, 2009, 2331, 2452
TspMI	CCCGGG	1 cut(s)	1265
TspRI	CASTG	7 cut(s)	187, 249, 345, 1360, 1443, 1876, 2266
Van91I	CCANNNNNTGG	2 cut(s)	1293, 2501
Vha464I	CTTAAG	3 cut(s)	1735, 1789, 1820
VpaK11BI	GGWCC	5 cut(s)	239, 1022, 1164, 1250, 1961
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	7 cut(s)	733, 748, 809, 1075, 2288, 2307, 2415
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1951
XmaI	CCCGGG	1 cut(s)	1265
XmaJI	CCTAGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	2 cut(s)	970, 2583
ZraI	GACGTC	1 cut(s)	1423
ZrmI	AGTACT	3 cut(s)	1041, 2199, 2485
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.