Rh6AG445300

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
63236341 .. 63250623
14283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG445300.1

Sequence Viewer

Length: 1956 bp
ATGATGAAGAAGAACCATACCAACCTTCACCTTCTTATCTCTATCTTTTTCCTCTTTACTTTCTGTTCATGGGTTTCCTTAGCCCTGGCACAATCTGAAACCATTATCCCAGTGAATGTGGGGGTTGTTCTCGATGACCTTAAGTATTCATTGACCAAGGATATTTGGTTGCGTTGCATGAAAATGGCTCTCGCAGACTTCTATGCTACTCATGCTCACTACAACACTAGGCTTGTTTTGAACACTAGGCACTGCAGAGAAAGTGTTGTCAGTGCAGCTGCTGCAGCTCTAGATCTGATAAAGAATGAACGAGTGAAAGCCATCATAGGGCCAGTGACATCCATGCAGACGAGCTTTGTCATTAATTTTGGAAACCAGGCTCATGTACCTATTATATCATTTTCTGCTACAAGCCCTTCTCTTACTTCTCTCCGGATCCCCTATTTCTTTCAATTTGCACAAACTGACTCATCCCAAGTGGAAGCCATTAGTGCAATTGTTCAAGCCTTTGGATGGAGACAAGTCGTGCCTATCTATATAGAAACTGAGTATGGGGAGGGAATCATACCATACTTAACTGACGCCTTGCATGAGGTAAATGCTCGTGTCCCATACCGAAGTGTCATTCCCTCATCAGCCACTGATGGTCAAATAGTTCAAGAACTTTCCAAGTTGATGACAATGGAAACCAGAGTCTTCATTGTCCACATGACAACTGATCTATCCTCTAGATTATTTGTCAAGGCAAAAGAGATTGGGATGATGAGTAAAGGGTATGTATGGCTCACTACTAATGAGATACTTAATAGATTACAGTCACAAAATTCTACTGTCATTGATTCCATGCAAGGTGTACTGGGTGTACAAACTTTTGTTCCACTAACACCAGAGCTTGACGAACTCAAGATACGGTTGAAACAGCAATTCCATACACACAATCCAGCCATTAGTGCTGAATTGGATGTTTTTGGACTTTGGGCTTATGATGCTGTTTTTGCAGTGGCCATGGCAATTGAACAAGTAATTGGAACTCCAACTAGCTTTCCCTTCCAAGAGTCAAATGCTGCTTCCATCAACTCGACAGATCTTGAAGGTTTTCCAGTCTCTCAATATGGGCCAAAACTTCTCAGAGCTCTGTCAACTGCTAGATTTGAAGGGATAGCTGGACATTTCACGGTTGTTGGTGGGAAACGCAACTCATCAAATTTTCAGATAGTCAGTGTGAATGGCGGTGGAGCAAGAACAATTGGATTTTGGACACTCAAAGGCCTTGTGAAAACATTGAATTCATCAGCAGGCTCGAGGAAAATTTCAAGTTCCAAATTTGACTTTGGACCTATTAGGTGGCCGGGAGATTCTCTATCTGTTCCCAAAGGATGGGAATTCCCAACAAAAGGAAAGAAATTGAGAATTGGAGTTCCTGTCAAGGTTGATTTTACTGAGTTTGTTAAGGTAGCAAAAGACAGAACCAACACAACGGTTGTCACAGGCTTCAGTGTTGATGTATTTAAGGCTGCAGTGAGACTATTACCATATGCTCTTTCTTATGAGTTCATTCCCTTTGCAAACCCTGATGGCACCAGTGCCGGCACTTACAATCAGTTGTGCTATCAAGTATATCTTGGGAACTTTGATGCTGTGGTGGGAGATACAACTATTAGAGCAGACAGGTCATTATATGTGGACTTTACAATGCCATACTCAGAATCTGGTGTAGCAATGGTTGTGCCAGTCATCGACTTCAAGAGCAAACATGTATTGGCTTTCTTGAAGCCTTGGACATGGGACCTGTGGCTAACAATTTGTTTTTTCTTTGTCTATATTGGTTTTGTGGTTTGGGTTCTTGAACATCGAATTAATAAAGAATTCCGTGGCCCTCTCTTACATCAAGTTGGCACCAGTGTCTGGTTCTCGTGCTCAACCATGGTGTTTGCACATAGTAATCTCTCTTTCTAA

Protein Analysis

651

Amino Acids

72.53

Weight (kDa)

8.77

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 54 - 409 7.3e-17 Periplasmic binding protein
ANF_receptor PF01094 57 - 410 4e-79 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 486 - 576 6.3e-06 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 594 - 645 2.6e-08 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1577, 1895
AccB7I CCANNNNNTGG 2 cut(s) 1377, 1905
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 1 cut(s) 1230
AclWI GGATC 2 cut(s) 430, 443
AcoI YGGCCR 2 cut(s) 1002, 1346
AcsI RAATTY 7 cut(s) 823, 1204, 1285, 1308, 1322, 1382, 1865
AcuI CTGAAG 1 cut(s) 1477
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 3 cut(s) 387, 855, 864
AfiI CCNNNNNNNGG 5 cut(s) 327, 513, 1377, 1394, 1905
AflII CTTAAG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 1753
AjnI CCWGG 2 cut(s) 84, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 1008, 1040
AluBI AGCT 7 cut(s) 278, 287, 354, 892, 1041, 1133, 1163
AluI AGCT 7 cut(s) 278, 287, 354, 892, 1041, 1133, 1163
Alw21I GWGCWC 2 cut(s) 1135, 1919
Alw26I GTCTC 3 cut(s) 511, 1108, 1516
AlwI GGATC 2 cut(s) 430, 443
AlwNI CAGNNNCTG 4 cut(s) 281, 641, 1709, 1905
Ama87I CYCGRG 1 cut(s) 1300
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 6 cut(s) 329, 1002, 1115, 1267, 1346, 1873
ApeKI GCWGC 6 cut(s) 275, 278, 281, 284, 1064, 1514
ApoI RAATTY 7 cut(s) 823, 1204, 1285, 1308, 1322, 1382, 1865
AseI ATTAAT 2 cut(s) 363, 1857
Asp700I GAANNNNTTC 1 cut(s) 1095
AspS9I GGNCC 5 cut(s) 329, 1115, 1334, 1786, 1874
AsuC2I CCSGG 1 cut(s) 1350
AsuHPI GGTGA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 1300
AvaII GGWCC 2 cut(s) 1334, 1786
BalI TGGCCA 1 cut(s) 1004
BamHI GGATCC 1 cut(s) 435
BanI GGYRCC 2 cut(s) 1577, 1895
BanII GRGCYC 1 cut(s) 1135
BauI CACGAG 2 cut(s) 603, 1912
BbsI GAAGAC 1 cut(s) 688
Bbv12I GWGCWC 2 cut(s) 1135, 1919
BbvI GCAGC 6 cut(s) 265, 268, 287, 296, 1051, 1501
BccI CCATC 6 cut(s) 329, 507, 638, 1079, 1371, 1568
BciT130I CCWGG 2 cut(s) 86, 377
BcnI CCSGG 1 cut(s) 1350
BcoDI GTCTC 3 cut(s) 511, 1108, 1516
BfaI CTAG 6 cut(s) 228, 246, 290, 729, 1038, 1146
BfmI CTRYAG 3 cut(s) 253, 282, 1515
BfrI CTTAAG 1 cut(s) 140
BglII AGATCT 2 cut(s) 292, 1084
BisI GCNGC 6 cut(s) 276, 279, 282, 285, 1065, 1515
BlsI GCNGC 6 cut(s) 277, 280, 283, 286, 1066, 1516
Bme1390I CCNGG 3 cut(s) 86, 377, 1350
Bme18I GGWCC 2 cut(s) 1334, 1786
BmeT110I CYCGRG 1 cut(s) 1300
BmgT120I GGNCC 5 cut(s) 329, 1115, 1334, 1786, 1874
BmiI GGNNCC 4 cut(s) 437, 1579, 1787, 1897
BmrFI CCNGG 3 cut(s) 86, 377, 1350
BmrI ACTGGG 2 cut(s) 104, 866
BmsI GCATC 2 cut(s) 976, 1624
BmuI ACTGGG 2 cut(s) 104, 866
BpiI GAAGAC 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 1 cut(s) 1350
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 6 cut(s) 84, 156, 1005, 1775, 1870, 1923
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 1407, 1437
Bsc4I CCNNNNNNNGG 5 cut(s) 327, 513, 1377, 1394, 1905
Bse118I RCCGGY 1 cut(s) 1586
Bse1I ACTGG 7 cut(s) 110, 332, 861, 1100, 1581, 1730, 1899
Bse3DI GCAATG 1 cut(s) 1725
BseAI TCCGGA 1 cut(s) 432
BseBI CCWGG 2 cut(s) 86, 377
BseDI CCNNGG 6 cut(s) 84, 156, 1005, 1775, 1870, 1923
BseGI GGATG 6 cut(s) 338, 470, 518, 765, 967, 1382
BseLI CCNNNNNNNGG 5 cut(s) 327, 513, 1377, 1394, 1905
BseMI GCAATG 1 cut(s) 1725
BseMII CTCAG 4 cut(s) 537, 1141, 1431, 1716
BseNI ACTGG 7 cut(s) 110, 332, 861, 1100, 1581, 1730, 1899
BseXI GCAGC 6 cut(s) 265, 268, 287, 296, 1051, 1501
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 6 cut(s) 331, 1004, 1117, 1269, 1348, 1875
BshNI GGYRCC 2 cut(s) 1577, 1895
BsiHKAI GWGCWC 2 cut(s) 1135, 1919
BsiHKCI CYCGRG 1 cut(s) 1300
BsiSI CCGG 3 cut(s) 433, 1349, 1587
BslFI GGGAC 2 cut(s) 593, 1799
BslI CCNNNNNNNGG 5 cut(s) 327, 513, 1377, 1394, 1905
BsmAI GTCTC 3 cut(s) 511, 1108, 1516
BsmFI GGGAC 2 cut(s) 593, 1799
BsnI GGCC 6 cut(s) 331, 1004, 1117, 1269, 1348, 1875
BsoBI CYCGRG 1 cut(s) 1300
Bsp1286I GDGCHC 2 cut(s) 1135, 1919
Bsp13I TCCGGA 1 cut(s) 432
Bsp1407I TGTACA 1 cut(s) 862
Bsp143I GATC 4 cut(s) 292, 435, 718, 1084
Bsp19I CCATGG 2 cut(s) 1005, 1923
BspACI CCGC 1 cut(s) 1230
BspANI GGCC 6 cut(s) 331, 1004, 1117, 1269, 1348, 1875
BspCNI CTCAG 4 cut(s) 538, 1140, 1432, 1715
BspEI TCCGGA 1 cut(s) 432
BspLI GGNNCC 4 cut(s) 437, 1579, 1787, 1897
BspMAI CTGCAG 3 cut(s) 257, 286, 1519
BspPI GGATC 2 cut(s) 430, 443
BspT107I GGYRCC 2 cut(s) 1577, 1895
BspTI CTTAAG 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 1725
BsrFI RCCGGY 1 cut(s) 1586
BsrGI TGTACA 1 cut(s) 862
BsrI ACTGG 7 cut(s) 110, 332, 861, 1100, 1581, 1730, 1899
BssAI RCCGGY 1 cut(s) 1586
BssECI CCNNGG 6 cut(s) 84, 156, 1005, 1775, 1870, 1923
BssMI GATC 4 cut(s) 292, 435, 718, 1084
BssNI GRCGYC 1 cut(s) 582
BssSI CACGAG 2 cut(s) 603, 1912
BssT1I CCWWGG 4 cut(s) 156, 1005, 1775, 1923
Bst2BI CACGAG 2 cut(s) 603, 1912
Bst2UI CCWGG 2 cut(s) 86, 377
Bst4CI ACNGT 5 cut(s) 816, 832, 912, 1177, 1480
BstACI GRCGYC 1 cut(s) 582
BstAFI CTTAAG 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 862
BstC8I GCNNGC 2 cut(s) 1297, 1588
BstDEI CTNAG 5 cut(s) 79, 546, 1127, 1440, 1702
BstDSI CCRYGG 3 cut(s) 1005, 1870, 1923
BstF5I GGATG 6 cut(s) 338, 470, 518, 765, 967, 1382
BstKTI GATC 4 cut(s) 295, 438, 721, 1087
BstMAI GTCTC 3 cut(s) 511, 1108, 1516
BstMBI GATC 4 cut(s) 292, 435, 718, 1084
BstMWI GCNNNNNNNGC 7 cut(s) 212, 281, 284, 491, 950, 986, 995
BstNI CCWGG 2 cut(s) 86, 377
BstNSI RCATGY 1 cut(s) 1757
BstSCI CCNGG 3 cut(s) 84, 375, 1348
BstSFI CTRYAG 3 cut(s) 253, 282, 1515
BstV1I GCAGC 6 cut(s) 265, 268, 287, 296, 1051, 1501
BstV2I GAAGAC 1 cut(s) 688
BstX2I RGATCY 3 cut(s) 292, 435, 1084
BstYI RGATCY 3 cut(s) 292, 435, 1084
BsuRI GGCC 6 cut(s) 331, 1004, 1117, 1269, 1348, 1875
BtgI CCRYGG 3 cut(s) 1005, 1870, 1923
BtsCI GGATG 6 cut(s) 338, 470, 518, 765, 967, 1382
BtsI GCAGTG 3 cut(s) 250, 1005, 1524
Cac8I GCNNGC 2 cut(s) 1297, 1588
CaiI CAGNNNCTG 4 cut(s) 281, 641, 1709, 1905
Cfr10I RCCGGY 1 cut(s) 1586
Cfr13I GGNCC 5 cut(s) 329, 1115, 1334, 1786, 1874
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 386, 854, 863
CviQI GTAC 3 cut(s) 386, 854, 863
DdeI CTNAG 5 cut(s) 79, 546, 1127, 1440, 1702
DpnI GATC 4 cut(s) 294, 437, 720, 1086
DpnII GATC 4 cut(s) 292, 435, 718, 1084
EaeI YGGCCR 2 cut(s) 1002, 1346
Ecl136II GAGCTC 1 cut(s) 1133
Eco130I CCWWGG 4 cut(s) 156, 1005, 1775, 1923
Eco147I AGGCCT 1 cut(s) 1269
Eco24I GRGCYC 1 cut(s) 1135
Eco47I GGWCC 2 cut(s) 1334, 1786
Eco53kI GAGCTC 1 cut(s) 1133
Eco57I CTGAAG 1 cut(s) 1477
Eco88I CYCGRG 1 cut(s) 1300
EcoICRI GAGCTC 1 cut(s) 1133
EcoO109I RGGNCCY 1 cut(s) 1786
EcoRI GAATTC 3 cut(s) 1285, 1382, 1865
EcoRII CCWGG 2 cut(s) 84, 375
EcoT14I CCWWGG 4 cut(s) 156, 1005, 1775, 1923
EcoT38I GRGCYC 1 cut(s) 1135
ErhI CCWWGG 4 cut(s) 156, 1005, 1775, 1923
FalI AAGNNNNNCTT 2 cut(s) 1605, 1637
FaqI GGGAC 2 cut(s) 593, 1799
FauNDI CATATG 1 cut(s) 1534
Fnu4HI GCNGC 6 cut(s) 276, 279, 282, 285, 1065, 1515
FokI GGATG 6 cut(s) 325, 457, 525, 772, 974, 1389
FriOI GRGCYC 1 cut(s) 1135
Fsp4HI GCNGC 6 cut(s) 276, 279, 282, 285, 1065, 1515
FspBI CTAG 6 cut(s) 228, 246, 290, 729, 1038, 1146
GluI GCNGC 6 cut(s) 276, 279, 282, 285, 1065, 1515
HaeIII GGCC 6 cut(s) 331, 1004, 1117, 1269, 1348, 1875
HapII CCGG 3 cut(s) 433, 1349, 1587
HgaI GACGC 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 1140
HindII GTYRAC 1 cut(s) 1140
HinfI GANTC 7 cut(s) 467, 561, 693, 839, 1055, 1355, 1706
HpaII CCGG 3 cut(s) 433, 1349, 1587
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 5 cut(s) 706, 854, 863, 1140, 1684
Hpy188I TCNGA 5 cut(s) 97, 297, 1130, 1212, 1705
Hpy8I GTNNAC 5 cut(s) 706, 854, 863, 1140, 1684
HpyAV CCTTC 6 cut(s) 35, 41, 426, 1057, 1085, 1148
HpyCH4III ACNGT 5 cut(s) 816, 832, 912, 1177, 1480
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 281, 284, 491, 950, 986, 995
HpyF3I CTNAG 5 cut(s) 79, 546, 1127, 1440, 1702
Hsp92I GRCGYC 1 cut(s) 582
Kpn2I TCCGGA 1 cut(s) 432
KroI GCCGGC 1 cut(s) 1586
KroNI GCCGGC 1 cut(s) 1588
Kzo9I GATC 4 cut(s) 292, 435, 718, 1084
LmnI GCTCC 1 cut(s) 1235
Lsp1109I GCAGC 6 cut(s) 265, 268, 287, 296, 1051, 1501
LweI GCATC 2 cut(s) 976, 1624
MaeI CTAG 6 cut(s) 228, 246, 290, 729, 1038, 1146
MaeIII GTNAC 3 cut(s) 334, 816, 1483
MalI GATC 4 cut(s) 294, 437, 720, 1086
MboI GATC 4 cut(s) 292, 435, 718, 1084
MboII GAAGA 3 cut(s) 19, 22, 688
MfeI CAATTG 3 cut(s) 495, 1011, 1245
MflI RGATCY 3 cut(s) 292, 435, 1084
MhlI GDGCHC 2 cut(s) 1135, 1919
MlsI TGGCCA 1 cut(s) 1004
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 3 cut(s) 461, 702, 1064
MmeI TCCRAC 1 cut(s) 1058
MnlI CCTC 7 cut(s) 62, 550, 586, 640, 736, 1296, 1887
Mox20I TGGCCA 1 cut(s) 1004
MroI TCCGGA 1 cut(s) 432
MroNI GCCGGC 1 cut(s) 1586
MroXI GAANNNNTTC 1 cut(s) 1095
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 7 cut(s) 141, 363, 575, 804, 1449, 1509, 1857
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 3 cut(s) 433, 1349, 1587
MspR9I CCNGG 3 cut(s) 86, 377, 1350
MunI CAATTG 3 cut(s) 495, 1011, 1245
MvaI CCWGG 2 cut(s) 86, 377
MwoI GCNNNNNNNGC 7 cut(s) 212, 281, 284, 491, 950, 986, 995
NaeI GCCGGC 1 cut(s) 1588
NciI CCSGG 1 cut(s) 1350
NcoI CCATGG 2 cut(s) 1005, 1923
NdeI CATATG 1 cut(s) 1534
NdeII GATC 4 cut(s) 292, 435, 718, 1084
NgoMIV GCCGGC 1 cut(s) 1586
NlaIV GGNNCC 4 cut(s) 437, 1579, 1787, 1897
NmuCI GTSAC 3 cut(s) 334, 816, 1483
NspI RCATGY 1 cut(s) 1757
PaeR7I CTCGAG 1 cut(s) 1300
PceI AGGCCT 1 cut(s) 1269
PciI ACATGT 1 cut(s) 1753
PdiI GCCGGC 1 cut(s) 1588
PdmI GAANNNNTTC 1 cut(s) 1095
PfeI GAWTC 4 cut(s) 561, 839, 1355, 1706
PflMI CCANNNNNTGG 2 cut(s) 1377, 1905
PkrI GCNGC 6 cut(s) 277, 280, 283, 286, 1066, 1516
PleI GAGTC 3 cut(s) 461, 701, 1063
PpsI GAGTC 3 cut(s) 461, 701, 1063
PpuMI RGGWCCY 1 cut(s) 1786
PscI ACATGT 1 cut(s) 1753
PshBI ATTAAT 2 cut(s) 363, 1857
Psp124BI GAGCTC 1 cut(s) 1135
Psp5II RGGWCCY 1 cut(s) 1786
Psp6I CCWGG 2 cut(s) 84, 375
PspGI CCWGG 2 cut(s) 84, 375
PspN4I GGNNCC 4 cut(s) 437, 1579, 1787, 1897
PspPI GGNCC 5 cut(s) 329, 1115, 1334, 1786, 1874
PspPPI RGGWCCY 1 cut(s) 1786
PspXI VCTCGAGB 1 cut(s) 1300
PsrI GAACNNNNNNTAC 2 cut(s) 891, 923
PstI CTGCAG 3 cut(s) 257, 286, 1519
PstNI CAGNNNCTG 4 cut(s) 281, 641, 1709, 1905
PsuI RGATCY 3 cut(s) 292, 435, 1084
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 3 cut(s) 387, 855, 864
RsaNI GTAC 3 cut(s) 386, 854, 863
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 1 cut(s) 1135
SaqAI TTAA 7 cut(s) 141, 363, 575, 804, 1449, 1509, 1857
SatI GCNGC 6 cut(s) 276, 279, 282, 285, 1065, 1515
Sau3AI GATC 4 cut(s) 292, 435, 718, 1084
Sau96I GGNCC 5 cut(s) 329, 1115, 1334, 1786, 1874
SchI GAGTC 3 cut(s) 461, 702, 1064
ScrFI CCNGG 3 cut(s) 86, 377, 1350
SduI GDGCHC 2 cut(s) 1135, 1919
SfaNI GCATC 2 cut(s) 976, 1624
SfcI CTRYAG 3 cut(s) 253, 282, 1515
Sfr274I CTCGAG 1 cut(s) 1300
SinI GGWCC 2 cut(s) 1334, 1786
SlaI CTCGAG 1 cut(s) 1300
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 3 cut(s) 140, 902, 1300
SmoI CTYRAG 3 cut(s) 140, 902, 1300
SseBI AGGCCT 1 cut(s) 1269
SsiI CCGC 1 cut(s) 1230
SspMI CTAG 6 cut(s) 228, 246, 290, 729, 1038, 1146
SstI GAGCTC 1 cut(s) 1135
StuI AGGCCT 1 cut(s) 1269
StyD4I CCNGG 3 cut(s) 84, 375, 1348
StyI CCWWGG 4 cut(s) 156, 1005, 1775, 1923
TaaI ACNGT 5 cut(s) 816, 832, 912, 1177, 1480
TaqI TCGA 5 cut(s) 132, 1079, 1301, 1737, 1852
TatI WGTACW 2 cut(s) 853, 862
TfiI GAWTC 4 cut(s) 561, 839, 1355, 1706
Tru1I TTAA 7 cut(s) 141, 363, 575, 804, 1449, 1509, 1857
Tru9I TTAA 7 cut(s) 141, 363, 575, 804, 1449, 1509, 1857
TseFI GTSAC 3 cut(s) 334, 816, 1483
TseI GCWGC 6 cut(s) 275, 278, 281, 284, 1064, 1514
Tsp45I GTSAC 3 cut(s) 334, 816, 1483
TspDTI ATGAA 8 cut(s) 20, 57, 138, 194, 321, 688, 1278, 1543
TspGWI ACGGA 1 cut(s) 1859
Van91I CCANNNNNTGG 2 cut(s) 1377, 1905
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 1334, 1786
VspI ATTAAT 2 cut(s) 363, 1857
XapI RAATTY 7 cut(s) 823, 1204, 1285, 1308, 1322, 1382, 1865
XbaI TCTAGA 2 cut(s) 289, 728
XceI RCATGY 1 cut(s) 1757
XhoI CTCGAG 1 cut(s) 1300
XmnI GAANNNNTTC 1 cut(s) 1095
XspI CTAG 6 cut(s) 228, 246, 290, 729, 1038, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.