Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

34580569 .. 34587068

Gene Structure 6500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2919 bp

ATGGAGAATCGGAAGAGGAGGATCAGTATCAACCTTGTTCTTTTGTCATGGATTTTCATGGTGGCCGCCATTGCAGCTGAAAACACATCAACAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTGATGAAGTGAGTGGGAAGATGTATTTGAGTTGCATAGAAATGGCGCTCTCAGACTTCTATGCTTCCCATACTCAATACAAGACTAGGGTCGTTTTGAACACCAGTAACTCCCACGAAGATGTCGTTGGTGCAGCTGATGCAGGTATCTCTCAGAAACTCTCGGGTTTATTTTATAATGAGACAGCTTTGGATCTGATAACGAATGTAGAAGTGAAAGCAATCCTAGGACCAATGACATCAATGCAAGCAACTTTTGTTGTTAAACTTGGAGAAAAAGCTCATGTGCCAATCATATCATTTTCTGCAACAAGCCCTTCTCTTACTTCACTTCAGAGCTCCTATTTTTTCCAATTTGCACAAAATGACTCAACCCAAGTGAAAGCCATAAGTGGTATTGTTCAAAACTTTGGATGGAGGCGAGTTGTCCCCATTTACGTAGACAATATGTACGGGGAAGGAATCATGCCCTTTCTAATTGATGCCTTGCTCGAGGTTGATGCTCATGTCCCATATCGAAGTGTAATTTCACAATCAGCCACCGATGATCAAATTGAGATAGAACTTTACGAGTTAATGACAATGCAGACTAGAGTCTTCATAGTGCATATGATGCCTAAACTTGCATCCCAGTTATTTGCCAAGGCGAAAGAGATTGGAATGATGAACAAGGGTTTTGTATGGATCACGACCAATGGGATTGGAGATCGTTTAAAGGCAATGGAATCTGTTCTGAATTCAATGCAAGGAGTCTTATGTGTGGAAACTGATGTTTCAGACACATTTAAGCTTAGAGATTTCAAAACAAGGTGGAAAAGGCAATTCCAACAAGAAAATCCAGAAATCATTGATGTCGAGTTGGATGCTTTTGGATATCGGGCTTATGATGCGGCTTTTGCAATAGCTATGGCAGTTGAAAAAGTTGGGAATGCAAGCTTTGGATCTCAAAAGGGAAATGCTTCATCTTTCAACTCTACAGATCTTGGAAGTTTAAAGGTCTCTCAATATGGTTCAAACGTTTCTAATGCCTTATCACTCACGAGTTTTAGAGGCTTGGCTGGCAATTTTAGTCTTGTTGATAGGCAACTTCAACTATCGACTTTTAAGATTGTTAATGTCAATGGTAATGGAGGAAGAGGAAGAGCAGTTGGGTATTGGACACCGGAAAATGGAAGGTTAGTGAATTCAACAAACAGTTGTAATGTTTCAGCTTTCAATTGTGATGCTCTTGGACCCATTATATGGCCGGGAGAGTCATTATCCGTTCCCAAAGGATGGGAGATCCCGGAAAATGGTACGAAGTTGAGAATTGGAGTTCCAGTGAGGGATGGTTTTTCAGAATTTGTTAAAGTAACACCAAATTTGAGAACTAATACCAGTGATGTCACCGGGTTCAGTATTGATGTGTTTAAGGCTGCAGTGGACCTGTTACCATATGCACTTCCTTATGAATTGATTCCCTATGCATATCCTAACGGCAGCAGTGCTGGCACGTATAATGATTTAATCTATCAAGTATACCTTGGGAAGTTCGATGCTGTGGTTGGAGATGCAACAATTAGAGCAAATAGAACATTGTACGTGGACTTTGCAATGCCATATACAGAGTCTGGCGTAGTAATGGTTGTACCAATCATAGACAGCACTCACAGCAGAACCAAAAATGCATGGGTTTTTTTGCAGCCTTTAACATGGGGCCTTTGGATGACGATTTTGTGTTTTTTCATCTTTATTGGTTTTGTGATTTGGGTGCTTGAACACCGAATTAATGAAGATTTTCGTGGTCCTCCTTCATATCAAGTTGGCACAAGCTTTTGGTTCTCTTTTTCAACCATAGTTTTTTCACAAATGGTTAGCAACTTGGGAAGATTTGTGATGATTATATGGGTATTTGTTGTGCTGATAGTGACACAAAGCTATACTGCTAATCTAGCATCACTATTAACTGTTCAACAACTCCGACCAGCTGTTGACGATTTAAATGTTCTTTTAAGGAATGGAGAAAAAGTTGGCTACATGAAGGATGCTTTTGTATATGATCTCTTGATACAAAGAGGTTTTGATGATTCCAAGCTCAAGGCTTGTGGATCTATGGAAGAAATAGATGACGCTCTTTCAAAAGGGAGTGCAAATGGTGGTATTGCTGCAATTGTTCATGAAACCCCCTACATGAAGCTATTCGTTGCAAAATATTGTTCCAAGTATACTATGATTGGACCAATATTTAAAACCGATGGCTTTGGCTTCGCATTTCCAAAAGGTTCCCCTCTTGTTTCTGAAATTACACAAGCAATCCTAAATTTGACAGATGATGGATTGATGGGAATGATTGAAGATAAATGGATCAAGAAAGATAGTAACTGTAAAAACTCTACTGGGAACTTTTCTAGCACTGCTCTTGGCCTTGAGAGCTTTTGGGGTCTTTTTTTAATTGCAGGGATAGCTTCAATCTTTGCTCTAATCACATCTGTAACTTCCTTCTTGTACGAGCATAAGCATGTCTTGATGCCCCCCGATTCAGGCACCTCGAAGTGGAAAAGGATCAGAGCCATGTTCGAGATCTTTAACAAAAGAGAACTTAGCTCTCATACTTTTAGAAGTAGTCGACATACAGACAGTTATACTGGTACTCGACATCATGAAGTGAAAGGCTCATCACCAAATCACAACTGGCCAGAGAGTCCACAAAGTTGTATCAACCATGCAGATACAGTTTCTGTATCCTCTCGTGGTCAAGCATCTCCAGAAACCAACCCAACTTTGGAGCTTGCCATAACTGTTCAAGAAACGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

972

Amino Acids

107.63

Weight (kDa)

6.0

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	53 - 417	3.2e-69	Receptor family ligand binding region
Peripla_BP_6	PF13458	103 - 351	7.7e-15	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	495 - 584	2.8e-06	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	499 - 824	8e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	606 - 856	1.3e-36	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	2645
AccB7I	CCANNNNNTGG	2 cut(s)	1365, 1398
AccI	GTMKAC	5 cut(s)	120, 564, 1641, 2327, 2728
AciI	CCGC	2 cut(s)	66, 1013
AclI	AACGTT	1 cut(s)	1140
AclWI	GGATC	8 cut(s)	29, 324, 815, 1072, 1399, 2218, 2474, 2672
AcoI	YGGCCR	3 cut(s)	63, 1367, 2795
AcsI	RAATTY	5 cut(s)	859, 1306, 1463, 1483, 2422
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	6 cut(s)	575, 1420, 1703, 1752, 2609, 2752
AfiI	CCNNNNNNNGG	7 cut(s)	1292, 1365, 1398, 1415, 2642, 2655, 2884
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	299, 1126
AlwI	GGATC	8 cut(s)	29, 324, 815, 1072, 1399, 2218, 2474, 2672
AlwNI	CAGNNNCTG	2 cut(s)	1733, 2840
Ama87I	CYCGRG	2 cut(s)	286, 614
AoxI	GGCC	5 cut(s)	63, 1367, 1819, 2524, 2795
ApeKI	GCWGC	6 cut(s)	74, 257, 1538, 1602, 1804, 2267
ApoI	RAATTY	5 cut(s)	859, 1306, 1463, 1483, 2422
AseI	ATTAAT	1 cut(s)	1890
Asp700I	GAANNNNTTC	5 cut(s)	852, 1081, 1578, 1899, 2300
AspA2I	CCTAGG	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	6 cut(s)	353, 1355, 1546, 1819, 1907, 2339
AsuC2I	CCSGG	3 cut(s)	1371, 1409, 1513
AsuHPI	GGTGA	2 cut(s)	1501, 2772
AvaI	CYCGRG	2 cut(s)	286, 614
AvaII	GGWCC	5 cut(s)	353, 1355, 1546, 1907, 2339
AvrII	CCTAGG	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	2797
BanI	GGYRCC	1 cut(s)	2645
BanII	GRGCYC	1 cut(s)	464
BauI	CACGAG	2 cut(s)	1162, 2850
BbsI	GAAGAC	1 cut(s)	712
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	6 cut(s)	86, 269, 1525, 1614, 1816, 2254
BccI	CCATC	6 cut(s)	531, 1392, 1445, 2351, 2429, 2437
BceAI	ACGGC	1 cut(s)	1615
BcgI	CGANNNNNNTGC	4 cut(s)	605, 639, 968, 1002
BciVI	GTATCC	1 cut(s)	2854
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	3 cut(s)	1371, 1409, 1513
BcoDI	GTCTC	2 cut(s)	299, 1126
BfaI	CTAG	5 cut(s)	210, 350, 714, 2054, 2511
BfmI	CTRYAG	2 cut(s)	1098, 1539
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	257
BfuI	GTATCC	1 cut(s)	2854
BglII	AGATCT	2 cut(s)	1102, 2682
BisI	GCNGC	8 cut(s)	66, 75, 258, 1014, 1539, 1603, 1805, 2268
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	8 cut(s)	67, 76, 259, 1015, 1540, 1604, 1806, 2269
Bme1390I	CCNGG	3 cut(s)	1371, 1409, 1513
Bme18I	GGWCC	5 cut(s)	353, 1355, 1546, 1907, 2339
BmeT110I	CYCGRG	2 cut(s)	286, 614
BmgT120I	GGNCC	6 cut(s)	353, 1355, 1546, 1819, 1907, 2339
BmiI	GGNNCC	4 cut(s)	1357, 1820, 2386, 2647
BmrFI	CCNGG	3 cut(s)	1371, 1409, 1513
BmrI	ACTGGG	3 cut(s)	92, 748, 2508
BmuI	ACTGGG	3 cut(s)	92, 748, 2508
BoxI	GACNNNNGTC	2 cut(s)	212, 716
BpiI	GAAGAC	1 cut(s)	712
BpmI	CTGGAG	1 cut(s)	2850
BpuEI	CTTGAG	2 cut(s)	2183, 2549
BpuMI	CCSGG	3 cut(s)	1371, 1409, 1513
BsaAI	YACGTR	3 cut(s)	562, 1617, 1705
BsaBI	GATNNNNATC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	1126
BsaJI	CCNNGG	3 cut(s)	349, 765, 1645
BsaWI	WCCGGW	1 cut(s)	1285
BsaXI	ACNNNNNCTCC	8 cut(s)	10, 40, 102, 132, 1428, 1458, 2115, 2145
Bsc4I	CCNNNNNNNGG	7 cut(s)	1292, 1365, 1398, 1415, 2642, 2655, 2884
Bse1I	ACTGG	8 cut(s)	98, 228, 754, 1442, 1500, 2503, 2752, 2798
Bse3DI	GCAATG	3 cut(s)	69, 849, 1722
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	349, 765, 1645
BseGI	GGATG	7 cut(s)	542, 749, 991, 1403, 1456, 1833, 2152
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	7 cut(s)	1292, 1365, 1398, 1415, 2642, 2655, 2884
BseMI	GCAATG	3 cut(s)	69, 849, 1722
BseMII	CTCAG	2 cut(s)	189, 290
BseNI	ACTGG	8 cut(s)	98, 228, 754, 1442, 1500, 2503, 2752, 2798
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	6 cut(s)	86, 269, 1525, 1614, 1816, 2254
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	5 cut(s)	65, 1369, 1821, 2526, 2797
BshNI	GGYRCC	1 cut(s)	2645
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	2 cut(s)	286, 614
BsiSI	CCGG	4 cut(s)	1286, 1370, 1409, 1512
BslFI	GGGAC	2 cut(s)	536, 617
BslI	CCNNNNNNNGG	7 cut(s)	1292, 1365, 1398, 1415, 2642, 2655, 2884
BsmAI	GTCTC	2 cut(s)	299, 1126
BsmFI	GGGAC	2 cut(s)	536, 617
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	5 cut(s)	65, 1369, 1821, 2526, 2797
Bso31I	GGTCTC	1 cut(s)	1126
BsoBI	CYCGRG	2 cut(s)	286, 614
Bsp1286I	GDGCHC	1 cut(s)	464
BspACI	CCGC	2 cut(s)	66, 1013
BspANI	GGCC	5 cut(s)	65, 1369, 1821, 2526, 2797
BspCNI	CTCAG	2 cut(s)	188, 289
BspHI	TCATGA	2 cut(s)	2278, 2761
BspLI	GGNNCC	4 cut(s)	1357, 1820, 2386, 2647
BspMAI	CTGCAG	1 cut(s)	1543
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	8 cut(s)	29, 324, 815, 1072, 1399, 2218, 2474, 2672
BspQI	GCTCTTC	1 cut(s)	1258
BspT107I	GGYRCC	1 cut(s)	2645
BspTNI	GGTCTC	1 cut(s)	1126
BsrDI	GCAATG	3 cut(s)	69, 849, 1722
BsrI	ACTGG	8 cut(s)	98, 228, 754, 1442, 1500, 2503, 2752, 2798
BssECI	CCNNGG	3 cut(s)	349, 765, 1645
BssNAI	GTATAC	2 cut(s)	1642, 2328
BssSI	CACGAG	2 cut(s)	1162, 2850
BssT1I	CCWWGG	3 cut(s)	349, 765, 1645
Bst1107I	GTATAC	2 cut(s)	1642, 2328
Bst2BI	CACGAG	2 cut(s)	1162, 2850
Bst4CI	ACNGT	6 cut(s)	1319, 2071, 2486, 2741, 2836, 2902
Bst6I	CTCTTC	3 cut(s)	8, 1252, 1258
BstAPI	GCANNNNNTGC	2 cut(s)	263, 736
BstBAI	YACGTR	3 cut(s)	562, 1617, 1705
BstC8I	GCNNGC	5 cut(s)	372, 1057, 1183, 1612, 2892
BstDEI	CTNAG	4 cut(s)	175, 276, 914, 2702
BstF5I	GGATG	7 cut(s)	542, 749, 991, 1403, 1456, 1833, 2152
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	299, 1126
BstNSI	RCATGY	1 cut(s)	2624
BstPAI	GACNNNNGTC	2 cut(s)	212, 716
BstSCI	CCNGG	3 cut(s)	1369, 1407, 1511
BstSFI	CTRYAG	2 cut(s)	1098, 1539
BstSNI	TACGTA	1 cut(s)	562
BstV1I	GCAGC	6 cut(s)	86, 269, 1525, 1614, 1816, 2254
BstV2I	GAAGAC	1 cut(s)	712
BstX2I	RGATCY	6 cut(s)	316, 1064, 1102, 1404, 2210, 2682
BstYI	RGATCY	6 cut(s)	316, 1064, 1102, 1404, 2210, 2682
BstZ17I	GTATAC	2 cut(s)	1642, 2328
BsuI	GTATCC	1 cut(s)	2854
BsuRI	GGCC	5 cut(s)	65, 1369, 1821, 2526, 2797
BtsCI	GGATG	7 cut(s)	542, 749, 991, 1403, 1456, 1833, 2152
BtsI	GCAGTG	3 cut(s)	1548, 1612, 2514
BtsIMutI	CAGTG	6 cut(s)	105, 1449, 1507, 1548, 1612, 2514
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	5 cut(s)	372, 1057, 1183, 1612, 2892
CaiI	CAGNNNCTG	2 cut(s)	1733, 2840
CciI	TCATGA	2 cut(s)	2278, 2761
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	6 cut(s)	353, 1355, 1546, 1819, 1907, 2339
CseI	GACGC	1 cut(s)	2240
Csp6I	GTAC	6 cut(s)	574, 1419, 1702, 1751, 2608, 2751
CspCI	CAANNNNNGTGG	2 cut(s)	2188, 2223
CviQI	GTAC	6 cut(s)	574, 1419, 1702, 1751, 2608, 2751
DdeI	CTNAG	4 cut(s)	175, 276, 914, 2702
DraI	TTTAAA	4 cut(s)	837, 1116, 2103, 2350
EaeI	YGGCCR	3 cut(s)	63, 1367, 2795
Eam1104I	CTCTTC	3 cut(s)	8, 1252, 1258
EarI	CTCTTC	3 cut(s)	8, 1252, 1258
Ecl136II	GAGCTC	1 cut(s)	462
Eco105I	TACGTA	1 cut(s)	562
Eco130I	CCWWGG	3 cut(s)	349, 765, 1645
Eco24I	GRGCYC	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	1126
Eco32I	GATATC	1 cut(s)	998
Eco47I	GGWCC	5 cut(s)	353, 1355, 1546, 1907, 2339
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	2 cut(s)	286, 614
EcoICRI	GAGCTC	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	1819
EcoRI	GAATTC	2 cut(s)	859, 1306
EcoRV	GATATC	1 cut(s)	998
EcoT14I	CCWWGG	3 cut(s)	349, 765, 1645
EcoT22I	ATGCAT	2 cut(s)	1591, 1792
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	3 cut(s)	349, 765, 1645
FalI	AAGNNNNNCTT	4 cut(s)	1629, 1661, 2609, 2641
FaqI	GGGAC	2 cut(s)	536, 617
FauNDI	CATATG	2 cut(s)	732, 1558
FbaI	TGATCA	1 cut(s)	670
FblI	GTMKAC	5 cut(s)	120, 564, 1641, 2327, 2728
Fnu4HI	GCNGC	8 cut(s)	66, 75, 258, 1014, 1539, 1603, 1805, 2268
FokI	GGATG	7 cut(s)	549, 736, 998, 1410, 1463, 1840, 2159
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	8 cut(s)	66, 75, 258, 1014, 1539, 1603, 1805, 2268
FspBI	CTAG	5 cut(s)	210, 350, 714, 2054, 2511
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	8 cut(s)	66, 75, 258, 1014, 1539, 1603, 1805, 2268
GsuI	CTGGAG	1 cut(s)	2850
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	5 cut(s)	65, 1369, 1821, 2526, 2797
HapII	CCGG	4 cut(s)	1286, 1370, 1409, 1512
HgaI	GACGC	1 cut(s)	2240
HhaI	GCGC	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	2 cut(s)	2095, 2729
HindII	GTYRAC	2 cut(s)	2095, 2729
HindIII	AAGCTT	3 cut(s)	911, 1057, 1933
HpaII	CCGG	4 cut(s)	1286, 1370, 1409, 1512
HphI	GGTGA	2 cut(s)	1501, 2772
HpyAV	CCTTC	6 cut(s)	450, 575, 1290, 1923, 2137, 2611
HpyCH4III	ACNGT	6 cut(s)	1319, 2071, 2486, 2741, 2836, 2902
HpyCH4IV	ACGT	5 cut(s)	105, 561, 1140, 1616, 1704
HpyF3I	CTNAG	4 cut(s)	175, 276, 914, 2702
HpySE526I	ACGT	5 cut(s)	105, 561, 1140, 1616, 1704
HspAI	GCGC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	670
LguI	GCTCTTC	1 cut(s)	1258
LmnI	GCTCC	2 cut(s)	467, 2887
Lsp1109I	GCAGC	6 cut(s)	86, 269, 1525, 1614, 1816, 2254
MaeI	CTAG	5 cut(s)	210, 350, 714, 2054, 2511
MaeII	ACGT	5 cut(s)	105, 561, 1140, 1616, 1704
MaeIII	GTNAC	7 cut(s)	230, 1474, 1507, 1551, 2029, 2480, 2593
MfeI	CAATTG	2 cut(s)	1339, 2271
MflI	RGATCY	6 cut(s)	316, 1064, 1102, 1404, 2210, 2682
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	1 cut(s)	2797
MluNI	TGGCCA	1 cut(s)	2797
MlyI	GAGTC	6 cut(s)	485, 726, 882, 1385, 1739, 2812
MmeI	TCCRAC	4 cut(s)	963, 973, 1648, 2107
Mox20I	TGGCCA	1 cut(s)	2797
Mph1103I	ATGCAT	2 cut(s)	1591, 1792
MroXI	GAANNNNTTC	5 cut(s)	852, 1081, 1578, 1899, 2300
MscI	TGGCCA	1 cut(s)	2797
MslI	CAYNNNNRTG	3 cut(s)	164, 243, 2619
Msp20I	TGGCCA	1 cut(s)	2797
MspA1I	CMGCKG	3 cut(s)	77, 260, 2090
MspI	CCGG	4 cut(s)	1286, 1370, 1409, 1512
MspR9I	CCNGG	3 cut(s)	1371, 1409, 1513
MunI	CAATTG	2 cut(s)	1339, 2271
Mva1269I	GAATGC	1 cut(s)	1057
NciI	CCSGG	3 cut(s)	1371, 1409, 1513
NdeI	CATATG	2 cut(s)	732, 1558
NlaIV	GGNNCC	4 cut(s)	1357, 1820, 2386, 2647
NmuCI	GTSAC	2 cut(s)	1507, 2029
NsiI	ATGCAT	2 cut(s)	1591, 1792
NspI	RCATGY	1 cut(s)	2624
PaeR7I	CTCGAG	1 cut(s)	614
PagI	TCATGA	2 cut(s)	2278, 2761
PciSI	GCTCTTC	1 cut(s)	1258
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	1057
PdmI	GAANNNNTTC	5 cut(s)	852, 1081, 1578, 1899, 2300
PfeI	GAWTC	6 cut(s)	7, 585, 848, 1579, 2189, 2639
PflMI	CCANNNNNTGG	2 cut(s)	1365, 1398
PfoI	TCCNGGA	1 cut(s)	1407
PkrI	GCNGC	8 cut(s)	67, 76, 259, 1015, 1540, 1604, 1806, 2269
PleI	GAGTC	6 cut(s)	485, 725, 881, 1384, 1738, 2811
PpsI	GAGTC	6 cut(s)	485, 725, 881, 1384, 1738, 2811
Ppu21I	YACGTR	3 cut(s)	562, 1617, 1705
PshAI	GACNNNNGTC	2 cut(s)	212, 716
PshBI	ATTAAT	1 cut(s)	1890
PsiI	TTATAA	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	1140
PspN4I	GGNNCC	4 cut(s)	1357, 1820, 2386, 2647
PspPI	GGNCC	6 cut(s)	353, 1355, 1546, 1819, 1907, 2339
PspXI	VCTCGAGB	1 cut(s)	614
PstI	CTGCAG	1 cut(s)	1543
PstNI	CAGNNNCTG	2 cut(s)	1733, 2840
PsuI	RGATCY	6 cut(s)	316, 1064, 1102, 1404, 2210, 2682
PvuII	CAGCTG	3 cut(s)	77, 260, 2090
RsaI	GTAC	6 cut(s)	575, 1420, 1703, 1752, 2609, 2752
RsaNI	GTAC	6 cut(s)	574, 1419, 1702, 1751, 2608, 2751
RseI	CAYNNNNRTG	3 cut(s)	164, 243, 2619
SacI	GAGCTC	1 cut(s)	464
SalI	GTCGAC	1 cut(s)	2727
SapI	GCTCTTC	1 cut(s)	1258
SatI	GCNGC	8 cut(s)	66, 75, 258, 1014, 1539, 1603, 1805, 2268
Sau96I	GGNCC	6 cut(s)	353, 1355, 1546, 1819, 1907, 2339
SchI	GAGTC	6 cut(s)	485, 726, 882, 1385, 1739, 2812
ScrFI	CCNGG	3 cut(s)	1371, 1409, 1513
SduI	GDGCHC	1 cut(s)	464
SfcI	CTRYAG	2 cut(s)	1098, 1539
Sfr274I	CTCGAG	1 cut(s)	614
SinI	GGWCC	5 cut(s)	353, 1355, 1546, 1907, 2339
SlaI	CTCGAG	1 cut(s)	614
SmiI	ATTTAAAT	1 cut(s)	2103
SmiMI	CAYNNNNRTG	3 cut(s)	164, 243, 2619
SmlI	CTYRAG	3 cut(s)	614, 2198, 2528
SmoI	CTYRAG	3 cut(s)	614, 2198, 2528
SnaBI	TACGTA	1 cut(s)	562
SsiI	CCGC	2 cut(s)	66, 1013
SspI	AATATT	2 cut(s)	2315, 2346
SspMI	CTAG	5 cut(s)	210, 350, 714, 2054, 2511
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	1369, 1407, 1511
StyI	CCWWGG	3 cut(s)	349, 765, 1645
SwaI	ATTTAAAT	1 cut(s)	2103
TaaI	ACNGT	6 cut(s)	1319, 2071, 2486, 2741, 2836, 2902
TaiI	ACGT	5 cut(s)	108, 564, 1143, 1619, 1707
TaqI	TCGA	9 cut(s)	615, 640, 978, 1220, 1656, 2651, 2679, 2728, 2755
TauI	GCSGC	2 cut(s)	68, 1016
TfiI	GAWTC	6 cut(s)	7, 585, 848, 1579, 2189, 2639
TscAI	CASTG	6 cut(s)	105, 1449, 1507, 1548, 1612, 2521
TseFI	GTSAC	2 cut(s)	1507, 2029
TseI	GCWGC	6 cut(s)	74, 257, 1538, 1602, 1804, 2267
Tsp45I	GTSAC	2 cut(s)	1507, 2029
TspGWI	ACGGA	1 cut(s)	1375
TspRI	CASTG	6 cut(s)	105, 1449, 1507, 1548, 1612, 2521
Van91I	CCANNNNNTGG	2 cut(s)	1365, 1398
VpaK11BI	GGWCC	5 cut(s)	353, 1355, 1546, 1907, 2339
VspI	ATTAAT	1 cut(s)	1890
XapI	RAATTY	5 cut(s)	859, 1306, 1463, 1483, 2422
XceI	RCATGY	1 cut(s)	2624
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2790, 2881
XhoI	CTCGAG	1 cut(s)	614
XmaJI	CCTAGG	1 cut(s)	349
XmiI	GTMKAC	5 cut(s)	120, 564, 1641, 2327, 2728
XmnI	GAANNNNTTC	5 cut(s)	852, 1081, 1578, 1899, 2300
XspI	CTAG	5 cut(s)	210, 350, 714, 2054, 2511
Zsp2I	ATGCAT	2 cut(s)	1591, 1792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.