Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

5865587 .. 5870767

Gene Structure 5181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2886 bp

ATGATGAAGATGATCAAGAATATTCATACCATCTCTCTTTCTTATTCTCTCTTTTTAGTCTTCTCTAGTATTTTCGCGGCCGTGGCGGCACAGAATAATCAGGTGAATGTGGAAGTCGGGGTGGTTCTTGATTTCGATACGGGGTTTGGGAAGATGGGGCTGAGCTGCATCAAAATGTCTCTCTCTGACTTCTATGCCTCTCATCCCAATTACACCACCAGGCTGCTTCTGCACCAGAGGAACTCACCCACAGACGTTGTTCTTACAGCTGCTGCAGCTCTGGACCTAATAAATAATGTTGAAGTGCAAGCCATCATAGGCCCAGAGTCTTCAATGCAGGCCAACTTTGTAATAAGCCTCGGAAACAAAGCCCATGTCCCTATAATCTCATTTTCCGCCACAAGCCCAGCTCTCACTTCAATCCGCTCCCCGTACTTCATCCGCGCCGCTCAAAACGACTCGTCACAGGTCAAAGCCATAAGTGCCCTAATCCAAGCTTTCGGTTGGCGACAAGTCGTCCCCATCTACGTAGACAACGAGTTCGGCGAGGGGGTCATCCCCTACCTCTCCGATGCTCTACAACAAGTCGACGTCCGAATCCCTTACCGGGCCGTACTTTCGTCAAGGGCCGACGATGACCAAATCGAAACGGAGCTTTTGAAATTGATGGCCATGCAGACAAGGGTCTTCATCGTCCACATGTTGCCTGAACTAGGTACTAGGGTTTTCGAGAGGGCTAAGGAGATTGGGATGATGGATGAAGGTTATGTTTGGATAATGACTGATGGAATGTTCAACATGTTTAGCTATATTAGTTCCTCTTCCGTGGTGGAAAATATGCAAGGGGTTTTGGGTTTGAAACCTTATGTGCCAAGTACAACTGAGCTCGAGGATTTTAGGGTTAGGTGGAAGAGGAAGTTCCAGCAAGACAATCCAGGGGTTGATGATGTGGATTTGGAGGTGTTTGGACTTTGGGCTCATGATGCTTCCAAGGCATTGGCCATGGCAGTTGAGGAGGTTGTGACGAGTAGTAATGAAAGCTTCGGCTTTCAGAAGGTGAATTCTTCTGGTAGTTCTAATGATTTGGAGAGGATTGGAGTGTCGGAAATTGGTCTTCGACTAGTGGAAGCACTGTCAAGGACTAATTTCATAGGGCTTTCAGGGAGTTTTAGCCTCCTAAATGGGCAGCTACAATCATCAACTCTTCAGATTGTTAATGTGATTGGTAAAGGAGAGAAGGTGGTAGGGTATTGGACACCCGAAAATGGACTTGTGAGAAGCTTGAATTCCAAAACCACTATGAACAGCTCATACTCCACCTCGAATACTAGTCTTGGGTCTATTATATGGCCTGGAGACTCCATCTCTGCCCCAAAAGGTTGGCAGATTCCTACAAGTGGGAAGAAGTTGAAGATTTTAGTTCCAATTAAGAGTGGGTTCAAGGAGTTTGTGAATGTCACACATGATTCGAGCAGTAACACAAACAAGGTGGGTGGATACTGCATAGATGTCTTCGAAGCTGTAAAAAAGGCATTACCTTATGATATAGAGTATGAGTATTACCCTTTTGCAAAGCCTGATGGTGCGCGTGCTGGTAATTACAATGATTTGGTCAATGAAGTGTTTCTTGGGAAATATGATGCTGCTGTGGGAGATCTAACCATTCGAGCAAACCGGTCCTTGTATATTGATTTTACATTACCATTCACAGAATCTGGGGTATCCATGATTGTGCCCATAAAAGATAACAAAAATAAAAATGCATGGGTGTTCTTGAAGCCTTTGACTTGGGACCTTTGGGTAACAAGTGGTTGTTTTTTCATATTCATTGGTTTTGTGGTATGGGTTCTAGAACATCGGATCAACGAAGACTTCCGAGGGCCTCCACTTCACCAGATTGGCACAAGCTTTTGGTTCTCCTTCTCAACCATGGTTTTCGCACACAGGGAAAGAGTAGTGAGCAACTTGGCTAGGTTTGTAGTGATCATATGGTGTTTCGTCGTCCTCATATTGACTCAAAGTTACACCGCCAGTTTAACATCACTATTAACAGTTCAACAGCTCCAACCAACTGTTACTGACGTAAACTTGCTTCTGAAGAATGGGGACAATGTTGGCTACCAATCAGGTTCGTTTGTTTATGGGATTTTGAAACAGCTAGGATTTCAGGATAATAAGCTCAGGACCTATGATACTGTTGAACAGTTGAACGAACTTTTTCATAACGGGACTGCAAATAATGGGATAGCGGCTGCATTCGACGAGACCCCCTATATGAAATTGTTTCTTGCAACTTATTGCTCGAAATACACCATGGTTGAGCCAACGTTCAAAGCTGATGGTTTTGCCTTTGTCTTCCCAAAAGACTCACCTCTTGCTCGCGATGTTTCAAGGGCAATCTTAAATGTGAATGAGGGAGGTGAAATGGACAAGATTGAGGATAGATGGTTCAAAAAACAACAGATTTGTCAAAAGACTCAAAACACAAGCAACAACAATGTCTCGTCCAACAGTCTTAGCCTCGAGAGTTTTTGGGGCCTCTTCCTCATTGCCGGGGTTGCTTCATCACTGGCTCTCCTCATATTTGTTGCCATGTTCTTGTATGAACACAAGGACATTCGCTTGGATTCAGAATCTTCATTTTGGAGAAAAGTTCTTGTCATGTTAAGAATTTATGACCAAAAAGACCTCAGCAGCCATACTTTTAAGAAGAGTGGACTGGAATTTCACACCAACTATCCCTCGAGTCCATCAAGCTATTCAAACCACACTGAAGCGCACAATGTGTTTTCGGAGCAGTCAACATCTTCTCCTGAGCATGGTGATTTGAGTCCCACTAATGGTCAATCAACCAGAGAGATTGAATTAGCTATTGAGCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

961

Amino Acids

107.18

Weight (kDa)

5.67

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	37 - 316	2.7e-14	Periplasmic binding protein
ANF_receptor	PF01094	56 - 409	3.6e-82	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	483 - 579	2.4e-13	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	493 - 818	3e-11	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	596 - 854	4.3e-39	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	594
AccBSI	CCGCTC	2 cut(s)	426, 449
AccI	GTMKAC	2 cut(s)	531, 588
AccII	CGCG	4 cut(s)	77, 444, 1588, 2382
AciI	CCGC	8 cut(s)	77, 86, 396, 424, 442, 447, 2028, 2249
AclI	AACGTT	1 cut(s)	2327
AclWI	GGATC	1 cut(s)	1868
AcoI	YGGCCR	3 cut(s)	78, 669, 999
AcsI	RAATTY	4 cut(s)	1060, 1285, 2670, 2723
AcuI	CTGAAG	3 cut(s)	1190, 2117, 2793
AcyI	GRCGYC	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	2785
AfaI	GTAC	4 cut(s)	434, 615, 718, 877
AfiI	CCNNNNNNNGG	6 cut(s)	607, 713, 1265, 1397, 2819, 2840
AflIII	ACRYGT	2 cut(s)	699, 798
AgeI	ACCGGT	1 cut(s)	1674
AhdI	GACNNNNNGTC	1 cut(s)	515
AhlI	ACTAGT	2 cut(s)	1120, 1328
AjnI	CCWGG	3 cut(s)	218, 934, 1351
AjuI	GAANNNNNNNTTGG	2 cut(s)	1611, 1643
AloI	GAACNNNNNNTCC	2 cut(s)	2432, 2464
Alw21I	GWGCWC	1 cut(s)	888
Alw26I	GTCTC	4 cut(s)	183, 1350, 2258, 2506
AlwI	GGATC	1 cut(s)	1868
AlwNI	CAGNNNCTG	2 cut(s)	272, 1715
Ama87I	CYCGRG	3 cut(s)	887, 2522, 2743
ApeKI	GCWGC	9 cut(s)	165, 223, 269, 272, 275, 1186, 1643, 2252, 2694
ApoI	RAATTY	4 cut(s)	1060, 1285, 2670, 2723
ArsI	GACNNNNNNTTYG	4 cut(s)	360, 392, 524, 556
AsiGI	ACCGGT	1 cut(s)	1674
Asp700I	GAANNNNTTC	2 cut(s)	1623, 2217
AspLEI	GCGC	3 cut(s)	446, 1588, 2779
AspS9I	GGNCC	9 cut(s)	283, 320, 609, 627, 1677, 1792, 1880, 2184, 2536
AsuC2I	CCSGG	2 cut(s)	608, 2554
AsuHPI	GGTGA	7 cut(s)	115, 237, 1069, 1883, 2361, 2432, 2834
AsuII	TTCGAA	1 cut(s)	1515
AvaI	CYCGRG	3 cut(s)	887, 2522, 2743
AvaII	GGWCC	4 cut(s)	283, 1677, 1792, 2184
BaeGI	GKGCMC	2 cut(s)	487, 1737
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BalI	TGGCCA	2 cut(s)	671, 1001
BanII	GRGCYC	2 cut(s)	888, 979
BarI	GAAGNNNNNNTAC	2 cut(s)	2076, 2108
BbsI	GAAGAC	7 cut(s)	52, 321, 679, 1106, 1504, 1875, 2347
Bbv12I	GWGCWC	1 cut(s)	888
BbvCI	CCTCAGC	1 cut(s)	2690
BbvI	GCAGC	9 cut(s)	152, 210, 256, 259, 287, 1198, 1630, 2239, 2706
BceAI	ACGGC	2 cut(s)	65, 596
BciT130I	CCWGG	3 cut(s)	220, 936, 1353
BciVI	GTATCC	2 cut(s)	1490, 1732
BclI	TGATCA	2 cut(s)	12, 1983
BcnI	CCSGG	2 cut(s)	608, 2554
BcoDI	GTCTC	4 cut(s)	183, 1350, 2258, 2506
BcuI	ACTAGT	2 cut(s)	1120, 1328
BfaI	CTAG	8 cut(s)	66, 713, 720, 1121, 1329, 1850, 1971, 2159
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	2 cut(s)	1490, 1732
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	1654
BlpI	GCTNAGC	1 cut(s)	161
Bme1390I	CCNGG	5 cut(s)	220, 608, 936, 1353, 2554
Bme18I	GGWCC	4 cut(s)	283, 1677, 1792, 2184
BmeRI	GACNNNNNGTC	1 cut(s)	515
BmeT110I	CYCGRG	3 cut(s)	887, 2522, 2743
BmgT120I	GGNCC	9 cut(s)	283, 320, 609, 627, 1677, 1792, 1880, 2184, 2536
BmiI	GGNNCC	2 cut(s)	1793, 2537
BmrFI	CCNGG	5 cut(s)	220, 608, 936, 1353, 2554
BmsI	GCATC	4 cut(s)	177, 562, 973, 1630
BoxI	GACNNNNGTC	1 cut(s)	683
BpiI	GAAGAC	7 cut(s)	52, 321, 679, 1106, 1504, 1875, 2347
BpmI	CTGGAG	1 cut(s)	1374
Bpu10I	CCTNAGC	4 cut(s)	738, 2180, 2690, 2814
Bpu1102I	GCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	1515
BpuMI	CCSGG	2 cut(s)	608, 2554
BsaAI	YACGTR	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	2258
BsaWI	WCCGGW	1 cut(s)	1674
BsaXI	ACNNNNNCTCC	6 cut(s)	1224, 1254, 2559, 2589, 2794, 2824
Bsc4I	CCNNNNNNNGG	6 cut(s)	607, 713, 1265, 1397, 2819, 2840
Bse118I	RCCGGY	1 cut(s)	1674
Bse1I	ACTGG	3 cut(s)	2031, 2574, 2724
Bse3DI	GCAATG	1 cut(s)	2547
BseBI	CCWGG	3 cut(s)	220, 936, 1353
BseGI	GGATG	6 cut(s)	202, 438, 555, 756, 763, 2878
BseLI	CCNNNNNNNGG	6 cut(s)	607, 713, 1265, 1397, 2819, 2840
BseMI	GCAATG	1 cut(s)	2547
BseMII	CTCAG	5 cut(s)	152, 873, 2194, 2704, 2805
BseNI	ACTGG	3 cut(s)	2031, 2574, 2724
BseRI	GAGGAG	2 cut(s)	1028, 2567
BseSI	GKGCMC	2 cut(s)	487, 1737
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	9 cut(s)	152, 210, 256, 259, 287, 1198, 1630, 2239, 2706
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	4 cut(s)	77, 444, 1588, 2382
Bsh1285I	CGRYCG	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	1674
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	888
BsiHKCI	CYCGRG	3 cut(s)	887, 2522, 2743
BsiSI	CCGG	3 cut(s)	607, 1675, 2553
BslFI	GGGAC	6 cut(s)	362, 503, 1805, 2120, 2242, 2817
BslI	CCNNNNNNNGG	6 cut(s)	607, 713, 1265, 1397, 2819, 2840
BsmAI	GTCTC	4 cut(s)	183, 1350, 2258, 2506
BsmFI	GGGAC	6 cut(s)	362, 503, 1805, 2120, 2242, 2817
BsmI	GAATGC	1 cut(s)	2255
Bso31I	GGTCTC	1 cut(s)	2258
BsoBI	CYCGRG	3 cut(s)	887, 2522, 2743
Bsp119I	TTCGAA	1 cut(s)	1515
Bsp1286I	GDGCHC	4 cut(s)	487, 888, 979, 1737
Bsp143I	GATC	4 cut(s)	12, 1654, 1860, 1983
Bsp1720I	GCTNAGC	1 cut(s)	161
Bsp19I	CCATGG	3 cut(s)	1002, 1929, 2313
Bsp68I	TCGCGA	1 cut(s)	2382
BspACI	CCGC	8 cut(s)	77, 86, 396, 424, 442, 447, 2028, 2249
BspCNI	CTCAG	5 cut(s)	153, 874, 2193, 2703, 2806
BspFNI	CGCG	4 cut(s)	77, 444, 1588, 2382
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	2 cut(s)	1793, 2537
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	1868
BspT104I	TTCGAA	1 cut(s)	1515
BspTNI	GGTCTC	1 cut(s)	2258
BsrBI	CCGCTC	2 cut(s)	426, 449
BsrDI	GCAATG	1 cut(s)	2547
BsrFI	RCCGGY	1 cut(s)	1674
BsrI	ACTGG	3 cut(s)	2031, 2574, 2724
BssAI	RCCGGY	1 cut(s)	1674
BssMI	GATC	4 cut(s)	12, 1654, 1860, 1983
BssNI	GRCGYC	1 cut(s)	591
BssT1I	CCWWGG	4 cut(s)	990, 1002, 1929, 2313
Bst2UI	CCWGG	3 cut(s)	220, 936, 1353
Bst4CI	ACNGT	6 cut(s)	1134, 2053, 2074, 2197, 2205, 2513
Bst6I	CTCTTC	5 cut(s)	826, 905, 1209, 2546, 2705
BstACI	GRCGYC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	529
BstBI	TTCGAA	1 cut(s)	1515
BstC8I	GCNNGC	4 cut(s)	309, 339, 1590, 2380
BstDEI	CTNAG	8 cut(s)	161, 738, 882, 2180, 2516, 2690, 2814, 2883
BstDSI	CCRYGG	5 cut(s)	81, 825, 1002, 1929, 2313
BstENI	CCTNNNNNAGG	1 cut(s)	711
BstF5I	GGATG	6 cut(s)	202, 438, 555, 756, 763, 2878
BstFNI	CGCG	4 cut(s)	77, 444, 1588, 2382
BstHHI	GCGC	3 cut(s)	446, 1588, 2779
BstKTI	GATC	4 cut(s)	15, 1657, 1863, 1986
BstMAI	GTCTC	4 cut(s)	183, 1350, 2258, 2506
BstMBI	GATC	4 cut(s)	12, 1654, 1860, 1983
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 86, 229, 275, 482, 983, 992, 2558
BstNI	CCWGG	3 cut(s)	220, 936, 1353
BstNSI	RCATGY	2 cut(s)	703, 802
BstPAI	GACNNNNGTC	1 cut(s)	683
BstSCI	CCNGG	5 cut(s)	218, 606, 934, 1351, 2552
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	2 cut(s)	487, 1737
BstSNI	TACGTA	1 cut(s)	529
BstUI	CGCG	4 cut(s)	77, 444, 1588, 2382
BstV1I	GCAGC	9 cut(s)	152, 210, 256, 259, 287, 1198, 1630, 2239, 2706
BstV2I	GAAGAC	7 cut(s)	52, 321, 679, 1106, 1504, 1875, 2347
BstX2I	RGATCY	1 cut(s)	1654
BstXI	CCANNNNNNTGG	2 cut(s)	997, 1380
BstYI	RGATCY	1 cut(s)	1654
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	2 cut(s)	1490, 1732
BtgI	CCRYGG	5 cut(s)	81, 825, 1002, 1929, 2313
BtgZI	GCGATG	1 cut(s)	2397
BtsCI	GGATG	6 cut(s)	202, 438, 555, 756, 763, 2878
BtsIMutI	CAGTG	3 cut(s)	1130, 2567, 2769
BtuMI	TCGCGA	1 cut(s)	2382
Cac8I	GCNNGC	4 cut(s)	309, 339, 1590, 2380
CaiI	CAGNNNCTG	2 cut(s)	272, 1715
CciI	TCATGA	1 cut(s)	979
CfoI	GCGC	3 cut(s)	446, 1588, 2779
Cfr10I	RCCGGY	1 cut(s)	1674
Cfr13I	GGNCC	9 cut(s)	283, 320, 609, 627, 1677, 1792, 1880, 2184, 2536
Csp6I	GTAC	4 cut(s)	433, 614, 717, 876
CspAI	ACCGGT	1 cut(s)	1674
CspCI	CAANNNNNGTGG	6 cut(s)	238, 273, 1470, 1474, 1505, 1509
CviQI	GTAC	4 cut(s)	433, 614, 717, 876
DdeI	CTNAG	8 cut(s)	161, 738, 882, 2180, 2516, 2690, 2814, 2883
DpnI	GATC	4 cut(s)	14, 1656, 1862, 1985
DpnII	GATC	4 cut(s)	12, 1654, 1860, 1983
DraIII	CACNNNGTG	1 cut(s)	2785
DriI	GACNNNNNGTC	1 cut(s)	515
EaeI	YGGCCR	3 cut(s)	78, 669, 999
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	5 cut(s)	826, 905, 1209, 2546, 2705
Eam1105I	GACNNNNNGTC	1 cut(s)	515
EarI	CTCTTC	5 cut(s)	826, 905, 1209, 2546, 2705
EciI	GGCGGA	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	886
EclXI	CGGCCG	1 cut(s)	78
Eco105I	TACGTA	1 cut(s)	529
Eco130I	CCWWGG	4 cut(s)	990, 1002, 1929, 2313
Eco24I	GRGCYC	2 cut(s)	888, 979
Eco31I	GGTCTC	1 cut(s)	2258
Eco47I	GGWCC	4 cut(s)	283, 1677, 1792, 2184
Eco52I	CGGCCG	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	886
Eco57I	CTGAAG	3 cut(s)	1190, 2117, 2793
Eco88I	CYCGRG	3 cut(s)	887, 2522, 2743
EcoICRI	GAGCTC	1 cut(s)	886
EcoNI	CCTNNNNNAGG	1 cut(s)	711
EcoO109I	RGGNCCY	4 cut(s)	1792, 1880, 2184, 2536
EcoRI	GAATTC	2 cut(s)	1060, 1285
EcoRII	CCWGG	3 cut(s)	218, 934, 1351
EcoT14I	CCWWGG	4 cut(s)	990, 1002, 1929, 2313
EcoT22I	ATGCAT	1 cut(s)	1765
EcoT38I	GRGCYC	2 cut(s)	888, 979
ErhI	CCWWGG	4 cut(s)	990, 1002, 1929, 2313
FalI	AAGNNNNNCTT	2 cut(s)	1611, 1643
FaqI	GGGAC	6 cut(s)	362, 503, 1805, 2120, 2242, 2817
FauNDI	CATATG	1 cut(s)	1988
FbaI	TGATCA	2 cut(s)	12, 1983
FblI	GTMKAC	2 cut(s)	531, 588
FokI	GGATG	6 cut(s)	189, 425, 542, 763, 770, 2865
FriOI	GRGCYC	2 cut(s)	888, 979
FspBI	CTAG	8 cut(s)	66, 713, 720, 1121, 1329, 1850, 1971, 2159
GlaI	GCGC	3 cut(s)	445, 1587, 2778
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	1374
HapII	CCGG	3 cut(s)	607, 1675, 2553
HhaI	GCGC	3 cut(s)	446, 1588, 2779
Hin1I	GRCGYC	1 cut(s)	591
Hin6I	GCGC	3 cut(s)	444, 1586, 2777
HinP1I	GCGC	3 cut(s)	444, 1586, 2777
HincII	GTYRAC	2 cut(s)	589, 2802
HindII	GTYRAC	2 cut(s)	589, 2802
HindIII	AAGCTT	4 cut(s)	495, 1039, 1279, 1906
HpaII	CCGG	3 cut(s)	607, 1675, 2553
HphI	GGTGA	7 cut(s)	115, 237, 1069, 1883, 2361, 2432, 2834
Hpy166II	GTNNAC	6 cut(s)	532, 589, 697, 2086, 2717, 2802
Hpy8I	GTNNAC	6 cut(s)	532, 589, 697, 2086, 2717, 2802
Hpy99I	CGWCG	4 cut(s)	593, 635, 2003, 2264
HpyAV	CCTTC	4 cut(s)	755, 1048, 1231, 1930
HpyCH4III	ACNGT	6 cut(s)	1134, 2053, 2074, 2197, 2205, 2513
HpyCH4IV	ACGT	5 cut(s)	255, 528, 591, 2082, 2327
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 86, 229, 275, 482, 983, 992, 2558
HpyF3I	CTNAG	8 cut(s)	161, 738, 882, 2180, 2516, 2690, 2814, 2883
HpySE526I	ACGT	5 cut(s)	255, 528, 591, 2082, 2327
Hsp92I	GRCGYC	1 cut(s)	591
HspAI	GCGC	3 cut(s)	444, 1586, 2777
Ksp22I	TGATCA	2 cut(s)	12, 1983
Kzo9I	GATC	4 cut(s)	12, 1654, 1860, 1983
LmnI	GCTCC	4 cut(s)	431, 652, 2067, 2794
Lsp1109I	GCAGC	9 cut(s)	152, 210, 256, 259, 287, 1198, 1630, 2239, 2706
LweI	GCATC	4 cut(s)	177, 562, 973, 1630
MaeI	CTAG	8 cut(s)	66, 713, 720, 1121, 1329, 1850, 1971, 2159
MaeII	ACGT	5 cut(s)	255, 528, 591, 2082, 2327
MaeIII	GTNAC	7 cut(s)	462, 1021, 1456, 1475, 1801, 2021, 2074
MalI	GATC	4 cut(s)	14, 1656, 1862, 1985
MbiI	CCGCTC	2 cut(s)	426, 449
MboI	GATC	4 cut(s)	12, 1654, 1860, 1983
MflI	RGATCY	1 cut(s)	1654
MhlI	GDGCHC	4 cut(s)	487, 888, 979, 1737
MlsI	TGGCCA	2 cut(s)	671, 1001
MluNI	TGGCCA	2 cut(s)	671, 1001
MlyI	GAGTC	8 cut(s)	335, 452, 1352, 2008, 2360, 2470, 2755, 2839
MmeI	TCCRAC	3 cut(s)	1083, 2089, 2532
Mox20I	TGGCCA	2 cut(s)	671, 1001
Mph1103I	ATGCAT	1 cut(s)	1765
MroXI	GAANNNNTTC	2 cut(s)	1623, 2217
MscI	TGGCCA	2 cut(s)	671, 1001
MseI	TTAA	7 cut(s)	1215, 1428, 2036, 2048, 2402, 2666, 2706
MslI	CAYNNNNRTG	2 cut(s)	173, 1730
Msp20I	TGGCCA	2 cut(s)	671, 1001
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	607, 1675, 2553
MspR9I	CCNGG	5 cut(s)	220, 608, 936, 1353, 2554
Mva1269I	GAATGC	1 cut(s)	2255
MvaI	CCWGG	3 cut(s)	220, 936, 1353
MvnI	CGCG	4 cut(s)	77, 444, 1588, 2382
MwoI	GCNNNNNNNGC	8 cut(s)	83, 86, 229, 275, 482, 983, 992, 2558
NciI	CCSGG	2 cut(s)	608, 2554
NcoI	CCATGG	3 cut(s)	1002, 1929, 2313
NdeI	CATATG	1 cut(s)	1988
NdeII	GATC	4 cut(s)	12, 1654, 1860, 1983
NlaIV	GGNNCC	2 cut(s)	1793, 2537
NmuCI	GTSAC	3 cut(s)	462, 1021, 1456
NruI	TCGCGA	1 cut(s)	2382
NsiI	ATGCAT	1 cut(s)	1765
NspI	RCATGY	2 cut(s)	703, 802
NspV	TTCGAA	1 cut(s)	1515
PaeR7I	CTCGAG	3 cut(s)	887, 2522, 2743
PagI	TCATGA	1 cut(s)	979
PciI	ACATGT	2 cut(s)	699, 798
PcsI	WCGNNNNNNNCGW	2 cut(s)	534, 543
PctI	GAATGC	1 cut(s)	2255
PdmI	GAANNNNTTC	2 cut(s)	1623, 2217
PfeI	GAWTC	6 cut(s)	597, 1387, 1466, 1712, 2627, 2633
PinAI	ACCGGT	1 cut(s)	1674
PleI	GAGTC	8 cut(s)	334, 452, 1352, 2008, 2360, 2470, 2754, 2838
PpsI	GAGTC	8 cut(s)	334, 452, 1352, 2008, 2360, 2470, 2754, 2838
Ppu21I	YACGTR	1 cut(s)	529
PpuMI	RGGWCCY	2 cut(s)	1792, 2184
PscI	ACATGT	2 cut(s)	699, 798
PshAI	GACNNNNGTC	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	888
Psp1406I	AACGTT	1 cut(s)	2327
Psp5II	RGGWCCY	2 cut(s)	1792, 2184
Psp6I	CCWGG	3 cut(s)	218, 934, 1351
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	3 cut(s)	218, 934, 1351
PspN4I	GGNNCC	2 cut(s)	1793, 2537
PspPI	GGNCC	9 cut(s)	283, 320, 609, 627, 1677, 1792, 1880, 2184, 2536
PspPPI	RGGWCCY	2 cut(s)	1792, 2184
PspXI	VCTCGAGB	2 cut(s)	887, 2743
PsrI	GAACNNNNNNTAC	2 cut(s)	1295, 1327
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	2 cut(s)	272, 1715
PsuI	RGATCY	1 cut(s)	1654
PvuII	CAGCTG	1 cut(s)	269
RruI	TCGCGA	1 cut(s)	2382
RsaI	GTAC	4 cut(s)	434, 615, 718, 877
RsaNI	GTAC	4 cut(s)	433, 614, 717, 876
RseI	CAYNNNNRTG	2 cut(s)	173, 1730
SacI	GAGCTC	1 cut(s)	888
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	7 cut(s)	1215, 1428, 2036, 2048, 2402, 2666, 2706
Sau3AI	GATC	4 cut(s)	12, 1654, 1860, 1983
Sau96I	GGNCC	9 cut(s)	283, 320, 609, 627, 1677, 1792, 1880, 2184, 2536
SchI	GAGTC	8 cut(s)	335, 452, 1352, 2008, 2360, 2470, 2755, 2839
ScrFI	CCNGG	5 cut(s)	220, 608, 936, 1353, 2554
SduI	GDGCHC	4 cut(s)	487, 888, 979, 1737
SfaNI	GCATC	4 cut(s)	177, 562, 973, 1630
SfcI	CTRYAG	1 cut(s)	273
Sfr274I	CTCGAG	3 cut(s)	887, 2522, 2743
SfuI	TTCGAA	1 cut(s)	1515
SinI	GGWCC	4 cut(s)	283, 1677, 1792, 2184
SlaI	CTCGAG	3 cut(s)	887, 2522, 2743
SmiMI	CAYNNNNRTG	2 cut(s)	173, 1730
SmlI	CTYRAG	3 cut(s)	887, 2522, 2743
SmoI	CTYRAG	3 cut(s)	887, 2522, 2743
SnaBI	TACGTA	1 cut(s)	529
SpeI	ACTAGT	2 cut(s)	1120, 1328
SsiI	CCGC	8 cut(s)	77, 86, 396, 424, 442, 447, 2028, 2249
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	8 cut(s)	66, 713, 720, 1121, 1329, 1850, 1971, 2159
SstI	GAGCTC	1 cut(s)	888
StyD4I	CCNGG	5 cut(s)	218, 606, 934, 1351, 2552
StyI	CCWWGG	4 cut(s)	990, 1002, 1929, 2313
TaaI	ACNGT	6 cut(s)	1134, 2053, 2074, 2197, 2205, 2513
TaiI	ACGT	5 cut(s)	258, 531, 594, 2085, 2330
TatI	WGTACW	1 cut(s)	875
TauI	GCSGC	4 cut(s)	80, 89, 449, 2252
TfiI	GAWTC	6 cut(s)	597, 1387, 1466, 1712, 2627, 2633
Tru1I	TTAA	7 cut(s)	1215, 1428, 2036, 2048, 2402, 2666, 2706
Tru9I	TTAA	7 cut(s)	1215, 1428, 2036, 2048, 2402, 2666, 2706
TscAI	CASTG	3 cut(s)	1137, 2574, 2776
TseFI	GTSAC	3 cut(s)	462, 1021, 1456
TseI	GCWGC	9 cut(s)	165, 223, 269, 272, 275, 1186, 1643, 2252, 2694
Tsp45I	GTSAC	3 cut(s)	462, 1021, 1456
TspGWI	ACGGA	2 cut(s)	665, 814
TspRI	CASTG	3 cut(s)	1137, 2574, 2776
VpaK11BI	GGWCC	4 cut(s)	283, 1677, 1792, 2184
XagI	CCTNNNNNAGG	1 cut(s)	711
XapI	RAATTY	4 cut(s)	1060, 1285, 2670, 2723
XbaI	TCTAGA	1 cut(s)	1849
XceI	RCATGY	2 cut(s)	703, 802
XhoI	CTCGAG	3 cut(s)	887, 2522, 2743
XmiI	GTMKAC	2 cut(s)	531, 588
XmnI	GAANNNNTTC	2 cut(s)	1623, 2217
XspI	CTAG	8 cut(s)	66, 713, 720, 1121, 1329, 1850, 1971, 2159
ZraI	GACGTC	1 cut(s)	592
Zsp2I	ATGCAT	1 cut(s)	1765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.