MD08G1048500.v1.1

Glutamate receptor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
3752901 .. 3753482
582 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1048500.v1.1.491

Sequence Viewer

Length: 582 bp
ATGCAGGCGAGCTTCGTTGTTAATCTTGCAAACCAAGCTCATGTCCCAATTTTATCATTTTCTGCAACAAGCCTCTCTCTTACTTCTCTCCAAAGCCCTTACTTCTTCCGAATTACACAAAGCGACTTTCACCAAGTGAAAGCCATAAGAGACCTTGTCAAATATTATCGATGGAGACAAGTTGTGCCAATTTATGTAGACAATATGTACGGGGAGGGAATTATACCCTCTTTAATTGATGCACTACAAGAGGTGGATGCTCAGGTTCCCTATCGTACTGTGATTCCCCCATCAGCCACTGATGATCAAATTGGTAACGAGCTTCACAAGTTAATGACTAAGCAAACGAGAGTCTTCATTGTGCACATGATGCCTAATCTCTCCTCTAGACTATTTTCCAAGGCAAAAGAGATTGGAATGATGAGTGAAGGCTATGTTTGGATCATAACGAATGGGGTAGGAAATTGTTTATGGTCAATGAATCCTATCCTCCAAAATGCAATGCAAGGTGTATTAGGTGTGGAAACAGATGTTCCAAAAACAGTGGAGCTTAACAAATTCAAAATGCGGTGGAGAAGGTAA

Protein Analysis

194

Amino Acids

22.06

Weight (kDa)

9.24

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 2 - 191 1.7e-50 Receptor family ligand binding region
Peripla_BP_6 PF13458 6 - 179 2.5e-08 Periplasmic binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 568
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 557
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 209, 277
AgsI TTSAA 1 cut(s) 562
AluBI AGCT 4 cut(s) 12, 38, 322, 550
AluI AGCT 4 cut(s) 12, 38, 322, 550
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 144, 169
Alw44I GTGCAC 1 cut(s) 362
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 366
BccI CCATC 2 cut(s) 165, 298
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 144, 169
BfaI CTAG 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 267
BmsI GCATC 3 cut(s) 229, 247, 360
BpiI GAAGAC 1 cut(s) 346
Bpu10I CCTNAGC 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 507
BseCI ATCGAT 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 373
BseSI GKGCMC 1 cut(s) 366
BshVI ATCGAT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 366
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 144, 169
BsmFI GGGAC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 304, 441
BspACI CCGC 1 cut(s) 568
BspCNI CTCAG 1 cut(s) 274
BspDI ATCGAT 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 507
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 2 cut(s) 304, 441
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 280, 544
BstAPI GCANNNNNTGC 1 cut(s) 370
BstC8I GCNNGC 2 cut(s) 6, 10
BstDEI CTNAG 2 cut(s) 261, 339
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 2 cut(s) 307, 444
BstMAI GTCTC 2 cut(s) 144, 169
BstMBI GATC 2 cut(s) 304, 441
BstMWI GCNNNNNNNGC 2 cut(s) 35, 370
BstSLI GKGCMC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 346
Bsu15I ATCGAT 1 cut(s) 169
BsuTUI ATCGAT 1 cut(s) 169
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 297, 549
Cac8I GCNNGC 2 cut(s) 6, 10
CaiI CAGNNNCTG 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 169
Csp6I GTAC 2 cut(s) 208, 276
CspCI CAANNNNNGTGG 2 cut(s) 525, 560
CviAII CATG 2 cut(s) 41, 367
CviJI RGCY 9 cut(s) 12, 38, 72, 96, 143, 296, 322, 432, 550
CviKI_1 RGCY 9 cut(s) 12, 38, 72, 96, 143, 296, 322, 432, 550
CviQI GTAC 2 cut(s) 208, 276
DdeI CTNAG 2 cut(s) 261, 339
DpnI GATC 2 cut(s) 306, 443
DpnII GATC 2 cut(s) 304, 441
DraIII CACNNNGTG 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 2 cut(s) 44, 370
FaiI YATR 9 cut(s) 42, 146, 195, 206, 224, 368, 435, 446, 472
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 40, 366
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 198
FokI GGATG 1 cut(s) 269
FspBI CTAG 1 cut(s) 387
Hin1II CATG 2 cut(s) 44, 370
HinfI GANTC 3 cut(s) 283, 351, 481
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 199, 364
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 2 cut(s) 199, 364
HpyAV CCTTC 2 cut(s) 422, 570
HpyCH4III ACNGT 2 cut(s) 280, 544
HpyCH4V TGCA 7 cut(s) 4, 29, 65, 242, 364, 500, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 370
HpyF3I CTNAG 2 cut(s) 261, 339
Hsp92II CATG 2 cut(s) 44, 370
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 304, 441
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 1 cut(s) 248
LweI GCATC 3 cut(s) 229, 247, 360
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 306, 443
MboI GATC 2 cut(s) 304, 441
MboII GAAGA 2 cut(s) 97, 346
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 8 cut(s) 48, 111, 189, 219, 234, 309, 463, 557
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 6 cut(s) 83, 208, 238, 244, 394, 500
MseI TTAA 4 cut(s) 21, 233, 332, 552
MwoI GCNNNNNNNGC 2 cut(s) 35, 370
NdeII GATC 2 cut(s) 304, 441
NlaIII CATG 2 cut(s) 44, 370
NlaIV GGNNCC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 283, 481
PflFI GACNNNGTC 1 cut(s) 155
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 299
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 2 cut(s) 209, 277
RsaNI GTAC 2 cut(s) 208, 276
SaqAI TTAA 4 cut(s) 21, 233, 332, 552
Sau3AI GATC 2 cut(s) 304, 441
SchI GAGTC 1 cut(s) 360
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 3 cut(s) 229, 247, 360
Sse9I AATT 8 cut(s) 48, 111, 189, 219, 234, 309, 463, 557
SsiI CCGC 1 cut(s) 568
SspI AATATT 1 cut(s) 164
SspMI CTAG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 280, 544
TaqI TCGA 1 cut(s) 169
TasI AATT 8 cut(s) 48, 111, 189, 219, 234, 309, 463, 557
TfiI GAWTC 2 cut(s) 283, 481
Tru1I TTAA 4 cut(s) 21, 233, 332, 552
Tru9I TTAA 4 cut(s) 21, 233, 332, 552
TscAI CASTG 2 cut(s) 304, 549
TspDTI ATGAA 2 cut(s) 346, 494
TspRI CASTG 2 cut(s) 304, 549
Tth111I GACNNNGTC 1 cut(s) 155
VneI GTGCAC 1 cut(s) 362
XapI RAATTY 1 cut(s) 557
XbaI TCTAGA 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.