Rroxscaffold_7G00198600

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000051
Physical Location & Seq
Reverse (-)
44200860 .. 44205016
4157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198600.1

Sequence Viewer

Length: 2550 bp
ATGGAGATCAGGAAACTATCAAAACCTGTTTCTTTTTTGATTCTTTGTTCAAGTATTTCCCTGGTCATGGCAATGGGAGAGAACACAAGCATCTCAGTGAATGTGGGTGTTATTCTTGACCTTGATAATTCACTGAATACAAAAGTTTGGTTGAGCTGCATAAAGATGGCAATCTCAGACTTTTATGCTTCTCATGGTCCCTCTAAGACGAGACTGGTTTGGAACATTAAGGACTCCAGAAGTGAAGTTGTGGATGCCGCTGCAGCAGCTTTGGACCTGATAAAGAATGTTCAAGTGGAAGCAATAATAGGACCCAAATCTTCAATGCAAGCCAACTTTGTAATTGATCTTGGAGACAAAGCTCAGGTGCCCATAATCTCATTTTCAGCAACAAGTCCTTCCCTTACCTCCCTTCAAAGTTCGTATTTTTTCAGAGCTGCACAAAATGATTCCTCTCAAGTCAAAGCCATTAGTGCAATTATTAAAGCTTTTGGATGGAGAGTAGCTATACCCATCTATGTAGAAAATGCTTACGGCGAGGGGGTGCTACCATCCTTAGTGGATGCCTTGCAAGACGTTCGAGTCCGTGTCCCTTACAGAAGTGCCATACCTCCGACAGCCACAGATGACCAACTTGCCCAGGAACTATACAAGTTAATGACGATGCAAACAAGAGTCTTTATCGTGCATATGTCCCCCTCGATTGGGTCTCGGCTTTTCGCCAAAGCAGATGAGATAGGGATGATGAAGGAAGGCTACGTTTGGATCATGACCAATGGGTTAGCTAATCACTTGAGTTCAACAAATGCTTCAACCATCAATTCAATGCAAGGGGCACTAGGTTTGAGGACTTACGTACCAAAGACGGAAGAGCTTATTGATTTTAGAAGTCGTTGGAAAAGGCAGTTCCAACATGAAAATCCAACCATCATTGATGTTGAGTTGGATGTGTATGGACTCTGGGCTTATGATGCTGCTTACGCATTAGCCATGGCAGTTGAGAGTGTTGGCACTACCAGATCACTCTTTGGCTCCCAAACCACAAATGCTTCCATCAACTCATCAACAGATCTCGAAACTCTCAGGGTCTCTCCGAGCGGTCGTGAACTTTCTCACTCCTTGTCAAGTACTAGGTTCAGAGGCCTTGCGGGAGATTTCAGTTTCTTCAATGGGCAGTTGCAATCTTCGGTGTTTGAAATAGTGAATGTGAATGGTGACGGAGCAAGAGGAATTGGGTTTTGGTCACCACAGTGTGGACTTATGAAAGATATGAGCAAAAAAATAGATGCAAACAGTTCATACTCAACTTCTAAATCTGACATGGGACCGATAATATGGCCAGGAGATTCTACCTCAACTCCAAAGGGATGGGAACTTCCCACAAATAGCAAAAGGTTGAGAGTAGGCGTTCCTGTGAAAGTTGGTTCTCCTGAGTTTGTGAAGGTGGTGCATGATCCTGTCACTAATAGAATAGATGTCACTGGGTTCTGTATTGACATGTTCAATGCTGTAATGGAAGGGTTACCGTACGCTGTTACATATGATTTCATTCCCTTTGCAAAGCCAGATGGTACTAGTGCTGGCACTTACAATGACATGGTCCATCAAGTTTTTCTTGGGAATTTCGATGCTTTGGCCGCAGCTACAACAATTAGAGCAAACAGATCTCTGTATGTTGACTTCACATTGCCATACACAGATTCAGGTGTAGTAATGTTAGTGCCTATGAAAGACAGCAAGAGCCGCAATGCATGGATTTTTCTGAAGCCTTTGACATGGGACCTCTGGCTTACAAGTTCTTGCTCTTTCATCTTCATTGGTTTTGTGATTTGGGTTCTTGAACACCGGATTAATGACGATTTTCGTGGGCCTCCATCGCACCAAGTTGGCACAAGCATGTGGTTTTCTTTCTCAACGATGGTTTTTGCACAGCGAGAAAAGGTTGTTAGCAACTTGGGTAGGTCTGTGGTGATAGTGTGGGCATTTGTGGTGCTGATACTGACACAAAGTTACACAGCTAGTCTGACATCACTATTAACACTCAAGCAACTCCAGCCAACTTATACGGATATAAATGAGCTTTTAAAAAATAAGGAGTCTGTGGGATACCCGAAGGGTTCTTTTGTCCGTGATCTTTTGATAGAAAAAGGTTTTGATCGTTCTAGGATTAAGTCTTATACATCACCAGATGAATGTGACCAACTTTTGGAATACGGAAGCGCAAAAGGAGGTATTGCTGCTGCTATAGATGAAACGCCCAACTTGAAGCTTTTTCTTGCAAAGTACTGCACCAAATACACCATGGTTGGCCCAATTTTTAAAACCGATGGCTTTGCCTTTGTTTTCCCCAAAGGTTCGCCTCTCGTACCAGATGTTTCAAGGTCGATTTTGAACGTGACTGAGGGAGAGGAAATGAAGAACATCGAAAATAAATGGTTTGGAAAAAAGGCCACTTGTTCAGTTACCAACCCGATGCTCTCGGATTCCAGTAGCCTTGGGGTTGATAGTTTTGGGGTCTTTTCCTCATTGCCGGGTTCTCTTCATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

849

Amino Acids

93.41

Weight (kDa)

6.82

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 33 - 339 2.8e-19 Periplasmic binding protein
ANF_receptor PF01094 51 - 406 4.8e-89 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 484 - 575 1.8e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 492 - 815 6.2e-10 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 592 - 838 2.2e-32 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 367
AccB7I CCANNNNNTGG 2 cut(s) 1253, 2206
AccBSI CCGCTC 1 cut(s) 1098
AciI CCGC 5 cut(s) 258, 1098, 1148, 1638, 1744
AclWI GGATC 2 cut(s) 773, 1448
AcoI YGGCCR 2 cut(s) 1337, 1635
AcsI RAATTY 1 cut(s) 1621
AcuI CTGAAG 1 cut(s) 1784
AdeI CACNNNGTG 1 cut(s) 1253
AfaI GTAC 6 cut(s) 858, 1129, 1529, 1573, 2285, 2367
AfiI CCNNNNNNNGG 5 cut(s) 67, 704, 705, 1253, 2206
AflIII ACRYGT 1 cut(s) 1497
AhlI ACTAGT 1 cut(s) 1574
AjnI CCWGG 3 cut(s) 60, 639, 1339
AjuI GAANNNNNNNTTGG 2 cut(s) 1222, 1254
AleI CACNNNNGTG 1 cut(s) 1249
Alw26I GTCTC 4 cut(s) 205, 348, 714, 1093
AlwI GGATC 2 cut(s) 773, 1448
AoxI GGCC 6 cut(s) 1141, 1337, 1635, 1868, 2308, 2448
ApeKI GCWGC 9 cut(s) 156, 260, 263, 266, 437, 974, 1640, 2237, 2240
ApoI RAATTY 1 cut(s) 1621
AseI ATTAAT 1 cut(s) 1851
AspLEI GCGC 1 cut(s) 2222
AspS9I GGNCC 8 cut(s) 197, 274, 311, 1325, 1600, 1780, 1868, 2309
AsuC2I CCSGG 1 cut(s) 2532
AsuHPI GGTGA 4 cut(s) 1226, 1236, 1981, 2175
AvaII GGWCC 6 cut(s) 197, 274, 311, 1325, 1600, 1780
BaeGI GKGCMC 2 cut(s) 372, 838
BaeI ACNNNNGTAYC 2 cut(s) 840, 873
BalI TGGCCA 1 cut(s) 1339
BanI GGYRCC 1 cut(s) 367
BarI GAAGNNNNNNTAC 4 cut(s) 740, 772, 1664, 1696
BbvI GCAGC 9 cut(s) 143, 247, 275, 278, 424, 961, 1652, 2224, 2227
BceAI ACGGC 1 cut(s) 550
BcgI CGANNNNNNTGC 4 cut(s) 560, 594, 2315, 2349
BciT130I CCWGG 3 cut(s) 62, 641, 1341
BciVI GTATCC 1 cut(s) 2099
BcnI CCSGG 1 cut(s) 2532
BcoDI GTCTC 4 cut(s) 205, 348, 714, 1093
BcuI ACTAGT 1 cut(s) 1574
BfaI CTAG 5 cut(s) 839, 1131, 1575, 2019, 2163
BfmI CTRYAG 2 cut(s) 261, 2244
BfuI GTATCC 1 cut(s) 2099
BglII AGATCT 2 cut(s) 1069, 1664
BmcAI AGTACT 2 cut(s) 1129, 2285
Bme1390I CCNGG 4 cut(s) 62, 641, 1341, 2532
Bme18I GGWCC 6 cut(s) 197, 274, 311, 1325, 1600, 1780
BmgT120I GGNCC 8 cut(s) 197, 274, 311, 1325, 1600, 1780, 1868, 2309
BmiI GGNNCC 6 cut(s) 199, 313, 369, 1033, 1326, 1781
BmrFI CCNGG 4 cut(s) 62, 641, 1341, 2532
BmrI ACTGGG 1 cut(s) 1491
BmsI GCATC 8 cut(s) 99, 244, 553, 654, 961, 1276, 1618, 2463
BmuI ACTGGG 1 cut(s) 1491
BpmI CTGGAG 2 cut(s) 220, 2036
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 3 cut(s) 441, 814, 2027
BpuMI CCSGG 1 cut(s) 2532
BsaAI YACGTR 1 cut(s) 856
BsaBI GATNNNNATC 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 714, 1093
BsaJI CCNNGG 5 cut(s) 60, 639, 990, 2301, 2494
BsaWI WCCGGW 1 cut(s) 1845
BsaXI ACNNNNNCTCC 2 cut(s) 1342, 1372
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 704, 705, 1253, 2206
Bse1I ACTGG 3 cut(s) 219, 1486, 2487
Bse3DI GCAATG 4 cut(s) 78, 1685, 1753, 2525
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 3 cut(s) 62, 641, 1341
BseDI CCNNGG 5 cut(s) 60, 639, 990, 2301, 2494
BseGI GGATG 7 cut(s) 259, 500, 551, 568, 747, 952, 1373
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 5 cut(s) 67, 704, 705, 1253, 2206
BseMI GCAATG 4 cut(s) 78, 1685, 1753, 2525
BseMII CTCAG 6 cut(s) 108, 189, 377, 1096, 1422, 2391
BseNI ACTGG 3 cut(s) 219, 1486, 2487
BseSI GKGCMC 2 cut(s) 372, 838
BseXI GCAGC 9 cut(s) 143, 247, 275, 278, 424, 961, 1652, 2224, 2227
BsgI GTGCAG 2 cut(s) 423, 2272
Bsh1285I CGRYCG 1 cut(s) 1102
BshFI GGCC 6 cut(s) 1143, 1339, 1637, 1870, 2310, 2450
BshNI GGYRCC 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 1102
BsiSI CCGG 2 cut(s) 1846, 2531
BsiWI CGTACG 1 cut(s) 1527
BslFI GGGAC 5 cut(s) 183, 575, 679, 1338, 1793
BslI CCNNNNNNNGG 5 cut(s) 67, 704, 705, 1253, 2206
BsmAI GTCTC 4 cut(s) 205, 348, 714, 1093
BsmFI GGGAC 5 cut(s) 183, 575, 679, 1338, 1793
BsnI GGCC 6 cut(s) 1143, 1339, 1637, 1870, 2310, 2450
Bso31I GGTCTC 2 cut(s) 714, 1093
Bsp1286I GDGCHC 2 cut(s) 372, 838
Bsp143I GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
Bsp19I CCATGG 2 cut(s) 990, 2301
BspACI CCGC 5 cut(s) 258, 1098, 1148, 1638, 1744
BspANI GGCC 6 cut(s) 1143, 1339, 1637, 1870, 2310, 2450
BspCNI CTCAG 6 cut(s) 107, 188, 376, 1095, 1423, 2392
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 6 cut(s) 199, 313, 369, 1033, 1326, 1781
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 2 cut(s) 773, 1448
BspQI GCTCTTC 1 cut(s) 864
BspT107I GGYRCC 1 cut(s) 367
BspTNI GGTCTC 2 cut(s) 714, 1093
BsrBI CCGCTC 1 cut(s) 1098
BsrDI GCAATG 4 cut(s) 78, 1685, 1753, 2525
BsrI ACTGG 3 cut(s) 219, 1486, 2487
BssECI CCNNGG 5 cut(s) 60, 639, 990, 2301, 2494
BssMI GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
BssT1I CCWWGG 3 cut(s) 990, 2301, 2494
Bst2UI CCWGG 3 cut(s) 62, 641, 1341
Bst4CI ACNGT 3 cut(s) 1251, 1295, 1527
Bst6I CTCTTC 2 cut(s) 864, 2544
BstBAI YACGTR 1 cut(s) 856
BstC8I GCNNGC 2 cut(s) 330, 1582
BstDEI CTNAG 8 cut(s) 94, 175, 204, 363, 556, 1082, 1431, 2400
BstDSI CCRYGG 2 cut(s) 990, 2301
BstEII GGTNACC 2 cut(s) 1242, 1521
BstF5I GGATG 7 cut(s) 259, 500, 551, 568, 747, 952, 1373
BstHHI GCGC 1 cut(s) 2222
BstKTI GATC 9 cut(s) 9, 349, 768, 1022, 1072, 1456, 1667, 2134, 2158
BstMAI GTCTC 4 cut(s) 205, 348, 714, 1093
BstMBI GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
BstMCI CGRYCG 1 cut(s) 1102
BstMWI GCNNNNNNNGC 9 cut(s) 263, 266, 473, 971, 980, 1637, 1743, 1876, 2053
BstNI CCWGG 3 cut(s) 62, 641, 1341
BstNSI RCATGY 2 cut(s) 1501, 1900
BstPI GGTNACC 2 cut(s) 1242, 1521
BstSCI CCNGG 4 cut(s) 60, 639, 1339, 2530
BstSFI CTRYAG 2 cut(s) 261, 2244
BstSLI GKGCMC 2 cut(s) 372, 838
BstSNI TACGTA 1 cut(s) 856
BstV1I GCAGC 9 cut(s) 143, 247, 275, 278, 424, 961, 1652, 2224, 2227
BstX2I RGATCY 2 cut(s) 1069, 1664
BstXI CCANNNNNNTGG 1 cut(s) 1368
BstYI RGATCY 2 cut(s) 1069, 1664
BsuI GTATCC 1 cut(s) 2099
BsuRI GGCC 6 cut(s) 1143, 1339, 1637, 1870, 2310, 2450
BtgI CCRYGG 2 cut(s) 990, 2301
BtgZI GCGATG 1 cut(s) 1860
BtsCI GGATG 7 cut(s) 259, 500, 551, 568, 747, 952, 1373
BtsIMutI CAGTG 4 cut(s) 102, 131, 1256, 1479
Cac8I GCNNGC 2 cut(s) 330, 1582
CciI TCATGA 1 cut(s) 768
CfoI GCGC 1 cut(s) 2222
Cfr13I GGNCC 8 cut(s) 197, 274, 311, 1325, 1600, 1780, 1868, 2309
Csp6I GTAC 6 cut(s) 857, 1128, 1528, 1572, 2284, 2366
CviQI GTAC 6 cut(s) 857, 1128, 1528, 1572, 2284, 2366
DdeI CTNAG 8 cut(s) 94, 175, 204, 363, 556, 1082, 1431, 2400
DpnI GATC 9 cut(s) 8, 348, 767, 1021, 1071, 1455, 1666, 2133, 2157
DpnII GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
DraI TTTAAA 2 cut(s) 2085, 2320
DraIII CACNNNGTG 1 cut(s) 1253
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 2 cut(s) 1337, 1635
Eam1104I CTCTTC 2 cut(s) 864, 2544
EarI CTCTTC 2 cut(s) 864, 2544
Eco105I TACGTA 1 cut(s) 856
Eco130I CCWWGG 3 cut(s) 990, 2301, 2494
Eco147I AGGCCT 1 cut(s) 1143
Eco31I GGTCTC 2 cut(s) 714, 1093
Eco47I GGWCC 6 cut(s) 197, 274, 311, 1325, 1600, 1780
Eco57I CTGAAG 1 cut(s) 1784
Eco91I GGTNACC 2 cut(s) 1242, 1521
EcoO109I RGGNCCY 2 cut(s) 311, 1780
EcoO65I GGTNACC 2 cut(s) 1242, 1521
EcoRII CCWGG 3 cut(s) 60, 639, 1339
EcoT14I CCWWGG 3 cut(s) 990, 2301, 2494
EcoT22I ATGCAT 1 cut(s) 1753
ErhI CCWWGG 3 cut(s) 990, 2301, 2494
FalI AAGNNNNNCTT 2 cut(s) 1599, 1631
FaqI GGGAC 5 cut(s) 183, 575, 679, 1338, 1793
FauI CCCGC 1 cut(s) 1141
FauNDI CATATG 2 cut(s) 690, 1540
FokI GGATG 7 cut(s) 266, 507, 538, 575, 754, 959, 1380
FspBI CTAG 5 cut(s) 839, 1131, 1575, 2019, 2163
GlaI GCGC 1 cut(s) 2221
GsuI CTGGAG 2 cut(s) 220, 2036
HaeIII GGCC 6 cut(s) 1143, 1339, 1637, 1870, 2310, 2450
HapII CCGG 2 cut(s) 1846, 2531
HhaI GCGC 1 cut(s) 2222
Hin6I GCGC 1 cut(s) 2220
HinP1I GCGC 1 cut(s) 2220
HincII GTYRAC 1 cut(s) 1678
HindII GTYRAC 1 cut(s) 1678
HindIII AAGCTT 2 cut(s) 486, 2267
HpaII CCGG 2 cut(s) 1846, 2531
HphI GGTGA 4 cut(s) 1226, 1236, 1981, 2175
Hpy166II GTNNAC 3 cut(s) 1106, 1256, 1678
Hpy188I TCNGA 9 cut(s) 178, 434, 615, 1095, 1139, 1318, 1764, 2025, 2482
Hpy188III TCNNGA 8 cut(s) 10, 116, 237, 769, 1073, 1103, 1430, 1838
Hpy8I GTNNAC 3 cut(s) 1106, 1256, 1678
HpyAV CCTTC 7 cut(s) 408, 422, 742, 746, 1435, 1511, 2107
HpyCH4III ACNGT 3 cut(s) 1251, 1295, 1527
HpyCH4IV ACGT 4 cut(s) 576, 759, 855, 2394
HpyF10VI GCNNNNNNNGC 9 cut(s) 263, 266, 473, 971, 980, 1637, 1743, 1876, 2053
HpyF3I CTNAG 8 cut(s) 94, 175, 204, 363, 556, 1082, 1431, 2400
HpySE526I ACGT 4 cut(s) 576, 759, 855, 2394
HspAI GCGC 1 cut(s) 2220
Kzo9I GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 2 cut(s) 1037, 1220
Lsp1109I GCAGC 9 cut(s) 143, 247, 275, 278, 424, 961, 1652, 2224, 2227
LweI GCATC 8 cut(s) 99, 244, 553, 654, 961, 1276, 1618, 2463
MaeI CTAG 5 cut(s) 839, 1131, 1575, 2019, 2163
MaeII ACGT 4 cut(s) 576, 759, 855, 2394
MalI GATC 9 cut(s) 8, 348, 767, 1021, 1071, 1455, 1666, 2133, 2157
MbiI CCGCTC 1 cut(s) 1098
MboI GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
MboII GAAGA 7 cut(s) 312, 881, 1156, 1176, 1804, 2428, 2531
MflI RGATCY 2 cut(s) 1069, 1664
MhlI GDGCHC 2 cut(s) 372, 838
MlsI TGGCCA 1 cut(s) 1339
MluCI AATT 8 cut(s) 127, 342, 477, 820, 1230, 1621, 1650, 2313
MluNI TGGCCA 1 cut(s) 1339
MlyI GAGTC 5 cut(s) 227, 591, 684, 951, 2105
MmeI TCCRAC 5 cut(s) 638, 875, 924, 934, 947
Mox20I TGGCCA 1 cut(s) 1339
Mph1103I ATGCAT 1 cut(s) 1753
MscI TGGCCA 1 cut(s) 1339
MseI TTAA 8 cut(s) 228, 483, 656, 1851, 2036, 2084, 2169, 2319
MslI CAYNNNNRTG 5 cut(s) 71, 95, 164, 1249, 1895
Msp20I TGGCCA 1 cut(s) 1339
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 2 cut(s) 1846, 2531
MspR9I CCNGG 4 cut(s) 62, 641, 1341, 2532
MvaI CCWGG 3 cut(s) 62, 641, 1341
MwoI GCNNNNNNNGC 9 cut(s) 263, 266, 473, 971, 980, 1637, 1743, 1876, 2053
NciI CCSGG 1 cut(s) 2532
NcoI CCATGG 2 cut(s) 990, 2301
NdeI CATATG 2 cut(s) 690, 1540
NdeII GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
NlaIV GGNNCC 6 cut(s) 199, 313, 369, 1033, 1326, 1781
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 6 cut(s) 1214, 1242, 1459, 1477, 2195, 2395
NsiI ATGCAT 1 cut(s) 1753
NspI RCATGY 2 cut(s) 1501, 1900
OliI CACNNNNGTG 1 cut(s) 1249
PagI TCATGA 1 cut(s) 768
PceI AGGCCT 1 cut(s) 1143
PciI ACATGT 1 cut(s) 1497
PciSI GCTCTTC 1 cut(s) 864
PfeI GAWTC 5 cut(s) 40, 449, 1346, 1700, 2483
Pfl23II CGTACG 1 cut(s) 1527
PflFI GACNNNGTC 1 cut(s) 1598
PflMI CCANNNNNTGG 2 cut(s) 1253, 2206
PleI GAGTC 5 cut(s) 227, 590, 683, 951, 2104
PpsI GAGTC 5 cut(s) 227, 590, 683, 951, 2104
Ppu21I YACGTR 1 cut(s) 856
PpuMI RGGWCCY 2 cut(s) 311, 1780
PscI ACATGT 1 cut(s) 1497
PshBI ATTAAT 1 cut(s) 1851
Psp5II RGGWCCY 2 cut(s) 311, 1780
Psp6I CCWGG 3 cut(s) 60, 639, 1339
PspEI GGTNACC 2 cut(s) 1242, 1521
PspGI CCWGG 3 cut(s) 60, 639, 1339
PspLI CGTACG 1 cut(s) 1527
PspN4I GGNNCC 6 cut(s) 199, 313, 369, 1033, 1326, 1781
PspPI GGNCC 8 cut(s) 197, 274, 311, 1325, 1600, 1780, 1868, 2309
PspPPI RGGWCCY 2 cut(s) 311, 1780
PstI CTGCAG 1 cut(s) 265
PsuI RGATCY 2 cut(s) 1069, 1664
PsyI GACNNNGTC 1 cut(s) 1598
RsaI GTAC 6 cut(s) 858, 1129, 1529, 1573, 2285, 2367
RsaNI GTAC 6 cut(s) 857, 1128, 1528, 1572, 2284, 2366
RseI CAYNNNNRTG 5 cut(s) 71, 95, 164, 1249, 1895
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 8 cut(s) 228, 483, 656, 1851, 2036, 2084, 2169, 2319
Sau3AI GATC 9 cut(s) 6, 346, 765, 1019, 1069, 1453, 1664, 2131, 2155
Sau96I GGNCC 8 cut(s) 197, 274, 311, 1325, 1600, 1780, 1868, 2309
ScaI AGTACT 2 cut(s) 1129, 2285
SchI GAGTC 5 cut(s) 227, 591, 684, 951, 2105
ScrFI CCNGG 4 cut(s) 62, 641, 1341, 2532
SduI GDGCHC 2 cut(s) 372, 838
SfaNI GCATC 8 cut(s) 99, 244, 553, 654, 961, 1276, 1618, 2463
SfcI CTRYAG 2 cut(s) 261, 2244
SinI GGWCC 6 cut(s) 197, 274, 311, 1325, 1600, 1780
SmiMI CAYNNNNRTG 5 cut(s) 71, 95, 164, 1249, 1895
SmlI CTYRAG 3 cut(s) 456, 793, 2042
SmoI CTYRAG 3 cut(s) 456, 793, 2042
SnaBI TACGTA 1 cut(s) 856
SpeI ACTAGT 1 cut(s) 1574
Sse9I AATT 8 cut(s) 127, 342, 477, 820, 1230, 1621, 1650, 2313
SseBI AGGCCT 1 cut(s) 1143
SsiI CCGC 5 cut(s) 258, 1098, 1148, 1638, 1744
SspMI CTAG 5 cut(s) 839, 1131, 1575, 2019, 2163
StuI AGGCCT 1 cut(s) 1143
StyD4I CCNGG 4 cut(s) 60, 639, 1339, 2530
StyI CCWWGG 3 cut(s) 990, 2301, 2494
TaaI ACNGT 3 cut(s) 1251, 1295, 1527
TaiI ACGT 4 cut(s) 579, 762, 858, 2397
TaqI TCGA 6 cut(s) 580, 701, 1074, 1626, 2384, 2424
TaqII GACCGA 1 cut(s) 1342
TasI AATT 8 cut(s) 127, 342, 477, 820, 1230, 1621, 1650, 2313
TatI WGTACW 2 cut(s) 1127, 2283
TauI GCSGC 3 cut(s) 260, 1640, 1746
TfiI GAWTC 5 cut(s) 40, 449, 1346, 1700, 2483
Tru1I TTAA 8 cut(s) 228, 483, 656, 1851, 2036, 2084, 2169, 2319
Tru9I TTAA 8 cut(s) 228, 483, 656, 1851, 2036, 2084, 2169, 2319
TscAI CASTG 4 cut(s) 102, 138, 1256, 1486
TseFI GTSAC 6 cut(s) 1214, 1242, 1459, 1477, 2195, 2395
TseI GCWGC 9 cut(s) 156, 260, 263, 266, 437, 974, 1640, 2237, 2240
Tsp45I GTSAC 6 cut(s) 1214, 1242, 1459, 1477, 2195, 2395
TspGWI ACGGA 6 cut(s) 575, 881, 1233, 2081, 2117, 2229
TspRI CASTG 4 cut(s) 102, 138, 1256, 1486
Tth111I GACNNNGTC 1 cut(s) 1598
Van91I CCANNNNNTGG 2 cut(s) 1253, 2206
VpaK11BI GGWCC 6 cut(s) 197, 274, 311, 1325, 1600, 1780
VspI ATTAAT 1 cut(s) 1851
XapI RAATTY 1 cut(s) 1621
XceI RCATGY 2 cut(s) 1501, 1900
XcmI CCANNNNNNNNNTGG 1 cut(s) 2299
XspI CTAG 5 cut(s) 839, 1131, 1575, 2019, 2163
ZrmI AGTACT 2 cut(s) 1129, 2285
Zsp2I ATGCAT 1 cut(s) 1753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.