RchiOBHm_Chr3g0492581

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000051
Physical Location & Seq
Reverse (-)
39393438 .. 39396836
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45547

Sequence Viewer

Length: 2847 bp
ATGAACAAAAAGTACCCTTGCAACCTTAATAATAAGCTTTCTCTCATATCTGTCTTTGTCTTGCTTCTTTCTTCATGGATTTCCTTGGCCATTCCACAAAACAGAACTATGATTCCAGTGGGGCTTGTTCTCGATGACTATAGTTCAGTGCGGGGCAAGATTTTGTTCAGTGTCTTCCAAATGGCCCTCTCCGACATCTCTGCTTATCACCCTAGCTACAAGACCAGACTGGTCTTGAAAACTAGGGAGTCGAAAAAAAATGTTGTTGGGGCAGCTGCCGCTGCTCTAAATCTGATAAAGAATGAAGAAGTGCAAGCCATCATCGGGCCAGTGACATCAATGGAGACAAGCTTTGTCATCAATCTCGGAGACCAAACTCATGTGCCCATCATATCATTTTCAGCAACAAGTCCTTCGCTTACTTCCCTCCGGAGCTCCTACTTTTTCCAGTTTGCACAAAATGACACATCCCAAGTGAAAGCTATAAGTGCAGTCATTAACAATTACGGGTGGAGACAAGTTGTGCCTATATACATAGACACTTCGTACGGCGAGGCAGTCATACCATTCTTAACCGATGCCTTACAAGAGATAGGTGTAAGTGTCCCCTACCGGAGTGTGATTTCCCCCTCTGCAACTGATGATCAAATTGCCAACGAGCTTTACAAGCTAATGATCATGCAAACTAGAGTCTTCATTGTCCATATGACAACCGATCTAAGCTCTAAGCTATTTGCCAAGGCAGAAGAGATTGGAATGATGGTTGAAGGCTATGTTTGGCTAACCACAAGTGGAATAACTAATCGTTTAACATCACTGAACTCTTCAGTAATCCATTCCATGAATGGAGCCATAGGTGTGCAAACTCATGTCCAAAAAACAGCAGAGCTAGAAGAATTCAAACTCCGGTGGAAAAGGCAATTCCAAAAGGACCATCCACACATCGTTGGCGCTGAATTGGATGTTTTCGGATTTTGGGCTTATGATGCTACTTTTGCACTAGCAATGGCAATTGAACAAGTGATTGGCAATACAAGTAGTTTTGATTTCCAAAAGCCAAATGCCTCCAAGAAGTCCACAGATATTCTTGACAGTTTTTCAATCTCTCCATATGGTCCAAAACTTTGCAAAGCCCTATCAACTACTAGATTCCCAGGCATTGCTGGAGATTTAATGCTCATTGATGGGCAACTTCAATCATCTAATTTTCGGATAATTAATGTCAACGGCCGTGGAGCAAGAACAATTGGATTTTGGACACCACACCATGGACTTGTTAGCAAAATGAATTATTCCACAAGCCATCTTGGACCTGTCATATGGCCAGGAGAGTCTCTCTCTGTTCCCAAAGGGTGGGAGATCCCAACAAAGGGCAAGAGGTTGAGAATAGGAGTTCCTGTAAAGGATGGGTTTTTCGAGTTTGTTAAGGTAACAAAAGATCCAACCAAGAACACAACGGATGCTACCGGATTCAGTATTGATGTGTTTAAGGCCGTAGTTGAGAAGTTGCCATATGCTATTTCGTATGACTTCATTCCTTTTGCAAAGCCTGATGGCACCACAGCTGGCAATTACAATGATATGTGCTATCAAGTGTACCTTGGGAACTTTGATGCTGTGGTCGGAGATACAACAATTAGAGCAAATAGGTCTCTGTATGTGGACTTTACGATGCCATATGCAGACACCGGAGTAGTAATGGTTGTACCCGTCGTAGACACAAATAAAAGAAGTGCATGTGCTTTCTTGAAGCCATGGGAATGGGACATTTGGCTTGCAATCATTATTTCCTTATTGTCAGTTGGTTTTGTCGTTTGGGCCGTTGAACATCACACTAATGAGGACTTTCGGGGCAAAACTGCTGAGCAAGAAGTTGGCAAAGTTGTCTGGTTCTCCTTCTCAACCATGGTTTTTGCTCACCATGAGAGAGTGGATAGCAACTTGGCTAGACTTGTTATGAGTATATGGATATTTGTTGTACTGGTGCTGACAATAAATTACCAAGCAAGTCTAACCTCAATATATACGGTTGAAAAACTTGAGCCAACTATTACCAGTATCCAGGATATATTAAAGAAGGGGGAAAACATTGGCTATATAGCATCTTCTTTTACTTACGAGACGTTGAAGCAAGTAGGTTTTGAAGATTCCAAGCTTAGGGCTTTCGGAACTATGGAAGCAATTGACGATGCTCTTTCAAACAGTGGCATCGCTGGTTTTGTTGATGAAACACCCTATATGAAGCTTTTTCTTGCAAGATATTGCAATAAATATACCATGATTGGACCCATCTTCAAAACCGATGGATTTGGCTTTGTATTTCCAAAACGCTCTCCTCTTCTACCGGATGTTTCCCAGGCAGTCCTGAACATTACCGGAGGAGAAACGATACTGAACATTGAAAACACATGGTTCAAGAAAGACGGCAACTGTGAAGACGTTAGTAACCCAAAAGTTTCCAGCAATAAACTTGACTTGAGAGACTTTCGGGTCCTATTTATCACTACCTTGGTGGCTTCAGGACTTGCTCTCATCATATATATAATTCGGTTCAGTTACAAGTATAGGGACGTTTGGAATTCTGAAACATCTATATGTAGAAGGATTGGGGCCATGTTAAAAAAATTTCTTGATATAGACCCCAATTCTCATACTTTTAGAGGCCAGCAGCCGGATGTAGTTACAACCTTTCCAAACAACAATAGCCCAGAAAGTCCGGTACTCATCCAGAATTCAAACCACTCAAATACGAATTATGTATCTTCTGATTCTGATTCTGATTCTGGACAGCAACGAACATCTGCCGAGTCTCCAGCTGAAGTTCATCTACTGATCAGCAATCACTGA

Protein Analysis

948

Amino Acids

105.6

Weight (kDa)

6.67

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 57 - 344 6.7e-18 Periplasmic binding protein
ANF_receptor PF01094 58 - 410 1.7e-80 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 478 - 569 7.7e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 485 - 806 2.9e-08 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 587 - 839 1.1e-32 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2489
AccB1I GGYRCC 1 cut(s) 1556
AccB7I CCANNNNNTGG 2 cut(s) 1268, 1353
AccI GTMKAC 1 cut(s) 1716
AccIII TCCGGA 1 cut(s) 429
AciI CCGC 2 cut(s) 151, 279
AclWI GGATC 2 cut(s) 1354, 1433
AcoI YGGCCR 3 cut(s) 87, 1228, 1322
AcsI RAATTY 4 cut(s) 896, 2578, 2624, 2731
AcuI CTGAAG 3 cut(s) 810, 2502, 2838
AfaI GTAC 6 cut(s) 14, 548, 1598, 1707, 1980, 2721
AfiI CCNNNNNNNGG 7 cut(s) 324, 1268, 1353, 1369, 1370, 2157, 2671
AjnI CCWGG 4 cut(s) 1153, 1324, 2061, 2355
AjuI GAANNNNNNNTTGG 2 cut(s) 1008, 1040
AloI GAACNNNNNNTCC 2 cut(s) 97, 129
Alw21I GWGCWC 1 cut(s) 437
Alw26I GTCTC 8 cut(s) 338, 363, 508, 1338, 1656, 2114, 2475, 2814
AlwI GGATC 2 cut(s) 1354, 1433
Aor13HI TCCGGA 1 cut(s) 429
AoxI GGCC 9 cut(s) 87, 183, 326, 1228, 1322, 1491, 1818, 2610, 2662
ApeKI GCWGC 4 cut(s) 272, 275, 281, 2668
ApoI RAATTY 4 cut(s) 896, 2578, 2624, 2731
AseI ATTAAT 1 cut(s) 1218
AspLEI GCGC 1 cut(s) 953
AspS9I GGNCC 9 cut(s) 184, 326, 931, 1115, 1310, 1818, 2285, 2491, 2610
AsuHPI GGTGA 2 cut(s) 200, 1910
AvaII GGWCC 5 cut(s) 931, 1115, 1310, 2285, 2491
BaeGI GKGCMC 1 cut(s) 387
BalI TGGCCA 2 cut(s) 89, 1324
BanI GGYRCC 1 cut(s) 1556
BanII GRGCYC 1 cut(s) 437
BarI GAAGNNNNNNTAC 2 cut(s) 2811, 2843
BbsI GAAGAC 3 cut(s) 166, 685, 2442
Bbv12I GWGCWC 1 cut(s) 437
BbvI GCAGC 4 cut(s) 262, 268, 284, 2680
BceAI ACGGC 6 cut(s) 565, 1215, 1243, 1478, 1805, 2440
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 4 cut(s) 1155, 1326, 2063, 2357
BciVI GTATCC 1 cut(s) 2069
BclI TGATCA 3 cut(s) 643, 675, 2832
BcoDI GTCTC 8 cut(s) 338, 363, 508, 1338, 1656, 2114, 2475, 2814
BfaI CTAG 7 cut(s) 213, 243, 687, 890, 1001, 1146, 1947
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 954
BfuI GTATCC 1 cut(s) 2069
BisI GCNGC 5 cut(s) 273, 276, 279, 282, 2669
BlpI GCTNAGC 1 cut(s) 1863
BlsI GCNGC 5 cut(s) 274, 277, 280, 283, 2670
Bme1390I CCNGG 4 cut(s) 1155, 1326, 2063, 2357
Bme18I GGWCC 5 cut(s) 931, 1115, 1310, 2285, 2491
BmgT120I GGNCC 9 cut(s) 184, 326, 931, 1115, 1310, 1818, 2285, 2491, 2610
BmiI GGNNCC 5 cut(s) 850, 1558, 2287, 2492, 2611
BmrFI CCNGG 4 cut(s) 1155, 1326, 2063, 2357
BmsI GCATC 8 cut(s) 568, 976, 1450, 1603, 1662, 2111, 2179, 2217
BpiI GAAGAC 3 cut(s) 166, 685, 2442
BplI GAGNNNNNCTC 4 cut(s) 1320, 1352, 1322, 1354
BpmI CTGGAG 2 cut(s) 1185, 2796
Bpu10I CCTNAGC 1 cut(s) 2156
Bpu1102I GCTNAGC 1 cut(s) 1863
BpuEI CTTGAG 2 cut(s) 2060, 2497
BsaI GGTCTC 2 cut(s) 363, 1656
BsaWI WCCGGW 8 cut(s) 429, 612, 906, 1466, 1688, 2344, 2375, 2716
BsaXI ACNNNNNCTCC 2 cut(s) 1383, 1413
Bsc4I CCNNNNNNNGG 7 cut(s) 324, 1268, 1353, 1369, 1370, 2157, 2671
Bse1I ACTGG 6 cut(s) 116, 234, 329, 448, 1986, 2055
Bse3DI GCAATG 2 cut(s) 1011, 1158
BseAI TCCGGA 1 cut(s) 429
BseBI CCWGG 4 cut(s) 1155, 1326, 2063, 2357
BseGI GGATG 8 cut(s) 467, 934, 967, 1411, 1465, 2353, 2680, 2724
BseLI CCNNNNNNNGG 7 cut(s) 324, 1268, 1353, 1369, 1370, 2157, 2671
BseMI GCAATG 2 cut(s) 1011, 1158
BseMII CTCAG 1 cut(s) 1854
BseNI ACTGG 6 cut(s) 116, 234, 329, 448, 1986, 2055
BseRI GAGGAG 2 cut(s) 2325, 2394
BseSI GKGCMC 1 cut(s) 387
BseX3I CGGCCG 1 cut(s) 1228
BseXI GCAGC 4 cut(s) 262, 268, 284, 2680
BsgI GTGCAG 1 cut(s) 510
Bsh1285I CGRYCG 1 cut(s) 1231
BshFI GGCC 9 cut(s) 89, 185, 328, 1230, 1324, 1493, 1820, 2612, 2664
BshNI GGYRCC 1 cut(s) 1556
BsiEI CGRYCG 1 cut(s) 1231
BsiHKAI GWGCWC 1 cut(s) 437
BsiSI CCGG 9 cut(s) 430, 613, 907, 1467, 1689, 2345, 2376, 2672, 2717
BsiWI CGTACG 1 cut(s) 546
BslFI GGGAC 3 cut(s) 590, 1778, 2582
BslI CCNNNNNNNGG 7 cut(s) 324, 1268, 1353, 1369, 1370, 2157, 2671
BsmAI GTCTC 8 cut(s) 338, 363, 508, 1338, 1656, 2114, 2475, 2814
BsmBI CGTCTC 1 cut(s) 2114
BsmFI GGGAC 3 cut(s) 590, 1778, 2582
BsnI GGCC 9 cut(s) 89, 185, 328, 1230, 1324, 1493, 1820, 2612, 2664
Bso31I GGTCTC 2 cut(s) 363, 1656
Bsp1286I GDGCHC 2 cut(s) 387, 437
Bsp13I TCCGGA 1 cut(s) 429
Bsp143I GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
Bsp1720I GCTNAGC 1 cut(s) 1863
Bsp19I CCATGG 3 cut(s) 1267, 1754, 1905
BspACI CCGC 2 cut(s) 151, 279
BspANI GGCC 9 cut(s) 89, 185, 328, 1230, 1324, 1493, 1820, 2612, 2664
BspCNI CTCAG 1 cut(s) 1855
BspEI TCCGGA 1 cut(s) 429
BspLI GGNNCC 5 cut(s) 850, 1558, 2287, 2492, 2611
BspPI GGATC 2 cut(s) 1354, 1433
BspT107I GGYRCC 1 cut(s) 1556
BspTNI GGTCTC 2 cut(s) 363, 1656
BsrDI GCAATG 2 cut(s) 1011, 1158
BsrI ACTGG 6 cut(s) 116, 234, 329, 448, 1986, 2055
BssMI GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
BssT1I CCWWGG 7 cut(s) 84, 738, 1267, 1600, 1754, 1905, 2508
Bst2UI CCWGG 4 cut(s) 1155, 1326, 2063, 2357
Bst4CI ACNGT 4 cut(s) 1094, 2029, 2204, 2432
Bst6I CTCTTC 3 cut(s) 741, 829, 2343
BstC8I GCNNGC 4 cut(s) 315, 1567, 1776, 2666
BstDEI CTNAG 4 cut(s) 719, 726, 1863, 2156
BstDSI CCRYGG 4 cut(s) 1231, 1267, 1754, 1905
BstF5I GGATG 8 cut(s) 467, 934, 967, 1411, 1465, 2353, 2680, 2724
BstH2I RGCGCY 1 cut(s) 954
BstHHI GCGC 1 cut(s) 953
BstKTI GATC 6 cut(s) 646, 678, 718, 1362, 1441, 2835
BstMAI GTCTC 8 cut(s) 338, 363, 508, 1338, 1656, 2114, 2475, 2814
BstMBI GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
BstMCI CGRYCG 1 cut(s) 1231
BstMWI GCNNNNNNNGC 6 cut(s) 278, 281, 488, 667, 986, 995
BstNI CCWGG 4 cut(s) 1155, 1326, 2063, 2357
BstNSI RCATGY 1 cut(s) 1740
BstSCI CCNGG 4 cut(s) 1153, 1324, 2061, 2355
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 4 cut(s) 262, 268, 284, 2680
BstV2I GAAGAC 3 cut(s) 166, 685, 2442
BstX2I RGATCY 2 cut(s) 1359, 1438
BstXI CCANNNNNNTGG 1 cut(s) 1761
BstYI RGATCY 2 cut(s) 1359, 1438
BstZI CGGCCG 1 cut(s) 1228
BsuI GTATCC 1 cut(s) 2069
BsuRI GGCC 9 cut(s) 89, 185, 328, 1230, 1324, 1493, 1820, 2612, 2664
BtgI CCRYGG 4 cut(s) 1231, 1267, 1754, 1905
BtgZI GCGATG 1 cut(s) 2194
BtsCI GGATG 8 cut(s) 467, 934, 967, 1411, 1465, 2353, 2680, 2724
BtsIMutI CAGTG 7 cut(s) 123, 153, 175, 336, 815, 2209, 2842
Cac8I GCNNGC 4 cut(s) 315, 1567, 1776, 2666
CfoI GCGC 1 cut(s) 953
Cfr13I GGNCC 9 cut(s) 184, 326, 931, 1115, 1310, 1818, 2285, 2491, 2610
Csp6I GTAC 6 cut(s) 13, 547, 1597, 1706, 1979, 2720
CspCI CAANNNNNGTGG 2 cut(s) 1213, 1248
CviQI GTAC 6 cut(s) 13, 547, 1597, 1706, 1979, 2720
DdeI CTNAG 4 cut(s) 719, 726, 1863, 2156
DpnI GATC 6 cut(s) 645, 677, 717, 1361, 1440, 2834
DpnII GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
DrdI GACNNNNNNGTC 1 cut(s) 2489
DseDI GACNNNNNNGTC 1 cut(s) 2489
EaeI YGGCCR 3 cut(s) 87, 1228, 1322
EagI CGGCCG 1 cut(s) 1228
Eam1104I CTCTTC 3 cut(s) 741, 829, 2343
EarI CTCTTC 3 cut(s) 741, 829, 2343
Ecl136II GAGCTC 1 cut(s) 435
EclXI CGGCCG 1 cut(s) 1228
Eco130I CCWWGG 7 cut(s) 84, 738, 1267, 1600, 1754, 1905, 2508
Eco24I GRGCYC 1 cut(s) 437
Eco31I GGTCTC 2 cut(s) 363, 1656
Eco47I GGWCC 5 cut(s) 931, 1115, 1310, 2285, 2491
Eco52I CGGCCG 1 cut(s) 1228
Eco53kI GAGCTC 1 cut(s) 435
Eco57I CTGAAG 3 cut(s) 810, 2502, 2838
EcoICRI GAGCTC 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 2491
EcoRI GAATTC 3 cut(s) 896, 2578, 2731
EcoRII CCWGG 4 cut(s) 1153, 1324, 2061, 2355
EcoT14I CCWWGG 7 cut(s) 84, 738, 1267, 1600, 1754, 1905, 2508
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 7 cut(s) 84, 738, 1267, 1600, 1754, 1905, 2508
Esp3I CGTCTC 1 cut(s) 2114
FalI AAGNNNNNCTT 2 cut(s) 1584, 1616
FaqI GGGAC 3 cut(s) 590, 1778, 2582
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 5 cut(s) 705, 1111, 1319, 1513, 1678
FbaI TGATCA 3 cut(s) 643, 675, 2832
FblI GTMKAC 1 cut(s) 1716
Fnu4HI GCNGC 5 cut(s) 273, 276, 279, 282, 2669
FokI GGATG 8 cut(s) 454, 921, 974, 1418, 1472, 2360, 2687, 2711
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 5 cut(s) 273, 276, 279, 282, 2669
FspBI CTAG 7 cut(s) 213, 243, 687, 890, 1001, 1146, 1947
GlaI GCGC 1 cut(s) 952
GluI GCNGC 5 cut(s) 273, 276, 279, 282, 2669
GsuI CTGGAG 2 cut(s) 1185, 2796
HaeII RGCGCY 1 cut(s) 954
HaeIII GGCC 9 cut(s) 89, 185, 328, 1230, 1324, 1493, 1820, 2612, 2664
HapII CCGG 9 cut(s) 430, 613, 907, 1467, 1689, 2345, 2376, 2672, 2717
HhaI GCGC 1 cut(s) 953
Hin6I GCGC 1 cut(s) 951
HinP1I GCGC 1 cut(s) 951
HincII GTYRAC 1 cut(s) 1225
HindII GTYRAC 1 cut(s) 1225
HindIII AAGCTT 4 cut(s) 35, 349, 2153, 2243
HpaII CCGG 9 cut(s) 430, 613, 907, 1467, 1689, 2345, 2376, 2672, 2717
HphI GGTGA 2 cut(s) 200, 1910
Hpy166II GTNNAC 5 cut(s) 1077, 1225, 1597, 1663, 1717
Hpy8I GTNNAC 5 cut(s) 1077, 1225, 1597, 1663, 1717
Hpy99I CGWCG 1 cut(s) 1715
HpyAV CCTTC 5 cut(s) 423, 761, 1906, 2071, 2595
HpyCH4III ACNGT 4 cut(s) 1094, 2029, 2204, 2432
HpyCH4IV ACGT 3 cut(s) 2123, 2439, 2571
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 281, 488, 667, 986, 995
HpyF3I CTNAG 4 cut(s) 719, 726, 1863, 2156
HpySE526I ACGT 3 cut(s) 2123, 2439, 2571
HspAI GCGC 1 cut(s) 951
Kpn2I TCCGGA 1 cut(s) 429
Ksp22I TGATCA 3 cut(s) 643, 675, 2832
Kzo9I GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
LmnI GCTCC 4 cut(s) 432, 440, 848, 1235
Lsp1109I GCAGC 4 cut(s) 262, 268, 284, 2680
LweI GCATC 8 cut(s) 568, 976, 1450, 1603, 1662, 2111, 2179, 2217
MaeI CTAG 7 cut(s) 213, 243, 687, 890, 1001, 1146, 1947
MaeII ACGT 3 cut(s) 2123, 2439, 2571
MaeIII GTNAC 5 cut(s) 331, 1429, 2444, 2555, 2680
MalI GATC 6 cut(s) 645, 677, 717, 1361, 1440, 2834
MboI GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
MfeI CAATTG 3 cut(s) 1011, 1245, 2181
MflI RGATCY 2 cut(s) 1359, 1438
MhlI GDGCHC 2 cut(s) 387, 437
MlsI TGGCCA 2 cut(s) 89, 1324
MluNI TGGCCA 2 cut(s) 89, 1324
MlyI GAGTC 4 cut(s) 257, 699, 1340, 2816
MmeI TCCRAC 3 cut(s) 216, 1466, 1603
Mox20I TGGCCA 2 cut(s) 89, 1324
MroI TCCGGA 1 cut(s) 429
MscI TGGCCA 2 cut(s) 89, 1324
MslI CAYNNNNRTG 4 cut(s) 857, 1759, 1836, 2593
Msp20I TGGCCA 2 cut(s) 89, 1324
MspA1I CMGCKG 4 cut(s) 275, 281, 1565, 2816
MspI CCGG 9 cut(s) 430, 613, 907, 1467, 1689, 2345, 2376, 2672, 2717
MspR9I CCNGG 4 cut(s) 1155, 1326, 2063, 2357
MunI CAATTG 3 cut(s) 1011, 1245, 2181
MvaI CCWGG 4 cut(s) 1155, 1326, 2063, 2357
MwoI GCNNNNNNNGC 6 cut(s) 278, 281, 488, 667, 986, 995
NcoI CCATGG 3 cut(s) 1267, 1754, 1905
NdeI CATATG 5 cut(s) 705, 1111, 1319, 1513, 1678
NdeII GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
NlaIV GGNNCC 5 cut(s) 850, 1558, 2287, 2492, 2611
NmeAIII GCCGAG 1 cut(s) 2830
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 1740
PcsI WCGNNNNNNNCGW 1 cut(s) 1818
PfeI GAWTC 7 cut(s) 112, 1149, 1470, 2147, 2768, 2774, 2780
Pfl23II CGTACG 1 cut(s) 546
PflMI CCANNNNNTGG 2 cut(s) 1268, 1353
PfoI TCCNGGA 1 cut(s) 2061
PkrI GCNGC 5 cut(s) 274, 277, 280, 283, 2670
PleI GAGTC 4 cut(s) 256, 698, 1339, 2815
PpsI GAGTC 4 cut(s) 256, 698, 1339, 2815
PpuMI RGGWCCY 1 cut(s) 2491
PshBI ATTAAT 1 cut(s) 1218
Psp124BI GAGCTC 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 2491
Psp6I CCWGG 4 cut(s) 1153, 1324, 2061, 2355
PspGI CCWGG 4 cut(s) 1153, 1324, 2061, 2355
PspLI CGTACG 1 cut(s) 546
PspN4I GGNNCC 5 cut(s) 850, 1558, 2287, 2492, 2611
PspPI GGNCC 9 cut(s) 184, 326, 931, 1115, 1310, 1818, 2285, 2491, 2610
PspPPI RGGWCCY 1 cut(s) 2491
PsrI GAACNNNNNNTAC 1 cut(s) 28
PsuI RGATCY 2 cut(s) 1359, 1438
PvuII CAGCTG 3 cut(s) 275, 1565, 2816
RsaI GTAC 6 cut(s) 14, 548, 1598, 1707, 1980, 2721
RsaNI GTAC 6 cut(s) 13, 547, 1597, 1706, 1979, 2720
RseI CAYNNNNRTG 4 cut(s) 857, 1759, 1836, 2593
SacI GAGCTC 1 cut(s) 437
SatI GCNGC 5 cut(s) 273, 276, 279, 282, 2669
Sau3AI GATC 6 cut(s) 643, 675, 715, 1359, 1438, 2832
Sau96I GGNCC 9 cut(s) 184, 326, 931, 1115, 1310, 1818, 2285, 2491, 2610
SchI GAGTC 4 cut(s) 257, 699, 1340, 2816
ScrFI CCNGG 4 cut(s) 1155, 1326, 2063, 2357
SduI GDGCHC 2 cut(s) 387, 437
SfaNI GCATC 8 cut(s) 568, 976, 1450, 1603, 1662, 2111, 2179, 2217
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 5 cut(s) 931, 1115, 1310, 2285, 2491
SmiMI CAYNNNNRTG 4 cut(s) 857, 1759, 1836, 2593
SmlI CTYRAG 2 cut(s) 2039, 2476
SmoI CTYRAG 2 cut(s) 2039, 2476
SsiI CCGC 2 cut(s) 151, 279
SspMI CTAG 7 cut(s) 213, 243, 687, 890, 1001, 1146, 1947
SstI GAGCTC 1 cut(s) 437
StyD4I CCNGG 4 cut(s) 1153, 1324, 2061, 2355
StyI CCWWGG 7 cut(s) 84, 738, 1267, 1600, 1754, 1905, 2508
TaaI ACNGT 4 cut(s) 1094, 2029, 2204, 2432
TaiI ACGT 3 cut(s) 2126, 2442, 2574
TaqI TCGA 3 cut(s) 132, 251, 1416
TatI WGTACW 1 cut(s) 1978
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 7 cut(s) 112, 1149, 1470, 2147, 2768, 2774, 2780
TscAI CASTG 6 cut(s) 123, 153, 175, 336, 822, 2209
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 272, 275, 281, 2668
Tsp45I GTSAC 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 1472
TspRI CASTG 6 cut(s) 123, 153, 175, 336, 822, 2209
Van91I CCANNNNNTGG 2 cut(s) 1268, 1353
VpaK11BI GGWCC 5 cut(s) 931, 1115, 1310, 2285, 2491
VspI ATTAAT 1 cut(s) 1218
XapI RAATTY 4 cut(s) 896, 2578, 2624, 2731
XceI RCATGY 1 cut(s) 1740
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 1716
XspI CTAG 7 cut(s) 213, 243, 687, 890, 1001, 1146, 1947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.