Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

43729556 .. 43733921

Gene Structure 4366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

ATGATTCATGCACAAAATACAACAATCCCAGTGAATGTTGGTGTTGTTCTTGACTTTGATTCAGGGGGCGGGAAGACTGCAAAGGTGTACTTGAGTTGCATTGAAATGGCCCTCTCAGATTTTTATTCATCTCATCCTTACTTCAAGACGAGGATAGTATTGAACACAAGGAACTCCAAACAAACTGTTGTTGGTGCAGCTGTGGCAGAGAATTATAGATTTATAGCCGAGTCACCCGAGTGTGCTATGGATATATATGTTCAAAAGTTTCAAAAGGAGACAGCTCTGGATCTGATAAAGAATGCAGAAGTTCTAGCAATATTAGGGCCTGAAACATCAATGCAGGCGAGCTTCATTGTTAATTTGGGAGACGAAGCTCATGTGCCCATTTTATCATTTTCTGCATCAGCACCTTATATTACTTCGCTCCGGAGCCCTTACTTTTTCAGAATTACTCAAACCGACTCATACCAAGTGAAAGCCATTAGTAGCATTGTTCAAAATTTTGGATGGAGACAAGTTGTACCAATCTACGTGGACAATATGTATGGGGAGGGAATTATACCTTTTCTCATTGATGCCTTGCAAGATGTTGATGCTCATGTCCCTTACCGTAGTGTCATTTCCCCATCAGCAACTGGTGACCAGATTATAAAAGAGCTTTACAAATTAATGACAATGCAAACTAGAGTCTTCATCGTGCATATGAATTCCAATCTTTGCTCTAAGCTGTTTTCCAAGGCAAAAGAGATAGGAATGATGAGTAAAGGATATGTTTGGATCTTGACCGATGGGATTTCTAATCGTTTAAATTCGTTGAATTCTTCAGCCATAGCTTCCATGGAAGGTGTGTTAGGTATCAAAACATTCATCCCGAGAACAACAGAACTTGAAAAATTCGAGCTCCGGTGGAAAGGGCAATTCCAACAAGACAACCCAACCATTATAGATGTTCAATTGGATGTTTATGCACTTCAGGCTTATGATGCGGCTTTTGCATTAGCCGTGTCAATCGAAAGTGTTGGGATCAGTACAAGCTCTGAAATCCACAAGGATGCTTCCTTCAACTCACCTAACCTTGATACTTACAAGGTCTCTGAAAATGGTCCTAAACTTGCTGAAGCATTATCAATTACTAGATTCAAAGGCATAGCTGGAGACTTCAAGCTTGTAGAAGGGCAACTTCAGTCATCAACTTTTACAATTATTAATATAAAAGGTGAGGGAGGAAAACCGGTTGCATTTTGGACTCCGCAAAATCAAATGGTGAAACAGTTGAATGACTCAACAAACACAAGCATCCTTTCAACTAATTCCAAGAGCAATCTTGGACCAATTAAATGGCCTGGAAATTCTCTCTCTGTTCCAAGGGGATGGGAGATACCAACAAATGGCAAGAAGCTGATAATAGGAGTTCCTGTCAAGATTGATTTTACTGAATTTGTTAAGATCTCGAAAGATCCAAAGACCGGCACAATGGATGTCACTGGGTTCTGTATTGATGTCTTTCATGCTGCATTGAAAGTACTACCTTATGCTCTTCCTTATGAGTTCGCTCCCTTCTCAAACCCTGATGGCACTAGTGCTGGCAATTATAATGATTTGGTCTATCAAGTATATCTTGGGAAGTTTGATGCCGTCGTTGGAGATACAACAATTAGAGCAAATAGGTCCTTGTACGTGGACTTTACAATGCCATACACAGAATCTGGTGTTGTAATGGTGGTGCCAATCATAGACACAACGAGCAAGAATGCATGGGTTTTCTTGAAGCCTTTGACTTGGGACCTGTGGCTTTCAACTTTTTGTTTCTTCCTCTTTACTGGTTTTGTTGTTTGGGTTCTTGAACATCGAATTAATGAAGACTTTCGTGGTCCTCCTTCACATCAATTTGGGACTACTGTCTGGTTTTCCTTCTCAACTATGGTTTTCTCACAAAAAGAGAATGTGATTAGCAACTTGACTAGATTCGTGATGATTATATGGGTATTCGTTGTCCTAATATTGACACAAAGTTATACAGCTAATCTAGCATCGCTATTAACTGTCCAACAACTTAAGCCAACCGTTGTTGATATTAAGGATCTTTTAAGGAAGGGGGATAGTGTCGGGTACGCTAAGAATGCTTATGTTTATGGACTCTTGAAAGAAGTAGGTTTCAATGATTCAAATCTTAAAAGTTTTAGAACTATGGAAGCACTTGATGAAGCTCTTTCAAAAGGGAGTGCAAATGGTGGTATTGCTGCTTTTGTTGATGAAACCCCAACTATGAAGCTTTTTCTTGCAAAGTATTGTTCTAAATATACCATGATTGGACCTATCTTTAAAACTGAAGGGTTTGGTTTTGTGTTTCCAAAGCGTTCCCCTCTTCTACCTGATGTTTCGCAAGCAATCCTAGATGTAACTGAAGGAGAGCAGATGATGAGCATTGAATCAAAATGGTTCAGGAAAGAAAGCAATTGTCAAAGCTCCAGCCAACTGGGTTCTAGCAACAGTCTTGGACTCGATAGCTTTTGGGGTTTATTCCTCATTGCTGGAGTGGCTTCAATATTCGCTCTCATCATATTTGTAGCTTCATTTCTTTACGAGAATGGACACCTATTGATAGATCCTGATTCAGAAGCTTCGACATCAGAAAGGATTGGGGTCTTGTTCAAAATTTTCAATCAGAAAGACCTAAATTCTCGTACATTTAAGAGCAGTCAACCTAGAGATCGTATCACTGATGCTAGAGATGAAGTAAACATCTCACCAAATAACAACTGGCCAGAAAGTCCATTTAGCTACAGCAATCACAGTGATGGCAATTCAGAGCAACACACACCACCTCCAGGTCAAGCATCTTCAGAATCAGTTCCAAGGCATGGATTCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

958

Amino Acids

106.34

Weight (kDa)

5.84

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	33 - 407	2.1e-75	Receptor family ligand binding region
Peripla_BP_6	PF13458	93 - 342	1.2e-10	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	486 - 576	1.2e-07	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	531 - 816	3e-07	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	594 - 848	6.8e-40	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	653, 1596
AccB1I	GGYRCC	1 cut(s)	1726
AccB7I	CCANNNNNTGG	2 cut(s)	1391, 2864
AccIII	TCCGGA	1 cut(s)	429
AciI	CCGC	3 cut(s)	69, 989, 1253
AclWI	GGATC	6 cut(s)	297, 788, 1034, 1454, 2091, 2603
AcoI	YGGCCR	1 cut(s)	2765
AcsI	RAATTY	9 cut(s)	502, 709, 811, 820, 896, 1351, 1439, 2658, 2680
AcuI	CTGAAG	7 cut(s)	810, 959, 1140, 1169, 2352, 2427, 2829
AfaI	GTAC	7 cut(s)	89, 525, 1033, 1527, 1679, 2114, 2689
AfiI	CCNNNNNNNGG	4 cut(s)	1391, 1469, 2831, 2864
AflII	CTTAAG	1 cut(s)	2057
AgeI	ACCGGT	1 cut(s)	1234
AhlI	ACTAGT	1 cut(s)	1580
AjnI	CCWGG	2 cut(s)	1345, 2830
AleI	CACNNNNGTG	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	906
Alw26I	GTCTC	5 cut(s)	272, 363, 508, 1099, 1152
AlwI	GGATC	6 cut(s)	297, 788, 1034, 1454, 2091, 2603
AlwNI	CAGNNNCTG	2 cut(s)	638, 1709
Ama87I	CYCGRG	2 cut(s)	236, 874
Aor13HI	TCCGGA	1 cut(s)	429
AoxI	GGCC	4 cut(s)	108, 326, 1343, 2765
ApeKI	GCWGC	3 cut(s)	197, 1514, 2243
ApoI	RAATTY	9 cut(s)	502, 709, 811, 820, 896, 1351, 1439, 2658, 2680
AseI	ATTAAT	3 cut(s)	671, 1209, 1857
AsiGI	ACCGGT	1 cut(s)	1234
Asp700I	GAANNNNTTC	2 cut(s)	1866, 2853
AspS9I	GGNCC	8 cut(s)	109, 326, 1106, 1331, 1671, 1786, 1874, 2315
AsuHPI	GGTGA	6 cut(s)	225, 653, 1062, 1232, 1279, 2742
AvaI	CYCGRG	2 cut(s)	236, 874
AvaII	GGWCC	6 cut(s)	1106, 1331, 1671, 1786, 1874, 2315
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	2767
BanI	GGYRCC	1 cut(s)	1726
BanII	GRGCYC	2 cut(s)	437, 906
BbsI	GAAGAC	3 cut(s)	80, 685, 1869
Bbv12I	GWGCWC	1 cut(s)	906
BbvI	GCAGC	3 cut(s)	209, 1501, 2230
BccI	CCATC	6 cut(s)	504, 637, 785, 1368, 1568, 2795
BceAI	ACGGC	2 cut(s)	989, 1622
BciT130I	CCWGG	2 cut(s)	1347, 2832
BcoDI	GTCTC	5 cut(s)	272, 363, 508, 1099, 1152
BcuI	ACTAGT	1 cut(s)	1580
BfmI	CTRYAG	1 cut(s)	2785
BfrI	CTTAAG	1 cut(s)	2057
BglII	AGATCT	1 cut(s)	1449
BisI	GCNGC	4 cut(s)	198, 990, 1515, 2244
BlsI	GCNGC	4 cut(s)	199, 991, 1516, 2245
BmcAI	AGTACT	1 cut(s)	1527
Bme1390I	CCNGG	2 cut(s)	1347, 2832
Bme18I	GGWCC	6 cut(s)	1106, 1331, 1671, 1786, 1874, 2315
BmeT110I	CYCGRG	2 cut(s)	236, 874
BmgT120I	GGNCC	8 cut(s)	109, 326, 1106, 1331, 1671, 1786, 1874, 2315
BmiI	GGNNCC	3 cut(s)	434, 1728, 1787
BmrFI	CCNGG	2 cut(s)	1347, 2832
BmrI	ACTGGG	3 cut(s)	23, 1497, 2489
BmuI	ACTGGG	3 cut(s)	23, 1497, 2489
BoxI	GACNNNNGTC	1 cut(s)	1901
BpiI	GAAGAC	3 cut(s)	80, 685, 1869
BpmI	CTGGAG	4 cut(s)	1176, 2455, 2556, 2814
BpuEI	CTTGAG	1 cut(s)	112
BsaAI	YACGTR	2 cut(s)	535, 1681
BsaBI	GATNNNNATC	1 cut(s)	2169
BsaI	GGTCTC	1 cut(s)	1099
BsaJI	CCNNGG	4 cut(s)	738, 840, 1367, 2858
BsaWI	WCCGGW	3 cut(s)	429, 906, 1234
BsaXI	ACNNNNNCTCC	4 cut(s)	1404, 1434, 2812, 2842
Bsc4I	CCNNNNNNNGG	4 cut(s)	1391, 1469, 2831, 2864
Bse118I	RCCGGY	2 cut(s)	1234, 1469
Bse1I	ACTGG	6 cut(s)	29, 643, 1492, 1828, 2484, 2768
Bse3DI	GCAATG	1 cut(s)	2529
Bse8I	GATNNNNATC	1 cut(s)	2169
BseAI	TCCGGA	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	1347, 2832
BseDI	CCNNGG	4 cut(s)	738, 840, 1367, 2858
BseGI	GGATG	8 cut(s)	133, 515, 870, 967, 1060, 1299, 1379, 1486
BseJI	GATNNNNATC	1 cut(s)	2169
BseLI	CCNNNNNNNGG	4 cut(s)	1391, 1469, 2831, 2864
BseMI	GCAATG	1 cut(s)	2529
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	6 cut(s)	29, 643, 1492, 1828, 2484, 2768
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	209, 1501, 2230
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	4 cut(s)	110, 328, 1345, 2767
BshNI	GGYRCC	1 cut(s)	1726
BshTI	ACCGGT	1 cut(s)	1234
BsiHKAI	GWGCWC	1 cut(s)	906
BsiHKCI	CYCGRG	2 cut(s)	236, 874
BsiSI	CCGG	4 cut(s)	430, 907, 1235, 1470
BslFI	GGGAC	3 cut(s)	590, 1799, 1909
BslI	CCNNNNNNNGG	4 cut(s)	1391, 1469, 2831, 2864
BsmAI	GTCTC	5 cut(s)	272, 363, 508, 1099, 1152
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	3 cut(s)	590, 1799, 1909
BsmI	GAATGC	3 cut(s)	307, 1759, 2128
BsnI	GGCC	4 cut(s)	110, 328, 1345, 2767
Bso31I	GGTCTC	1 cut(s)	1099
BsoBI	CYCGRG	2 cut(s)	236, 874
Bsp1286I	GDGCHC	3 cut(s)	387, 437, 906
Bsp13I	TCCGGA	1 cut(s)	429
Bsp143I	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	3 cut(s)	69, 989, 1253
BspANI	GGCC	4 cut(s)	110, 328, 1345, 2767
BspCNI	CTCAG	1 cut(s)	128
BspEI	TCCGGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	434, 1728, 1787
BspPI	GGATC	6 cut(s)	297, 788, 1034, 1454, 2091, 2603
BspQI	GCTCTTC	1 cut(s)	1545
BspT107I	GGYRCC	1 cut(s)	1726
BspTI	CTTAAG	1 cut(s)	2057
BspTNI	GGTCTC	1 cut(s)	1099
BsrDI	GCAATG	1 cut(s)	2529
BsrFI	RCCGGY	2 cut(s)	1234, 1469
BsrI	ACTGG	6 cut(s)	29, 643, 1492, 1828, 2484, 2768
BssAI	RCCGGY	2 cut(s)	1234, 1469
BssECI	CCNNGG	4 cut(s)	738, 840, 1367, 2858
BssMI	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
BssT1I	CCWWGG	4 cut(s)	738, 840, 1367, 2858
Bst2UI	CCWGG	2 cut(s)	1347, 2832
Bst4CI	ACNGT	8 cut(s)	187, 614, 1275, 1903, 2047, 2068, 2495, 2798
Bst6I	CTCTTC	2 cut(s)	1545, 2373
BstAFI	CTTAAG	1 cut(s)	2057
BstBAI	YACGTR	2 cut(s)	535, 1681
BstC8I	GCNNGC	4 cut(s)	345, 349, 1588, 2388
BstDEI	CTNAG	3 cut(s)	115, 726, 2118
BstDSI	CCRYGG	1 cut(s)	840
BstEII	GGTNACC	1 cut(s)	641
BstF5I	GGATG	8 cut(s)	133, 515, 870, 967, 1060, 1299, 1379, 1486
BstKTI	GATC	8 cut(s)	292, 783, 1029, 1452, 1462, 2086, 2611, 2716
BstMAI	GTCTC	5 cut(s)	272, 363, 508, 1099, 1152
BstMBI	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 977, 986, 995, 2030, 2123, 2540
BstNI	CCWGG	2 cut(s)	1347, 2832
BstPAI	GACNNNNGTC	1 cut(s)	1901
BstPI	GGTNACC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	1345, 2830
BstSFI	CTRYAG	1 cut(s)	2785
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	209, 1501, 2230
BstV2I	GAAGAC	3 cut(s)	80, 685, 1869
BstX2I	RGATCY	6 cut(s)	289, 780, 1449, 1459, 2083, 2608
BstXI	CCANNNNNNTGG	3 cut(s)	1341, 1374, 2479
BstYI	RGATCY	6 cut(s)	289, 780, 1449, 1459, 2083, 2608
BsuRI	GGCC	4 cut(s)	110, 328, 1345, 2767
BtgI	CCRYGG	1 cut(s)	840
BtgZI	GCGATG	1 cut(s)	2019
BtsCI	GGATG	8 cut(s)	133, 515, 870, 967, 1060, 1299, 1379, 1486
BtsIMutI	CAGTG	4 cut(s)	36, 1485, 2721, 2803
Cac8I	GCNNGC	4 cut(s)	345, 349, 1588, 2388
CaiI	CAGNNNCTG	2 cut(s)	638, 1709
Cfr10I	RCCGGY	2 cut(s)	1234, 1469
Cfr13I	GGNCC	8 cut(s)	109, 326, 1106, 1331, 1671, 1786, 1874, 2315
Csp6I	GTAC	7 cut(s)	88, 524, 1032, 1526, 1678, 2113, 2688
CspAI	ACCGGT	1 cut(s)	1234
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	8 cut(s)	8, 380, 602, 841, 1511, 1758, 2308, 2864
CviQI	GTAC	7 cut(s)	88, 524, 1032, 1526, 1678, 2113, 2688
DdeI	CTNAG	3 cut(s)	115, 726, 2118
DpnI	GATC	8 cut(s)	291, 782, 1028, 1451, 1461, 2085, 2610, 2715
DpnII	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
DraI	TTTAAA	2 cut(s)	810, 2326
EaeI	YGGCCR	1 cut(s)	2765
Eam1104I	CTCTTC	2 cut(s)	1545, 2373
EarI	CTCTTC	2 cut(s)	1545, 2373
Ecl136II	GAGCTC	1 cut(s)	904
Eco130I	CCWWGG	4 cut(s)	738, 840, 1367, 2858
Eco24I	GRGCYC	2 cut(s)	437, 906
Eco31I	GGTCTC	1 cut(s)	1099
Eco47I	GGWCC	6 cut(s)	1106, 1331, 1671, 1786, 1874, 2315
Eco53kI	GAGCTC	1 cut(s)	904
Eco57I	CTGAAG	7 cut(s)	810, 959, 1140, 1169, 2352, 2427, 2829
Eco88I	CYCGRG	2 cut(s)	236, 874
Eco91I	GGTNACC	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	904
EcoO109I	RGGNCCY	3 cut(s)	326, 1671, 1786
EcoO65I	GGTNACC	1 cut(s)	641
EcoRI	GAATTC	2 cut(s)	709, 820
EcoRII	CCWGG	2 cut(s)	1345, 2830
EcoT14I	CCWWGG	4 cut(s)	738, 840, 1367, 2858
EcoT22I	ATGCAT	1 cut(s)	1759
EcoT38I	GRGCYC	2 cut(s)	437, 906
ErhI	CCWWGG	4 cut(s)	738, 840, 1367, 2858
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	8 cut(s)	11, 383, 605, 844, 1514, 1761, 2311, 2867
FalI	AAGNNNNNCTT	6 cut(s)	74, 106, 1167, 1199, 1605, 1637
FaqI	GGGAC	3 cut(s)	590, 1799, 1909
FatI	CATG	8 cut(s)	7, 379, 601, 840, 1510, 1757, 2307, 2863
FauI	CCCGC	1 cut(s)	62
FauNDI	CATATG	1 cut(s)	705
Fnu4HI	GCNGC	4 cut(s)	198, 990, 1515, 2244
FokI	GGATG	8 cut(s)	120, 522, 857, 974, 1067, 1286, 1386, 1493
FriOI	GRGCYC	2 cut(s)	437, 906
Fsp4HI	GCNGC	4 cut(s)	198, 990, 1515, 2244
GluI	GCNGC	4 cut(s)	198, 990, 1515, 2244
GsuI	CTGGAG	4 cut(s)	1176, 2455, 2556, 2814
HaeIII	GGCC	4 cut(s)	110, 328, 1345, 2767
HapII	CCGG	4 cut(s)	430, 907, 1235, 1470
Hin1II	CATG	8 cut(s)	11, 383, 605, 844, 1514, 1761, 2311, 2867
HincII	GTYRAC	1 cut(s)	2705
HindII	GTYRAC	1 cut(s)	2705
HindIII	AAGCTT	3 cut(s)	1166, 2273, 2622
HpaII	CCGG	4 cut(s)	430, 907, 1235, 1470
HphI	GGTGA	6 cut(s)	225, 653, 1062, 1232, 1279, 2742
Hpy166II	GTNNAC	5 cut(s)	88, 538, 1684, 2705, 2743
Hpy8I	GTNNAC	5 cut(s)	88, 538, 1684, 2705, 2743
Hpy99I	CGWCG	1 cut(s)	1643
HpyAV	CCTTC	9 cut(s)	839, 1072, 1169, 1570, 1890, 1924, 2089, 2327, 2402
HpyCH4III	ACNGT	8 cut(s)	187, 614, 1275, 1903, 2047, 2068, 2495, 2798
HpyCH4IV	ACGT	2 cut(s)	534, 1680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 977, 986, 995, 2030, 2123, 2540
HpyF3I	CTNAG	3 cut(s)	115, 726, 2118
HpySE526I	ACGT	2 cut(s)	534, 1680
Hsp92II	CATG	8 cut(s)	11, 383, 605, 844, 1514, 1761, 2311, 2867
Kpn2I	TCCGGA	1 cut(s)	429
Kzo9I	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
LguI	GCTCTTC	1 cut(s)	1545
LmnI	GCTCC	5 cut(s)	432, 432, 909, 1561, 2474
Lsp1109I	GCAGC	3 cut(s)	209, 1501, 2230
MaeII	ACGT	2 cut(s)	534, 1680
MaeIII	GTNAC	4 cut(s)	231, 641, 1483, 2401
MalI	GATC	8 cut(s)	291, 782, 1028, 1451, 1461, 2085, 2610, 2715
MboI	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
MboII	GAAGA	8 cut(s)	85, 685, 816, 1532, 1804, 1874, 2360, 2835
MfeI	CAATTG	2 cut(s)	956, 2458
MflI	RGATCY	6 cut(s)	289, 780, 1449, 1459, 2083, 2608
MhlI	GDGCHC	3 cut(s)	387, 437, 906
MlsI	TGGCCA	1 cut(s)	2767
MluNI	TGGCCA	1 cut(s)	2767
MlyI	GAGTC	7 cut(s)	239, 458, 699, 1243, 1277, 2133, 2496
MmeI	TCCRAC	3 cut(s)	949, 1624, 2074
Mox20I	TGGCCA	1 cut(s)	2767
Mph1103I	ATGCAT	1 cut(s)	1759
MroI	TCCGGA	1 cut(s)	429
MroXI	GAANNNNTTC	2 cut(s)	1866, 2853
MscI	TGGCCA	1 cut(s)	2767
MslI	CAYNNNNRTG	4 cut(s)	104, 238, 1053, 2799
Msp20I	TGGCCA	1 cut(s)	2767
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	2057
MspI	CCGG	4 cut(s)	430, 907, 1235, 1470
MspR9I	CCNGG	2 cut(s)	1347, 2832
MunI	CAATTG	2 cut(s)	956, 2458
Mva1269I	GAATGC	3 cut(s)	307, 1759, 2128
MvaI	CCWGG	2 cut(s)	1347, 2832
MwoI	GCNNNNNNNGC	7 cut(s)	203, 977, 986, 995, 2030, 2123, 2540
NcoI	CCATGG	1 cut(s)	840
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
NlaIII	CATG	8 cut(s)	11, 383, 605, 844, 1514, 1761, 2311, 2867
NlaIV	GGNNCC	3 cut(s)	434, 1728, 1787
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	3 cut(s)	231, 641, 1483
NsiI	ATGCAT	1 cut(s)	1759
OliI	CACNNNNGTG	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	1545
PctI	GAATGC	3 cut(s)	307, 1759, 2128
PdmI	GAANNNNTTC	2 cut(s)	1866, 2853
PflMI	CCANNNNNTGG	2 cut(s)	1391, 2864
PinAI	ACCGGT	1 cut(s)	1234
PkrI	GCNGC	4 cut(s)	199, 991, 1516, 2245
PleI	GAGTC	7 cut(s)	238, 458, 698, 1243, 1277, 2133, 2496
PpsI	GAGTC	7 cut(s)	238, 458, 698, 1243, 1277, 2133, 2496
Ppu21I	YACGTR	2 cut(s)	535, 1681
PpuMI	RGGWCCY	2 cut(s)	1671, 1786
PshAI	GACNNNNGTC	1 cut(s)	1901
PshBI	ATTAAT	3 cut(s)	671, 1209, 1857
PsiI	TTATAA	2 cut(s)	653, 1596
Psp124BI	GAGCTC	1 cut(s)	906
Psp5II	RGGWCCY	2 cut(s)	1671, 1786
Psp6I	CCWGG	2 cut(s)	1345, 2830
PspEI	GGTNACC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	1345, 2830
PspN4I	GGNNCC	3 cut(s)	434, 1728, 1787
PspPI	GGNCC	8 cut(s)	109, 326, 1106, 1331, 1671, 1786, 1874, 2315
PspPPI	RGGWCCY	2 cut(s)	1671, 1786
PstNI	CAGNNNCTG	2 cut(s)	638, 1709
PsuI	RGATCY	6 cut(s)	289, 780, 1449, 1459, 2083, 2608
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	7 cut(s)	89, 525, 1033, 1527, 1679, 2114, 2689
RsaNI	GTAC	7 cut(s)	88, 524, 1032, 1526, 1678, 2113, 2688
RseI	CAYNNNNRTG	4 cut(s)	104, 238, 1053, 2799
SacI	GAGCTC	1 cut(s)	906
SapI	GCTCTTC	1 cut(s)	1545
SatI	GCNGC	4 cut(s)	198, 990, 1515, 2244
Sau3AI	GATC	8 cut(s)	289, 780, 1026, 1449, 1459, 2083, 2608, 2713
Sau96I	GGNCC	8 cut(s)	109, 326, 1106, 1331, 1671, 1786, 1874, 2315
ScaI	AGTACT	1 cut(s)	1527
SchI	GAGTC	7 cut(s)	239, 458, 699, 1243, 1277, 2133, 2496
ScrFI	CCNGG	2 cut(s)	1347, 2832
SduI	GDGCHC	3 cut(s)	387, 437, 906
SfcI	CTRYAG	1 cut(s)	2785
SinI	GGWCC	6 cut(s)	1106, 1331, 1671, 1786, 1874, 2315
SmiMI	CAYNNNNRTG	4 cut(s)	104, 238, 1053, 2799
SmlI	CTYRAG	2 cut(s)	91, 2057
SmoI	CTYRAG	2 cut(s)	91, 2057
SpeI	ACTAGT	1 cut(s)	1580
SsiI	CCGC	3 cut(s)	69, 989, 1253
SspI	AATATT	3 cut(s)	321, 2004, 2550
SstI	GAGCTC	1 cut(s)	906
StyD4I	CCNGG	2 cut(s)	1345, 2830
StyI	CCWWGG	4 cut(s)	738, 840, 1367, 2858
TaaI	ACNGT	8 cut(s)	187, 614, 1275, 1903, 2047, 2068, 2495, 2798
TaiI	ACGT	2 cut(s)	537, 1683
TaqI	TCGA	6 cut(s)	900, 1014, 1454, 1852, 2505, 2627
TaqII	GACCGA	1 cut(s)	803
TatI	WGTACW	3 cut(s)	87, 1031, 1525
TauI	GCSGC	1 cut(s)	992
TscAI	CASTG	4 cut(s)	36, 1492, 2728, 2803
TseFI	GTSAC	3 cut(s)	231, 641, 1483
TseI	GCWGC	3 cut(s)	197, 1514, 2243
Tsp45I	GTSAC	3 cut(s)	231, 641, 1483
TspRI	CASTG	4 cut(s)	36, 1492, 2728, 2803
Van91I	CCANNNNNTGG	2 cut(s)	1391, 2864
Vha464I	CTTAAG	1 cut(s)	2057
VpaK11BI	GGWCC	6 cut(s)	1106, 1331, 1671, 1786, 1874, 2315
VspI	ATTAAT	3 cut(s)	671, 1209, 1857
XapI	RAATTY	9 cut(s)	502, 709, 811, 820, 896, 1351, 1439, 2658, 2680
XcmI	CCANNNNNNNNNTGG	2 cut(s)	838, 2760
XmnI	GAANNNNTTC	2 cut(s)	1866, 2853
ZrmI	AGTACT	1 cut(s)	1527
Zsp2I	ATGCAT	1 cut(s)	1759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.