Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

3979010 .. 3983327

Gene Structure 4318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1059600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2973 bp

ATGAATTCCAGACCGTCCAAGAGAGAGTATTCAAACATGACAAAAAACCCTATGATCGAACCCGTCTTTCTTTTCTTCCTTTTCTTTAAGATTTTCTTCGTCGGGGCACAAAACACAACATTAATCCCAGTACATGTGGGAGTGGTTCTTGACTTGGACACCGGGTATGGGAAAGTGGGGATGAGCTGCATTGACATGGCCCTCGCCGACTTCTACGCCTCTCATGCAGGCTACAAAACCAGGCTGGTCCTACACAAAAGGGACTCCGCAGAAGATGTTGTTGTTGCAGCTACTGCAGCTCTAGACTTGATAAAAAATGAGAAAGTGCAAGCCATCATAGGGTTAGAATCATCAATGCAAGCCAGCTTTGTAATTGAGCTTGGAGACAAAGCTCAGGTGCCCATAATATCATTTTCTGCAACAAGCCCTTCTCTTCACGGTTCATACTTTTTCCGAATTGCGCAGAATGACTCATCCCAAGTTAAAGCCATTAGTAGTGTCATCCAGGCCTTTGGTTGGACTGAAGCAGTGCCCATCAGTGTTGACAATGAGTTCGGAAAGGGAGTAATACCTTACCTGACTACTGCTTTGCAAGCAGTTGGTACTCGTGTGCCCTACTGGAGTTTCATTCCTTCAACTGCCACGGATGAGGAAATTGTTGCAGAGCTTCGCAAGTTGATGTCAATGCGAACCAGGGTCTTTATAGTGCATATGTCACCTTATATTGGCTCTCAGTTTTTCTCAAAAGCAAAAGACTTTGGCATGATGGGTGAAGGCTATGTTTGGATAATGACAAATGGGATGACTAGCAGTTTTATTTCCTCGAGTTCTTCTGTCGACATAGACAACATGCAAGGGGTGTTGGGTTTAAAGACTTATGTTCCCATTACAAGGGAGCTTGAAAGTTTTAGAGCTAGATGGCAAACAAAATTTCGACAAGACAATCCAACTATCCCTAGTGTTAAATTAGATATTTTTGGATTGTGGGCGTATGATGCTGCTTGGGCACTAGCCATGGCAGTTGAGAAGGTTGGAACAACAAACTTCCACTTCCAGAAGATGAAAGATTCTGGCAATTCCACTGGTTTGGAGAGATTAAAGGTCTCTCAAAGTGGTCCTGAACTTGTCCGAGAATTATCAGGTACAAGATTCAGAGGTATTTCAGGATATTTCAGTCTGATTAATAGGCAACTACAATCATCTACTTTTCAGATAGTCAATGTGAACGATAATGGGGAAAGAGGTATTGGATATTGGACAGCCAAAAATGGACTCGTAAGAAACATTAAATCGAACAGAAATACAAGCAGACACTCTAATTCTAATGCCAGTCTTGGACCTATTATATGGCCTGGAGACACCACCTCGGTTCCAAGGGGTTGGCAGATTAGTACGAATGGGACCTTAAAGGTTCTAGTCCCGGCGAAGCTAATGTATGATGAATTGGTAAATGTAACGTATGATTCTAGAACTGGCACAACTAAAGTCACTGGATATTGCATAGATGTCTTTACCGCTGTAATAGAGGCATTGCCATACCCAGCTCCTTTTGAGTTTCATCCCTTTGCAAAGCCTAATGGTGAAAGAGCTGGAAGTTACAATGATATGTTCAATCAAGTAGCTCTCGGGAACTATGATGCTTTAGTTGGAGATATTACCATTAGAGCAAATAGATCCTTGTATGTTGACTTTACATTGCCGTACACAGAAGCGGGGGTATCAATGGTTGTGCCTGTCAAAGGAAACAATGGTGCGAAAAACACCTGGGTGTTCTTAAAGCCTTTGACCTGGGACCTTTGGGTAACCAGCTGCTGCTTTTTTATTTTCATTGGTTTTGTGGTCTGGTTTCTTGAACACCCAAAAAACAGAGACTTTCAGGGGCCTCCACATCACCAAATTGGCACAAGCTTTTGGTTCTCCTTCTCAACCATGTTTTTCATACATCGGGAGCTAGTGCTGAGCAACTTGGCTAGATTTGTAGTGATCGTATGGTGCTTTGTTGTTCTCATACTAACGCAAAGTTATACTGCCAGTTTAACGTCAATATTAACAGTCCAGCAGCTCCAACCAACCGTCACTGATGTAAACACGCTCATTAAGAATGGGGACAAGGTTGGCTACCTACGACGTTCTTTTATTTACGGGATTCTGAAGCAAGTAGGATTTCAGGATGATAAACTTAGGGCATATTATTCTAGAGAAGAATTGCATAAACTTCTTCAAGACGGGAATGAAAACGGAGGTATTTCTGCTGCTTTTGATGAAACGCCCTACATGAAACTTTTTGTTGCAACTTATTGTTCAAAATATACCATTGTCGAGCCAACATTCAAGCTAACATTCAAAACTGCTGGTTTTGCATTTGTCTTTCAAGAAGGTTCGCTTCTCACGCGTGATTTTTCAGATGCACTCACTCAAGTGCACGAGGGAGATAAAATGAAGGCCATCGAAGAAAAGTGGTTCAAGAAAAATGAAAGTTGTTCAAACTCCGACACCGTGGGAAGTTCCAACACTCTTGGTCTTGATAGCTTTTGGGGCCTCTTCATCGTTGCTGGTGTTGTTTCATCACTAGCTATCCTCATATTTATAGCTATGTTCCTCTATGAGCATGGCCACATCTTGATACGCGCAGATACAGAAGCCTCATTTTGGACAAGAATTCATGAAATATTAAAAGTATATTATGGAAAAGACCTGACTTCGGATATTTCTAGGAAGAGCACGCTGCAAGATAGTGATCATGGTATAGTTGCGGCTGAATCTTCACCAAACAGCAGATATCCCCCAAGGTCATCATCAAGCTCTCCCGACCCCACTGGACTGCACATTGGTCATCAAGAGCTGGTAGGAACTCCTAATTCTTCTGTGCATGGTGGTGATCTGAGTCCCAATGGTCAAGCAACCCAAGACAGTAGTACTCATGAATATGGTATTGAGTTAACTTCCTCCCCAAATGGTGAGAAACAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

991

Amino Acids

110.15

Weight (kDa)

6.76

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	43 - 347	1.2e-26	Periplasmic binding protein
ANF_receptor	PF01094	62 - 410	1e-80	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	488 - 578	5.8e-09	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	492 - 822	5.4e-10	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	596 - 853	2.2e-38	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	837
AccII	CGCG	2 cut(s)	2392, 2628
AciI	CCGC	4 cut(s)	267, 1515, 1712, 2753
AclWI	GGATC	1 cut(s)	1668
AcoI	YGGCCR	1 cut(s)	2611
AcsI	RAATTY	3 cut(s)	4, 929, 2658
AcuI	CTGAAG	2 cut(s)	543, 2171
AfaI	GTAC	6 cut(s)	132, 604, 1144, 1393, 1703, 2917
AfiI	CCNNNNNNNGG	8 cut(s)	168, 339, 516, 725, 891, 1739, 2649, 2701
AflIII	ACRYGT	2 cut(s)	133, 2390
AjnI	CCWGG	6 cut(s)	239, 504, 692, 1351, 1763, 1787
AjuI	GAANNNNNNNTTGG	2 cut(s)	1230, 1262
AleI	CACNNNNGTG	2 cut(s)	1766, 2417
Alw21I	GWGCWC	2 cut(s)	2424, 2723
Alw26I	GTCTC	4 cut(s)	378, 1108, 1350, 1863
Alw44I	GTGCAC	1 cut(s)	2420
AlwI	GGATC	1 cut(s)	1668
AlwNI	CAGNNNCTG	2 cut(s)	293, 1812
Ama87I	CYCGRG	2 cut(s)	823, 1625
AoxI	GGCC	7 cut(s)	198, 507, 1349, 1880, 2442, 2536, 2611
ApaLI	GTGCAC	1 cut(s)	2420
ApeKI	GCWGC	9 cut(s)	186, 287, 296, 998, 1809, 1812, 2059, 2252, 2725
ApoI	RAATTY	3 cut(s)	4, 929, 2658
ArsI	GACNNNNNNTTYG	4 cut(s)	536, 568, 571, 603
AseI	ATTAAT	2 cut(s)	122, 1182
AspLEI	GCGC	2 cut(s)	463, 2630
AspS9I	GGNCC	8 cut(s)	199, 247, 1115, 1337, 1401, 1792, 1880, 2536
AsuC2I	CCSGG	2 cut(s)	163, 1421
AsuHPI	GGTGA	7 cut(s)	708, 782, 1592, 1883, 2757, 2888, 2969
AvaI	CYCGRG	2 cut(s)	823, 1625
AvaII	GGWCC	5 cut(s)	247, 1115, 1337, 1401, 1792
BaeGI	GKGCMC	6 cut(s)	109, 402, 534, 615, 1009, 2424
BaeI	ACNNNNGTAYC	2 cut(s)	594, 627
BalI	TGGCCA	1 cut(s)	2613
BanI	GGYRCC	1 cut(s)	397
BauI	CACGAG	2 cut(s)	606, 2423
Bbv12I	GWGCWC	2 cut(s)	2424, 2723
BbvI	GCAGC	9 cut(s)	173, 299, 308, 985, 1796, 1799, 2071, 2239, 2712
BccI	CCATC	5 cut(s)	341, 542, 760, 912, 2453
BceAI	ACGGC	1 cut(s)	1684
BciT130I	CCWGG	6 cut(s)	241, 506, 694, 1353, 1765, 1789
BclI	TGATCA	1 cut(s)	2737
BcnI	CCSGG	2 cut(s)	163, 1421
BcoDI	GTCTC	4 cut(s)	378, 1108, 1350, 1863
BfmI	CTRYAG	1 cut(s)	294
BlpI	GCTNAGC	1 cut(s)	1958
BmcAI	AGTACT	1 cut(s)	2917
Bme1390I	CCNGG	8 cut(s)	163, 241, 506, 694, 1353, 1421, 1765, 1789
Bme18I	GGWCC	5 cut(s)	247, 1115, 1337, 1401, 1792
BmeT110I	CYCGRG	2 cut(s)	823, 1625
BmgT120I	GGNCC	8 cut(s)	199, 247, 1115, 1337, 1401, 1792, 1880, 2536
BmiI	GGNNCC	6 cut(s)	399, 1371, 1402, 1793, 1881, 2537
BmrFI	CCNGG	8 cut(s)	163, 241, 506, 694, 1353, 1421, 1765, 1789
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	985, 1627, 2395
BmuI	ACTGGG	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	640, 1374
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	1958
BpuEI	CTTGAG	1 cut(s)	2400
BpuMI	CCSGG	2 cut(s)	163, 1421
BsaBI	GATNNNNATC	1 cut(s)	2736
BsaI	GGTCTC	1 cut(s)	1108
BsaJI	CCNNGG	9 cut(s)	642, 693, 1014, 1365, 1373, 1764, 1788, 2496, 2786
Bsc4I	CCNNNNNNNGG	8 cut(s)	168, 339, 516, 725, 891, 1739, 2649, 2701
Bse1I	ACTGG	8 cut(s)	128, 623, 1087, 1329, 1477, 1495, 2031, 2821
Bse3DI	GCAATG	2 cut(s)	1529, 1694
Bse8I	GATNNNNATC	1 cut(s)	2736
BseBI	CCWGG	6 cut(s)	241, 506, 694, 1353, 1765, 1789
BseDI	CCNNGG	9 cut(s)	642, 693, 1014, 1365, 1373, 1764, 1788, 2496, 2786
BseGI	GGATG	7 cut(s)	186, 473, 501, 652, 807, 1558, 2176
BseJI	GATNNNNATC	1 cut(s)	2736
BseLI	CCNNNNNNNGG	8 cut(s)	168, 339, 516, 725, 891, 1739, 2649, 2701
BseMI	GCAATG	2 cut(s)	1529, 1694
BseMII	CTCAG	4 cut(s)	407, 746, 1949, 2873
BseNI	ACTGG	8 cut(s)	128, 623, 1087, 1329, 1477, 1495, 2031, 2821
BseSI	GKGCMC	6 cut(s)	109, 402, 534, 615, 1009, 2424
BseXI	GCAGC	9 cut(s)	173, 299, 308, 985, 1796, 1799, 2071, 2239, 2712
BseYI	CCCAGC	1 cut(s)	1540
BsgI	GTGCAG	1 cut(s)	2807
Bsh1236I	CGCG	2 cut(s)	2392, 2628
BshFI	GGCC	7 cut(s)	200, 509, 1351, 1882, 2444, 2538, 2613
BshNI	GGYRCC	1 cut(s)	397
BsiHKAI	GWGCWC	2 cut(s)	2424, 2723
BsiHKCI	CYCGRG	2 cut(s)	823, 1625
BsiSI	CCGG	2 cut(s)	162, 1421
BslFI	GGGAC	6 cut(s)	275, 1403, 1414, 1805, 2120, 2871
BslI	CCNNNNNNNGG	8 cut(s)	168, 339, 516, 725, 891, 1739, 2649, 2701
BsmAI	GTCTC	4 cut(s)	378, 1108, 1350, 1863
BsmFI	GGGAC	6 cut(s)	275, 1403, 1414, 1805, 2120, 2871
BsnI	GGCC	7 cut(s)	200, 509, 1351, 1882, 2444, 2538, 2613
Bso31I	GGTCTC	1 cut(s)	1108
BsoBI	CYCGRG	2 cut(s)	823, 1625
Bsp1286I	GDGCHC	7 cut(s)	109, 402, 534, 615, 1009, 2424, 2723
Bsp143I	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
Bsp1720I	GCTNAGC	1 cut(s)	1958
Bsp19I	CCATGG	1 cut(s)	1014
BspACI	CCGC	4 cut(s)	267, 1515, 1712, 2753
BspANI	GGCC	7 cut(s)	200, 509, 1351, 1882, 2444, 2538, 2613
BspCNI	CTCAG	4 cut(s)	406, 745, 1950, 2874
BspFNI	CGCG	2 cut(s)	2392, 2628
BspHI	TCATGA	2 cut(s)	2662, 2920
BspLI	GGNNCC	6 cut(s)	399, 1371, 1402, 1793, 1881, 2537
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	1668
BspQI	GCTCTTC	1 cut(s)	2711
BspT107I	GGYRCC	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	1108
BsrDI	GCAATG	2 cut(s)	1529, 1694
BsrI	ACTGG	8 cut(s)	128, 623, 1087, 1329, 1477, 1495, 2031, 2821
BssECI	CCNNGG	9 cut(s)	642, 693, 1014, 1365, 1373, 1764, 1788, 2496, 2786
BssMI	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
BssSI	CACGAG	2 cut(s)	606, 2423
BssT1I	CCWWGG	3 cut(s)	1014, 1373, 2786
Bst2BI	CACGAG	2 cut(s)	606, 2423
Bst2UI	CCWGG	6 cut(s)	241, 506, 694, 1353, 1765, 1789
Bst4CI	ACNGT	6 cut(s)	15, 440, 2053, 2074, 2497, 2912
Bst6I	CTCTTC	3 cut(s)	438, 2546, 2711
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	6 cut(s)	229, 330, 360, 364, 594, 2723
BstDEI	CTNAG	5 cut(s)	393, 732, 1958, 2180, 2882
BstDSI	CCRYGG	3 cut(s)	642, 1014, 2496
BstEII	GGTNACC	1 cut(s)	1801
BstENI	CCTNNNNNAGG	1 cut(s)	1737
BstF5I	GGATG	7 cut(s)	186, 473, 501, 652, 807, 1558, 2176
BstFNI	CGCG	2 cut(s)	2392, 2628
BstHHI	GCGC	2 cut(s)	463, 2630
BstKTI	GATC	5 cut(s)	57, 1676, 1986, 2740, 2881
BstMAI	GTCTC	4 cut(s)	378, 1108, 1350, 1863
BstMBI	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
BstMWI	GCNNNNNNNGC	9 cut(s)	224, 293, 296, 593, 995, 1004, 2357, 2389, 2535
BstNI	CCWGG	6 cut(s)	241, 506, 694, 1353, 1765, 1789
BstNSI	RCATGY	2 cut(s)	137, 853
BstPI	GGTNACC	1 cut(s)	1801
BstSCI	CCNGG	8 cut(s)	161, 239, 504, 692, 1351, 1419, 1763, 1787
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	6 cut(s)	109, 402, 534, 615, 1009, 2424
BstUI	CGCG	2 cut(s)	2392, 2628
BstV1I	GCAGC	9 cut(s)	173, 299, 308, 985, 1796, 1799, 2071, 2239, 2712
BstX2I	RGATCY	1 cut(s)	1673
BstXI	CCANNNNNNTGG	3 cut(s)	512, 1087, 1380
BstYI	RGATCY	1 cut(s)	1673
BsuRI	GGCC	7 cut(s)	200, 509, 1351, 1882, 2444, 2538, 2613
BtgI	CCRYGG	3 cut(s)	642, 1014, 2496
BtsCI	GGATG	7 cut(s)	186, 473, 501, 652, 807, 1558, 2176
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	6 cut(s)	534, 544, 1080, 1488, 2076, 2814
Cac8I	GCNNGC	6 cut(s)	229, 330, 360, 364, 594, 2723
CaiI	CAGNNNCTG	2 cut(s)	293, 1812
CciI	TCATGA	2 cut(s)	2662, 2920
CfoI	GCGC	2 cut(s)	463, 2630
Cfr13I	GGNCC	8 cut(s)	199, 247, 1115, 1337, 1401, 1792, 1880, 2536
Csp6I	GTAC	6 cut(s)	131, 603, 1143, 1392, 1702, 2916
CviQI	GTAC	6 cut(s)	131, 603, 1143, 1392, 1702, 2916
DdeI	CTNAG	5 cut(s)	393, 732, 1958, 2180, 2882
DpnI	GATC	5 cut(s)	56, 1675, 1985, 2739, 2880
DpnII	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
DraI	TTTAAA	1 cut(s)	870
EaeI	YGGCCR	1 cut(s)	2611
Eam1104I	CTCTTC	3 cut(s)	438, 2546, 2711
EarI	CTCTTC	3 cut(s)	438, 2546, 2711
Eco130I	CCWWGG	3 cut(s)	1014, 1373, 2786
Eco147I	AGGCCT	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	1108
Eco32I	GATATC	1 cut(s)	2780
Eco47I	GGWCC	5 cut(s)	247, 1115, 1337, 1401, 1792
Eco57I	CTGAAG	2 cut(s)	543, 2171
Eco88I	CYCGRG	2 cut(s)	823, 1625
Eco91I	GGTNACC	1 cut(s)	1801
EcoNI	CCTNNNNNAGG	1 cut(s)	1737
EcoO109I	RGGNCCY	4 cut(s)	1401, 1792, 1880, 2536
EcoO65I	GGTNACC	1 cut(s)	1801
EcoRI	GAATTC	2 cut(s)	4, 2658
EcoRII	CCWGG	6 cut(s)	239, 504, 692, 1351, 1763, 1787
EcoRV	GATATC	1 cut(s)	2780
EcoT14I	CCWWGG	3 cut(s)	1014, 1373, 2786
ErhI	CCWWGG	3 cut(s)	1014, 1373, 2786
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 2367, 2399
FaqI	GGGAC	6 cut(s)	275, 1403, 1414, 1805, 2120, 2871
FauI	CCCGC	1 cut(s)	1705
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	2737
FblI	GTMKAC	1 cut(s)	837
FokI	GGATG	7 cut(s)	193, 460, 488, 659, 814, 1545, 2183
FspI	TGCGCA	1 cut(s)	462
GlaI	GCGC	2 cut(s)	462, 2629
GsaI	CCCAGC	1 cut(s)	1544
GsuI	CTGGAG	2 cut(s)	640, 1374
HaeIII	GGCC	7 cut(s)	200, 509, 1351, 1882, 2444, 2538, 2613
HapII	CCGG	2 cut(s)	162, 1421
HhaI	GCGC	2 cut(s)	463, 2630
Hin6I	GCGC	2 cut(s)	461, 2628
HinP1I	GCGC	2 cut(s)	461, 2628
HincII	GTYRAC	4 cut(s)	544, 838, 1687, 2940
HindII	GTYRAC	4 cut(s)	544, 838, 1687, 2940
HindIII	AAGCTT	1 cut(s)	1906
HpaI	GTTAAC	1 cut(s)	2940
HpaII	CCGG	2 cut(s)	162, 1421
HphI	GGTGA	7 cut(s)	708, 782, 1592, 1883, 2757, 2888, 2969
Hpy166II	GTNNAC	8 cut(s)	544, 838, 1225, 1687, 1704, 2086, 2422, 2940
Hpy8I	GTNNAC	8 cut(s)	544, 838, 1225, 1687, 1704, 2086, 2422, 2940
Hpy99I	CGWCG	2 cut(s)	104, 2130
HpyAV	CCTTC	7 cut(s)	438, 642, 767, 1021, 1930, 2369, 2434
HpyCH4III	ACNGT	6 cut(s)	15, 440, 2053, 2074, 2497, 2912
HpyCH4IV	ACGT	3 cut(s)	1457, 2039, 2128
HpyF10VI	GCNNNNNNNGC	9 cut(s)	224, 293, 296, 593, 995, 1004, 2357, 2389, 2535
HpyF3I	CTNAG	5 cut(s)	393, 732, 1958, 2180, 2882
HpySE526I	ACGT	3 cut(s)	1457, 2039, 2128
HspAI	GCGC	2 cut(s)	461, 2628
Ksp22I	TGATCA	1 cut(s)	2737
KspAI	GTTAAC	1 cut(s)	2940
Kzo9I	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
LguI	GCTCTTC	1 cut(s)	2711
LmnI	GCTCC	4 cut(s)	895, 1549, 1948, 2067
Lsp1109I	GCAGC	9 cut(s)	173, 299, 308, 985, 1796, 1799, 2071, 2239, 2712
LweI	GCATC	3 cut(s)	985, 1627, 2395
MaeII	ACGT	3 cut(s)	1457, 2039, 2128
MaeIII	GTNAC	6 cut(s)	714, 1453, 1486, 1595, 1801, 2074
MalI	GATC	5 cut(s)	56, 1675, 1985, 2739, 2880
MboI	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
MflI	RGATCY	1 cut(s)	1673
MhlI	GDGCHC	7 cut(s)	109, 402, 534, 615, 1009, 2424, 2723
MlsI	TGGCCA	1 cut(s)	2613
MluI	ACGCGT	1 cut(s)	2390
MluNI	TGGCCA	1 cut(s)	2613
MlyI	GAGTC	4 cut(s)	257, 464, 1266, 2893
MmeI	TCCRAC	7 cut(s)	497, 971, 1012, 1627, 2089, 2514, 2532
Mox20I	TGGCCA	1 cut(s)	2613
MscI	TGGCCA	1 cut(s)	2613
MslI	CAYNNNNRTG	5 cut(s)	194, 1766, 2417, 2874, 2925
Msp20I	TGGCCA	1 cut(s)	2613
MspA1I	CMGCKG	2 cut(s)	1517, 1809
MspI	CCGG	2 cut(s)	162, 1421
MspR9I	CCNGG	8 cut(s)	163, 241, 506, 694, 1353, 1421, 1765, 1789
MvaI	CCWGG	6 cut(s)	241, 506, 694, 1353, 1765, 1789
MvnI	CGCG	2 cut(s)	2392, 2628
MwoI	GCNNNNNNNGC	9 cut(s)	224, 293, 296, 593, 995, 1004, 2357, 2389, 2535
NciI	CCSGG	2 cut(s)	163, 1421
NcoI	CCATGG	1 cut(s)	1014
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
NlaIV	GGNNCC	6 cut(s)	399, 1371, 1402, 1793, 1881, 2537
NmuCI	GTSAC	3 cut(s)	714, 1486, 2074
NsbI	TGCGCA	1 cut(s)	462
NspI	RCATGY	2 cut(s)	137, 853
OliI	CACNNNNGTG	2 cut(s)	1766, 2417
PaeR7I	CTCGAG	1 cut(s)	823
PagI	TCATGA	2 cut(s)	2662, 2920
PceI	AGGCCT	1 cut(s)	509
PciI	ACATGT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	2711
PfeI	GAWTC	6 cut(s)	347, 1067, 1149, 1463, 2146, 2759
PleI	GAGTC	4 cut(s)	257, 464, 1266, 2892
PpsI	GAGTC	4 cut(s)	257, 464, 1266, 2892
PpuMI	RGGWCCY	2 cut(s)	1401, 1792
PscI	ACATGT	1 cut(s)	133
PshBI	ATTAAT	2 cut(s)	122, 1182
Psp5II	RGGWCCY	2 cut(s)	1401, 1792
Psp6I	CCWGG	6 cut(s)	239, 504, 692, 1351, 1763, 1787
PspEI	GGTNACC	1 cut(s)	1801
PspFI	CCCAGC	1 cut(s)	1540
PspGI	CCWGG	6 cut(s)	239, 504, 692, 1351, 1763, 1787
PspN4I	GGNNCC	6 cut(s)	399, 1371, 1402, 1793, 1881, 2537
PspPI	GGNCC	8 cut(s)	199, 247, 1115, 1337, 1401, 1792, 1880, 2536
PspPPI	RGGWCCY	2 cut(s)	1401, 1792
PspXI	VCTCGAGB	1 cut(s)	823
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	2 cut(s)	293, 1812
PsuI	RGATCY	1 cut(s)	1673
PvuII	CAGCTG	1 cut(s)	1809
RsaI	GTAC	6 cut(s)	132, 604, 1144, 1393, 1703, 2917
RsaNI	GTAC	6 cut(s)	131, 603, 1143, 1392, 1702, 2916
RseI	CAYNNNNRTG	5 cut(s)	194, 1766, 2417, 2874, 2925
SalI	GTCGAC	1 cut(s)	836
SapI	GCTCTTC	1 cut(s)	2711
Sau3AI	GATC	5 cut(s)	54, 1673, 1983, 2737, 2878
Sau96I	GGNCC	8 cut(s)	199, 247, 1115, 1337, 1401, 1792, 1880, 2536
ScaI	AGTACT	1 cut(s)	2917
SchI	GAGTC	4 cut(s)	257, 464, 1266, 2893
ScrFI	CCNGG	8 cut(s)	163, 241, 506, 694, 1353, 1421, 1765, 1789
SduI	GDGCHC	7 cut(s)	109, 402, 534, 615, 1009, 2424, 2723
SfaNI	GCATC	3 cut(s)	985, 1627, 2395
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	823
SinI	GGWCC	5 cut(s)	247, 1115, 1337, 1401, 1792
SlaI	CTCGAG	1 cut(s)	823
SmiMI	CAYNNNNRTG	5 cut(s)	194, 1766, 2417, 2874, 2925
SmlI	CTYRAG	2 cut(s)	823, 2415
SmoI	CTYRAG	2 cut(s)	823, 2415
SseBI	AGGCCT	1 cut(s)	509
SsiI	CCGC	4 cut(s)	267, 1515, 1712, 2753
SspI	AATATT	2 cut(s)	2046, 2670
StuI	AGGCCT	1 cut(s)	509
StyD4I	CCNGG	8 cut(s)	161, 239, 504, 692, 1351, 1419, 1763, 1787
StyI	CCWWGG	3 cut(s)	1014, 1373, 2786
TaaI	ACNGT	6 cut(s)	15, 440, 2053, 2074, 2497, 2912
TaiI	ACGT	3 cut(s)	1460, 2042, 2131
TaqI	TCGA	7 cut(s)	57, 824, 837, 934, 1292, 2319, 2448
TatI	WGTACW	2 cut(s)	130, 2915
TauI	GCSGC	1 cut(s)	2756
TfiI	GAWTC	6 cut(s)	347, 1067, 1149, 1463, 2146, 2759
TscAI	CASTG	6 cut(s)	534, 544, 1087, 1495, 2083, 2821
TseFI	GTSAC	3 cut(s)	714, 1486, 2074
TseI	GCWGC	9 cut(s)	186, 287, 296, 998, 1809, 1812, 2059, 2252, 2725
Tsp45I	GTSAC	3 cut(s)	714, 1486, 2074
TspGWI	ACGGA	2 cut(s)	659, 2253
TspRI	CASTG	6 cut(s)	534, 544, 1087, 1495, 2083, 2821
VneI	GTGCAC	1 cut(s)	2420
VpaK11BI	GGWCC	5 cut(s)	247, 1115, 1337, 1401, 1792
VspI	ATTAAT	2 cut(s)	122, 1182
XagI	CCTNNNNNAGG	1 cut(s)	1737
XapI	RAATTY	3 cut(s)	4, 929, 2658
XbaI	TCTAGA	3 cut(s)	301, 1466, 2195
XceI	RCATGY	2 cut(s)	137, 853
XhoI	CTCGAG	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	837
ZrmI	AGTACT	1 cut(s)	2917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.