Rorug06G0049700

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
6618903 .. 6619463
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0049700.1

Sequence Viewer

Length: 561 bp
ATGTTTACTACTAATAGTGCATATTTTGTGGCTCGTGATATTTCTCTTAACGGAGTTGTGCATTCTCCTCCAATTGACAGCTTCCAAAGTTTGTTGAAAACTATTTGGAAGGCTAAAGTTGCGAAGAAAATGGCCATTAGTGTGTGGAAAGCTTGTCAAAATATTCTCCCCACTAGAGAGAGACTTCTAGCCAAAGGATATGAGGGGGAGACAGTGTGTGTACTATGCAATTGCCCTCCTGAATCTGTAGGGCATGTACTAGCTGAATGTCCCATTGCAAAAGAAGTGTTGGATTCTATCTCCTTGCAGGTTACTGTTCCTTTTTTCCCGATTTTTATTTTCAAAGAATGGATGTTGGAATCTGCAACCAAGACTTCTCTACAGCACTTTGAAAAGTTTATGATGTTCTTTTGGGCTATCTGGGAAAACTGGAATGCAAATTTGTGGGAGGATACGACCAAGCTTTCAGCTGATATAGCTATTATTACATTGCGATGGTTTTTGAAGAGGACAAGTTGTTACATATTTCTGCCAGGCCTACAGTCAGTGGTAGAAAGATAG

Protein Analysis

186

Amino Acids

21.36

Weight (kDa)

8.2

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 30 - 96 1.3e-15 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 2 cut(s) 222, 258
AgsI TTSAA 4 cut(s) 97, 343, 392, 505
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 6 cut(s) 81, 152, 263, 463, 470, 479
AluI AGCT 6 cut(s) 81, 152, 263, 463, 470, 479
Alw26I GTCTC 2 cut(s) 175, 203
AoxI GGCC 2 cut(s) 132, 535
ApoI RAATTY 1 cut(s) 439
BalI TGGCCA 1 cut(s) 134
BauI CACGAG 1 cut(s) 33
BccI CCATC 1 cut(s) 489
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 175, 203
BfaI CTAG 3 cut(s) 174, 188, 260
BfmI CTRYAG 3 cut(s) 246, 380, 539
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 534
BmrFI CCNGG 1 cut(s) 534
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 2 cut(s) 273, 488
BseBI CCWGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 357
BseMI GCAATG 2 cut(s) 273, 488
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 57
BshFI GGCC 2 cut(s) 134, 537
BslFI GGGAC 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 175, 203
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 2 cut(s) 61, 439
BsnI GGCC 2 cut(s) 134, 537
BspANI GGCC 2 cut(s) 134, 537
BspMI ACCTGC 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 273, 488
BsrI ACTGG 1 cut(s) 434
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 214, 316, 543
Bst6I CTCTTC 1 cut(s) 500
BstF5I GGATG 1 cut(s) 357
BstMAI GTCTC 2 cut(s) 175, 203
BstMWI GCNNNNNNNGC 2 cut(s) 119, 476
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 3 cut(s) 246, 380, 539
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 2 cut(s) 134, 537
BtgZI GCGATG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 219, 552
BveI ACCTGC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 221, 257
CviAII CATG 1 cut(s) 254
CviQI GTAC 2 cut(s) 221, 257
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
Eco147I AGGCCT 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 532
FaeI CATG 1 cut(s) 257
FaiI YATR 7 cut(s) 22, 201, 226, 255, 401, 476, 524
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 253
FokI GGATG 1 cut(s) 364
FspBI CTAG 3 cut(s) 174, 188, 260
HaeIII GGCC 2 cut(s) 134, 537
Hin1II CATG 1 cut(s) 257
HindIII AAGCTT 2 cut(s) 150, 461
HinfI GANTC 3 cut(s) 242, 293, 359
Hpy166II GTNNAC 2 cut(s) 6, 221
Hpy188III TCNNGA 3 cut(s) 35, 239, 328
Hpy8I GTNNAC 2 cut(s) 6, 221
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 3 cut(s) 214, 316, 543
HpyCH4V TGCA 7 cut(s) 20, 61, 228, 278, 307, 365, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 476
Hsp92II CATG 1 cut(s) 257
LpnPI CCDG 6 cut(s) 252, 293, 406, 415, 519, 546
MaeI CTAG 3 cut(s) 174, 188, 260
MaeIII GTNAC 2 cut(s) 310, 518
MboII GAAGA 2 cut(s) 136, 517
MfeI CAATTG 2 cut(s) 72, 229
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 3 cut(s) 72, 229, 439
MluNI TGGCCA 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 270, 336
MnlI CCTC 5 cut(s) 78, 196, 246, 442, 501
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 140, 493
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 534
MunI CAATTG 2 cut(s) 72, 229
Mva1269I GAATGC 2 cut(s) 61, 439
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 119, 476
NlaIII CATG 1 cut(s) 257
NspI RCATGY 1 cut(s) 257
PceI AGGCCT 1 cut(s) 537
PctI GAATGC 2 cut(s) 61, 439
PfeI GAWTC 3 cut(s) 242, 293, 359
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 222, 258
RsaNI GTAC 2 cut(s) 221, 257
RseI CAYNNNNRTG 2 cut(s) 140, 493
SaqAI TTAA 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 534
SetI ASST 7 cut(s) 83, 154, 265, 312, 465, 472, 481
SfcI CTRYAG 3 cut(s) 246, 380, 539
SmiMI CAYNNNNRTG 2 cut(s) 140, 493
Sse9I AATT 3 cut(s) 72, 229, 439
SseBI AGGCCT 1 cut(s) 537
SspI AATATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 174, 188, 260
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 3 cut(s) 214, 316, 543
TasI AATT 3 cut(s) 72, 229, 439
TatI WGTACW 2 cut(s) 220, 256
TfiI GAWTC 3 cut(s) 242, 293, 359
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 219, 552
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 219, 552
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 257
XspI CTAG 3 cut(s) 174, 188, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.