Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

26222243 .. 26244884

Gene Structure 22642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG263900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2967 bp

ATGAGAACTCCGGATGATTTCTTTAAAAGACTTTCCAAAGAGATTCAATTCAACATGAATGGGATTGAAGTTACAAATGATTTTGGAGAGATGGAGAGCAGAAAAATTGCAGTTGATAATGTACACCTGAGGAATTCCTTGGCTGCTGCCCAAAACACAATGATCCCAGTAGATGTGGGTATGATCCTTGACTTTGATTCTTTGTTTGGGAAGATTGGGCTGAGCTGCGTCAACATGGCTCTATCCGACTTCTATGCCTCTCATGCTTACTATAAAACCAGGCTGGTACTACACACAAGGGACTCCATGAGAGATGCTGTTGTTGAAGCTGCTGCAGCTCTAGACTTGATAAAAAATATTGAAGTGAAAGCTATCATCATAGGGGCGGAATCATCAATGAAAGCCAACTTTGTAATTGATCTTGGAGATAAAGCTAAGGTGCCTATAATCTCATTTTCGACGGCAAATCCTTCCCTGACTTCTTTTCAGCGTTCATATTTTTTCCAAGTTGCAAAGAATGACTCATCTCAAGTGAAAGCCATAAGTGCCATAATTCAATCTTTTGGCTGGAATGAAGCAGTGCCCATTTTTGTCGACGATGAGTTTTGGGAGGGTACATTACCTTACATGATTAATGTTCTACAAGAAGTTGGTGCTCGTATTCCCTACTGCAGTGTCATTCCTCTAATGGCCACTGATGACCAAATTGTTGTGAAGCTTCAACATCTCATGACAATGAAAACAAGGGTGTTCATTGTACACATGTTGCCTTCTCTTAGCTCCCGGCTTTTTGCCAAGGCAAAAGAGATGGGCATGATGGGTGAAGGTTATGTTTGGATAATGACAGATGGAATGACCAACTCTTTTGGATCCATAAATTCTTCTGTCACAGATAACATGCAAGGTGTGTTAGCATTAAGAACTTATGTTCCAAATACACAAGAGCTTGAAAATTTCAGGGTCCGATGGCACAGAAAATTCCAAATAGAGAATCCAACTATCCTTAATGTTAGATCAGATGATATTTTTGGACTGTTGGCTTATGATGCTGCTTGGGCACTAGCCATGGCAGTTGAGAAGGTTATAAATTCTACAAGCTTCAACTTTCAAAAGGTGAACATTTCTGGCAGTTCCACTGATCTAGAACGATTAGGGGTCTCTGAAAGTGGTTCTGAACTCGTCCAAGCACTATCAACGACAAAATTCAGAGGCCTTTCTGGAAATTTCAGTCTTCTTAATGGACAACTACAGTCTTCAATTTTTGAGATAATCAATGTGAATGGTAATGGGGTAAGAGGAGTTGGATATTGGACACCCAAAAATGGACTTGTTAGAAATTTAAATTCAGCAAGCAGCGGATATTCTAGTTCTACTTCCAATCCCAGTGACCTTGGACTTATTATATGGCCCGGAGACACCATCACCATTCCAAAAGGTTGGCAGATTCCTAACCATGGGAATAAGTTGAAAATTCTAGTTCCAGTGAAGCATGGGTTTAAAGAATTTGTAAATGTGACAGTGGGTCCTACAACTAACACAACCATGGTCACTGGATATTGCATAGACATTTTTAAAGCAGTAATCGAAGAATTACCATACGCTGTTTCTTATGAATTTTATCCCTTTGTAAAGCCTAATGGTGAACCAGCTGGCAGCTACGAGGATTTGATCTCTCAAGTGTTTCTTGGGAACTATGATGCAGCAGTTGGAGATATAACCATTAGAGCAAATAGGTCATCATTGGTTGACTTTACATTGCCATACACAGAATCTGGAGTATCAATGGTGGTGCCTATCAAAGTGAAGAAAAGTAGGCAAAGTGCATTGGTGTTCTTGAAGCCTTTTACTTGGGACCTTTGGGTAACAAGCTGTTGCTTTTTCTTTGTCATTGGGTTCGTGATCTGGGTTCTTGAACACCGATTGAATGAAGATTTTCGTGGGCCTCCGTCACACCAGATTGGTACAACCTTTTGGTTTTCTTTCTCAACCATGGTTTTTGCACAACGAGAGAAAGTAGTAAGCAACTTAGCTAGGACTGTGGTGATCGTGTGGTGCTTTGTTGTCCTCATACTGACACAAAGTTATACTGCCAGTTTGACATCACTTTTAACAGTTCAACAGCTCCAACCAACCGTTGCTAATGTAGGTCTGCTCCTCAAGAATGGAGACTTCGTTGGTTTCCAAGAAGGTTCTTCTGTACAGAACTTTTTGACAAATGAACTGGGATTTCATGTGGAAAAGCTTAGGGCATATAGGTCTGGAGAAGATCTGGCTCAACTGTTTGAGAAAGGGGCAATTTCTGCTGCTTTTGATGAAACCCCTTTCATGAACCTTTTCCTTTCAACTTATTGCTCAAAATATACCATGGTTGAGCCAATACTATCCAAAACTGGCAGCGGCTTTGCATTTGCCTTTACGAAAGGTGTGCCTCTTACACTTGATGTTTCAAGGATGATCACTCATTTGCAAGAGGGAGGTAAAATGAAGACTGTCATGGACAAGTGGTTCAAGAAAGAAGCAAGTTGTACATACCCCAGCATAGACTCTAATTCCAACAGTCCTCTTAGCCTTGATAGCCTTTGGGGTCTTTTCCTTATTGTTGGAGTTACTTCGTCATCAGCTCTTCTGATACATGTAGCTATGGTCTTCTATCAGAATCGGCACGTCTTGATACCCTCGGATCCAGAACTCTCTCTTTGGAGGAAAATGAGTCTCATATTACGGATATTCGACCAAAGAGACCTCCCTTCGCATACTTTTTGGCGCAGGGATCAACAAGATAATGCTCAAGCTAGAGCTTCAGTTGATTCCTCACCGAAAATCATAACCAATAGCTTGCCAAGGCCATCAGATTTTTCACACCACGCAAGTTCAGATATTACTGAATTTGAAATGGAGGAAACACCTTCTAGTTCTACCAACGGGGATTTGAATCCCAGTGGTCAAGCCCTCCAAGAGACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

988

Amino Acids

109.98

Weight (kDa)

6.0

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	56 - 408	7.8e-13	Periplasmic binding protein
ANF_receptor	PF01094	76 - 429	1.4e-77	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	510 - 597	1.4e-10	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	514 - 837	5.7e-10	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	616 - 869	1.4e-36	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1085
AccB1I	GGYRCC	2 cut(s)	439, 1789
AccI	GTMKAC	1 cut(s)	594
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	3 cut(s)	386, 1356, 2397
AclWI	GGATC	7 cut(s)	157, 178, 864, 877, 2675, 2688, 2778
AcoI	YGGCCR	1 cut(s)	690
AcuI	CTGAAG	1 cut(s)	2784
AfaI	GTAC	7 cut(s)	123, 288, 616, 759, 1963, 2199, 2527
AfiI	CCNNNNNNNGG	2 cut(s)	1322, 1454
AflIII	ACRYGT	2 cut(s)	762, 2632
AhdI	GACNNNNNGTC	1 cut(s)	1521
AjiI	CACGTC	1 cut(s)	2665
AjnI	CCWGG	1 cut(s)	278
AloI	GAACNNNNNNTCC	4 cut(s)	913, 945, 2489, 2521
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	6 cut(s)	1162, 1407, 2160, 2717, 2733, 2951
AlwI	GGATC	7 cut(s)	157, 178, 864, 877, 2675, 2688, 2778
AlwNI	CAGNNNCTG	1 cut(s)	1772
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	5 cut(s)	690, 1210, 1406, 1940, 2843
AseI	ATTAAT	1 cut(s)	633
Asp700I	GAANNNNTTC	2 cut(s)	1932, 2333
AspLEI	GCGC	1 cut(s)	2766
AspS9I	GGNCC	5 cut(s)	961, 1407, 1523, 1852, 1940
AsuC2I	CCSGG	2 cut(s)	784, 1410
AsuHPI	GGTGA	6 cut(s)	833, 1126, 1414, 1652, 2053, 2805
AvaII	GGWCC	3 cut(s)	961, 1523, 1852
AxyI	CCTNAGG	1 cut(s)	128
BaeGI	GKGCMC	2 cut(s)	585, 1060
BalI	TGGCCA	1 cut(s)	692
BamHI	GGATCC	2 cut(s)	869, 2680
BanI	GGYRCC	2 cut(s)	439, 1789
BbsI	GAAGAC	4 cut(s)	1223, 1245, 2492, 2638
Bbv12I	GWGCWC	1 cut(s)	658
BccI	CCATC	7 cut(s)	85, 802, 811, 842, 960, 1427, 2854
BceAI	ACGGC	1 cut(s)	477
BcgI	CGANNNNNNTGC	4 cut(s)	236, 270, 2407, 2441
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	2454
BcnI	CCSGG	2 cut(s)	784, 1410
BcoDI	GTCTC	6 cut(s)	1162, 1407, 2160, 2717, 2733, 2951
BfaI	CTAG	8 cut(s)	341, 1061, 1142, 1365, 1475, 2031, 2793, 2910
BfmI	CTRYAG	3 cut(s)	333, 670, 1247
BglII	AGATCT	1 cut(s)	2266
BlpI	GCTNAGC	1 cut(s)	221
Bme1390I	CCNGG	3 cut(s)	280, 784, 1410
Bme18I	GGWCC	3 cut(s)	961, 1523, 1852
BmeRI	GACNNNNNGTC	1 cut(s)	1521
BmgBI	CACGTC	1 cut(s)	2665
BmgT120I	GGNCC	5 cut(s)	961, 1407, 1523, 1852, 1940
BmiI	GGNNCC	7 cut(s)	441, 871, 962, 1524, 1791, 1853, 2682
BmrFI	CCNGG	3 cut(s)	280, 784, 1410
BmrI	ACTGGG	4 cut(s)	161, 1377, 2231, 2931
BmsI	GCATC	3 cut(s)	304, 1036, 1687
BmuI	ACTGGG	4 cut(s)	161, 1377, 2231, 2931
BpiI	GAAGAC	4 cut(s)	1223, 1245, 2492, 2638
BpmI	CTGGAG	2 cut(s)	1794, 2280
Bpu10I	CCTNAGC	2 cut(s)	435, 2243
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	4 cut(s)	513, 1659, 2141, 2772
BpuMI	CCSGG	2 cut(s)	784, 1410
BsaBI	GATNNNNATC	1 cut(s)	2931
BsaI	GGTCTC	2 cut(s)	1162, 2733
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	2157, 2187
Bsc4I	CCNNNNNNNGG	2 cut(s)	1322, 1454
Bse1I	ACTGG	8 cut(s)	167, 1383, 1481, 1555, 2091, 2226, 2395, 2937
Bse21I	CCTNAGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	1754
Bse8I	GATNNNNATC	1 cut(s)	2931
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	19, 2457
BseJI	GATNNNNATC	1 cut(s)	2931
BseLI	CCNNNNNNNGG	2 cut(s)	1322, 1454
BseMI	GCAATG	1 cut(s)	1754
BseMII	CTCAG	2 cut(s)	119, 212
BseNI	ACTGG	8 cut(s)	167, 1383, 1481, 1555, 2091, 2226, 2395, 2937
BseRI	GAGGAG	2 cut(s)	1311, 2144
BseSI	GKGCMC	2 cut(s)	585, 1060
BseYI	CCCAGC	1 cut(s)	2534
BshFI	GGCC	5 cut(s)	692, 1212, 1408, 1942, 2845
BshNI	GGYRCC	2 cut(s)	439, 1789
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	3 cut(s)	11, 784, 1410
BslFI	GGGAC	2 cut(s)	314, 1865
BslI	CCNNNNNNNGG	2 cut(s)	1322, 1454
BsmAI	GTCTC	6 cut(s)	1162, 1407, 2160, 2717, 2733, 2951
BsmFI	GGGAC	2 cut(s)	314, 1865
BsnI	GGCC	5 cut(s)	692, 1212, 1408, 1942, 2845
Bso31I	GGTCTC	2 cut(s)	1162, 2733
Bsp1286I	GDGCHC	3 cut(s)	585, 658, 1060
Bsp13I	TCCGGA	1 cut(s)	10
Bsp1407I	TGTACA	4 cut(s)	121, 757, 2197, 2525
Bsp1720I	GCTNAGC	1 cut(s)	221
Bsp19I	CCATGG	5 cut(s)	1065, 1453, 1542, 1989, 2364
BspACI	CCGC	3 cut(s)	386, 1356, 2397
BspANI	GGCC	5 cut(s)	692, 1212, 1408, 1942, 2845
BspCNI	CTCAG	2 cut(s)	120, 213
BspEI	TCCGGA	1 cut(s)	10
BspHI	TCATGA	2 cut(s)	729, 2325
BspLI	GGNNCC	7 cut(s)	441, 871, 962, 1524, 1791, 1853, 2682
BspMAI	CTGCAG	2 cut(s)	337, 674
BspPI	GGATC	7 cut(s)	157, 178, 864, 877, 2675, 2688, 2778
BspQI	GCTCTTC	1 cut(s)	2628
BspT107I	GGYRCC	2 cut(s)	439, 1789
BspTNI	GGTCTC	2 cut(s)	1162, 2733
BsrDI	GCAATG	1 cut(s)	1754
BsrGI	TGTACA	4 cut(s)	121, 757, 2197, 2525
BsrI	ACTGG	8 cut(s)	167, 1383, 1481, 1555, 2091, 2226, 2395, 2937
BssT1I	CCWWGG	9 cut(s)	138, 795, 1065, 1390, 1453, 1542, 1989, 2364, 2840
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	9 cut(s)	1035, 1251, 1519, 2038, 2113, 2134, 2280, 2491, 2558
Bst6I	CTCTTC	1 cut(s)	2628
BstAPI	GCANNNNNTGC	1 cut(s)	2300
BstAUI	TGTACA	4 cut(s)	121, 757, 2197, 2525
BstC8I	GCNNGC	3 cut(s)	1351, 1651, 2837
BstDEI	CTNAG	7 cut(s)	128, 221, 435, 776, 2026, 2243, 2564
BstDSI	CCRYGG	5 cut(s)	1065, 1453, 1542, 1989, 2364
BstF5I	GGATG	2 cut(s)	19, 2457
BstHHI	GCGC	1 cut(s)	2766
BstMAI	GTCTC	6 cut(s)	1162, 1407, 2160, 2717, 2733, 2951
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 335, 545, 1046, 1055, 2300, 2574
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	3 cut(s)	766, 901, 2636
BstSCI	CCNGG	3 cut(s)	278, 782, 1408
BstSFI	CTRYAG	3 cut(s)	333, 670, 1247
BstSLI	GKGCMC	2 cut(s)	585, 1060
BstV2I	GAAGAC	4 cut(s)	1223, 1245, 2492, 2638
BstX2I	RGATCY	3 cut(s)	869, 2266, 2680
BstXI	CCANNNNNNTGG	1 cut(s)	1437
BstYI	RGATCY	3 cut(s)	869, 2266, 2680
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	5 cut(s)	692, 1212, 1408, 1942, 2845
BtgI	CCRYGG	5 cut(s)	1065, 1453, 1542, 1989, 2364
BtrI	CACGTC	1 cut(s)	2665
BtsCI	GGATG	2 cut(s)	19, 2457
BtsI	GCAGTG	2 cut(s)	585, 679
BtsIMutI	CAGTG	9 cut(s)	585, 679, 693, 1134, 1390, 1488, 1524, 1548, 2944
Cac8I	GCNNGC	3 cut(s)	1351, 1651, 2837
CaiI	CAGNNNCTG	1 cut(s)	1772
CciI	TCATGA	2 cut(s)	729, 2325
CfoI	GCGC	1 cut(s)	2766
Cfr13I	GGNCC	5 cut(s)	961, 1407, 1523, 1852, 1940
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	7 cut(s)	122, 287, 615, 758, 1962, 2198, 2526
CviQI	GTAC	7 cut(s)	122, 287, 615, 758, 1962, 2198, 2526
DdeI	CTNAG	7 cut(s)	128, 221, 435, 776, 2026, 2243, 2564
DraI	TTTAAA	4 cut(s)	25, 1341, 1498, 1573
DriI	GACNNNNNGTC	1 cut(s)	1521
EaeI	YGGCCR	1 cut(s)	690
Eam1104I	CTCTTC	1 cut(s)	2628
Eam1105I	GACNNNNNGTC	1 cut(s)	1521
EarI	CTCTTC	1 cut(s)	2628
EciI	GGCGGA	1 cut(s)	401
Eco130I	CCWWGG	9 cut(s)	138, 795, 1065, 1390, 1453, 1542, 1989, 2364, 2840
Eco147I	AGGCCT	1 cut(s)	1212
Eco31I	GGTCTC	2 cut(s)	1162, 2733
Eco47I	GGWCC	3 cut(s)	961, 1523, 1852
Eco57I	CTGAAG	1 cut(s)	2784
Eco81I	CCTNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	1523, 1852
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	9 cut(s)	138, 795, 1065, 1390, 1453, 1542, 1989, 2364, 2840
ErhI	CCWWGG	9 cut(s)	138, 795, 1065, 1390, 1453, 1542, 1989, 2364, 2840
FalI	AAGNNNNNCTT	2 cut(s)	1668, 1700
FaqI	GGGAC	2 cut(s)	314, 1865
FbaI	TGATCA	1 cut(s)	2454
FblI	GTMKAC	1 cut(s)	594
FokI	GGATG	2 cut(s)	26, 2464
FspBI	CTAG	8 cut(s)	341, 1061, 1142, 1365, 1475, 2031, 2793, 2910
GlaI	GCGC	1 cut(s)	2765
GsaI	CCCAGC	1 cut(s)	2538
GsuI	CTGGAG	2 cut(s)	1794, 2280
HaeIII	GGCC	5 cut(s)	692, 1212, 1408, 1942, 2845
HapII	CCGG	3 cut(s)	11, 784, 1410
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	2766
Hin6I	GCGC	1 cut(s)	2764
HinP1I	GCGC	1 cut(s)	2764
HincII	GTYRAC	3 cut(s)	232, 595, 1747
HindII	GTYRAC	3 cut(s)	232, 595, 1747
HindIII	AAGCTT	3 cut(s)	716, 1096, 2240
HpaII	CCGG	3 cut(s)	11, 784, 1410
HphI	GGTGA	6 cut(s)	833, 1126, 1414, 1652, 2053, 2805
Hpy166II	GTNNAC	7 cut(s)	124, 232, 595, 760, 1117, 1643, 1747
Hpy8I	GTNNAC	7 cut(s)	124, 232, 595, 760, 1117, 1643, 1747
Hpy99I	CGWCG	2 cut(s)	463, 599
HpyAV	CCTTC	7 cut(s)	480, 780, 818, 1072, 2180, 2757, 2916
HpyCH4III	ACNGT	9 cut(s)	1035, 1251, 1519, 2038, 2113, 2134, 2280, 2491, 2558
HpyCH4IV	ACGT	1 cut(s)	2664
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 335, 545, 1046, 1055, 2300, 2574
HpyF3I	CTNAG	7 cut(s)	128, 221, 435, 776, 2026, 2243, 2564
HpySE526I	ACGT	1 cut(s)	2664
HspAI	GCGC	1 cut(s)	2764
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	2454
LguI	GCTCTTC	1 cut(s)	2628
LmnI	GCTCC	3 cut(s)	785, 2127, 2157
LweI	GCATC	3 cut(s)	304, 1036, 1687
MaeI	CTAG	8 cut(s)	341, 1061, 1142, 1365, 1475, 2031, 2793, 2910
MaeII	ACGT	1 cut(s)	2664
MaeIII	GTNAC	8 cut(s)	70, 886, 1385, 1513, 1546, 1861, 1947, 2605
MflI	RGATCY	3 cut(s)	869, 2266, 2680
MhlI	GDGCHC	3 cut(s)	585, 658, 1060
MlsI	TGGCCA	1 cut(s)	692
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	5 cut(s)	296, 515, 2537, 2719, 2953
MmeI	TCCRAC	7 cut(s)	270, 1019, 1282, 1687, 2149, 2577, 2581
Mox20I	TGGCCA	1 cut(s)	692
MroI	TCCGGA	1 cut(s)	10
MroXI	GAANNNNTTC	2 cut(s)	1932, 2333
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	9 cut(s)	24, 633, 917, 1005, 1236, 1340, 1497, 1572, 2108
MslI	CAYNNNNRTG	2 cut(s)	734, 1541
Msp20I	TGGCCA	1 cut(s)	692
MspA1I	CMGCKG	3 cut(s)	1356, 1649, 2397
MspI	CCGG	3 cut(s)	11, 784, 1410
MspR9I	CCNGG	3 cut(s)	280, 784, 1410
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	7 cut(s)	263, 335, 545, 1046, 1055, 2300, 2574
NciI	CCSGG	2 cut(s)	784, 1410
NcoI	CCATGG	5 cut(s)	1065, 1453, 1542, 1989, 2364
NlaIV	GGNNCC	7 cut(s)	441, 871, 962, 1524, 1791, 1853, 2682
NmuCI	GTSAC	5 cut(s)	886, 1385, 1513, 1546, 1947
NspI	RCATGY	3 cut(s)	766, 901, 2636
PagI	TCATGA	2 cut(s)	729, 2325
PceI	AGGCCT	1 cut(s)	1212
PciI	ACATGT	2 cut(s)	762, 2632
PciSI	GCTCTTC	1 cut(s)	2628
PdmI	GAANNNNTTC	2 cut(s)	1932, 2333
PfeI	GAWTC	9 cut(s)	43, 197, 389, 991, 1444, 1769, 2656, 2807, 2932
PleI	GAGTC	5 cut(s)	296, 515, 2537, 2718, 2953
PpsI	GAGTC	5 cut(s)	296, 515, 2537, 2718, 2953
PpuMI	RGGWCCY	2 cut(s)	1523, 1852
PscI	ACATGT	2 cut(s)	762, 2632
PshBI	ATTAAT	1 cut(s)	633
PsiI	TTATAA	1 cut(s)	1085
Psp5II	RGGWCCY	2 cut(s)	1523, 1852
Psp6I	CCWGG	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	2534
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	7 cut(s)	441, 871, 962, 1524, 1791, 1853, 2682
PspPI	GGNCC	5 cut(s)	961, 1407, 1523, 1852, 1940
PspPPI	RGGWCCY	2 cut(s)	1523, 1852
PstI	CTGCAG	2 cut(s)	337, 674
PstNI	CAGNNNCTG	1 cut(s)	1772
PsuI	RGATCY	3 cut(s)	869, 2266, 2680
PvuII	CAGCTG	1 cut(s)	1649
RsaI	GTAC	7 cut(s)	123, 288, 616, 759, 1963, 2199, 2527
RsaNI	GTAC	7 cut(s)	122, 287, 615, 758, 1962, 2198, 2526
RseI	CAYNNNNRTG	2 cut(s)	734, 1541
SalI	GTCGAC	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	2628
SaqAI	TTAA	9 cut(s)	24, 633, 917, 1005, 1236, 1340, 1497, 1572, 2108
Sau96I	GGNCC	5 cut(s)	961, 1407, 1523, 1852, 1940
SchI	GAGTC	5 cut(s)	296, 515, 2537, 2719, 2953
ScrFI	CCNGG	3 cut(s)	280, 784, 1410
SduI	GDGCHC	3 cut(s)	585, 658, 1060
SfaNI	GCATC	3 cut(s)	304, 1036, 1687
SfcI	CTRYAG	3 cut(s)	333, 670, 1247
SinI	GGWCC	3 cut(s)	961, 1523, 1852
SmiI	ATTTAAAT	1 cut(s)	1341
SmiMI	CAYNNNNRTG	2 cut(s)	734, 1541
SmlI	CTYRAG	4 cut(s)	528, 1674, 2156, 2787
SmoI	CTYRAG	4 cut(s)	528, 1674, 2156, 2787
SseBI	AGGCCT	1 cut(s)	1212
SsiI	CCGC	3 cut(s)	386, 1356, 2397
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	8 cut(s)	341, 1061, 1142, 1365, 1475, 2031, 2793, 2910
StuI	AGGCCT	1 cut(s)	1212
StyD4I	CCNGG	3 cut(s)	278, 782, 1408
StyI	CCWWGG	9 cut(s)	138, 795, 1065, 1390, 1453, 1542, 1989, 2364, 2840
SwaI	ATTTAAAT	1 cut(s)	1341
TaaI	ACNGT	9 cut(s)	1035, 1251, 1519, 2038, 2113, 2134, 2280, 2491, 2558
TaiI	ACGT	1 cut(s)	2667
TaqI	TCGA	5 cut(s)	458, 594, 1584, 2730, 2962
TatI	WGTACW	4 cut(s)	121, 757, 2197, 2525
TauI	GCSGC	1 cut(s)	2400
TfiI	GAWTC	9 cut(s)	43, 197, 389, 991, 1444, 1769, 2656, 2807, 2932
Tru1I	TTAA	9 cut(s)	24, 633, 917, 1005, 1236, 1340, 1497, 1572, 2108
Tru9I	TTAA	9 cut(s)	24, 633, 917, 1005, 1236, 1340, 1497, 1572, 2108
TscAI	CASTG	9 cut(s)	585, 679, 700, 1141, 1390, 1488, 1524, 1555, 2944
TseFI	GTSAC	5 cut(s)	886, 1385, 1513, 1546, 1947
Tsp45I	GTSAC	5 cut(s)	886, 1385, 1513, 1546, 1947
TspGWI	ACGGA	2 cut(s)	1935, 2737
TspRI	CASTG	9 cut(s)	585, 679, 700, 1141, 1390, 1488, 1524, 1555, 2944
VpaK11BI	GGWCC	3 cut(s)	961, 1523, 1852
VspI	ATTAAT	1 cut(s)	633
XbaI	TCTAGA	2 cut(s)	340, 1141
XceI	RCATGY	3 cut(s)	766, 901, 2636
XmiI	GTMKAC	1 cut(s)	594
XmnI	GAANNNNTTC	2 cut(s)	1932, 2333
XspI	CTAG	8 cut(s)	341, 1061, 1142, 1365, 1475, 2031, 2793, 2910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.