RchiOBHm_Chr5g0039861

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
34540229 .. 34543190
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31842

Sequence Viewer

Length: 2607 bp
ATGCAGGCAAGTTTCGTTGTTAATCTTGGAGAGCAAGCTCATGTACCCATGATATCATTTTCTGCAACAAGCCCTTCTCTTACTTCACTATGGAGCTCCTATTTTTTCCAATTTGCACAAAATGACTTGAACCAAGTGAAAGCTATAAGTGGAATTGTTCAGAACTTTGGATGGAGACGAGTTGTGCCCATCTACGTAGACAATATCTATGGGGAAGGAGTCATACCTTTTCTAATTGATGCCTTGCAAGAGGTTGATGTTCATATCCCCTACAGAAGTCTAATTCACGAACTAGCCACTGATGATCAAATTGAAAAAGAGCTTTACAAGTTGATGACGATGCAGACTCGAGTCTTCATTGTGCATATGATGCCTAATCTTGCCTCTCGGCTATTTGCCAAGGCAAAAGAGATGGGAATGATGAGTGAGGGTTTTGTTTGGATCACAACTAATGGTATTGGAAATAATTTAAAGTCTATGGCTTCAGTCCTTGATTCGATGCAAGGCCTATTAGGTGTAGAAACTTACATTCCAAGGACATTGAAGCTTAGACAATTCATATCAAGGTGGAAAAGGCAATTCCAACTAGACAATCCAAAAATCATTGGTGTTGAATTGGATGCTTTTGGATTGCGGGCATATGATGCTGCTTTTGCAGTAGCCATGGCCTTTGAGAAAGTTGCCAATGTAGGTTTCAAATTCCAAAAGAGGAATGCTTCTTCCTTCAACTCAACAGATCTTGATACTTTTGAGGTCTCTCATTATGGCTCAAAACTTTCTCATGCATTATCCATTATTAATTTCAAAGGTATGGCTGGAGACTTCAATCTTGTTGATAGGCAACTTCAGGCATCAACTTTTGAGATTGTTAATGTGAATGGTTATGGCGCAAGAACAGTTGGATATTGGACACCAGAAAACGGAAGGGTAGTAAAGTGGTTGAACTCAACAAGAAATAGAACAATATCAACTTCCAAGTGCGATCTTGGACCTATTATATGGCCTGGAGAGTCATTATCAGTTCCTAAAGGATGGGAGATCCCGACAAATGGTACCAAGTTAAGAATAGGAGTTCCTGTAAAGGAAGGTCTTCTAGAGTTTGTTAAAGTAACCCGCTGTCCAAGCACTAATACAGTTGACGTCACTGGGTGTAGTATTGACGTGTTTAAAGCCGTATTGGAGATCCTACCATATGCACTTCCTTATGAGTTTGTTCCCTTTGCAATGGCTAATGGAAGCAGCGCTGGCACATACAATGATTTGGTGTTTCAAGTATATGCTGGGAAGTTTGATGCTGTGGTTGGAGATATAACAATTAGAGCAAATAGGTCATTGTATGTGGGCTTTACTATGCCATATACCGAATCTGGTGTGGTGATGGTTGTGCCAATACAAGACAAGAGGACCAAAAGTGCATGGGTTTTCCTGAAGCCTTTGACATGGGACCTTTGGATGACAACTTTGTGTTTTTTCATCTTTATTGGTTTTGTGATTTGGGTGCTTGAACATCAAATTAATGATGATTTTCGTGGTTCTCCCTCACATCAAGTTGGCACAAGCTTCTGGTTCTCTTTCTCAACCATGGTTTTCTCACAAAGGGAGAAAGTGGTTAGCAACTTGGCAAGATTTGTGATGATTATATGGATATTCGTTGTACTAATAGTGACACAGAGCTATACAGCTAGTCTAGCATCACTATTGACAGTCCAACAACTCCAACCAACTGTTACCGATATAGATGATCTTTTGAGGAATAGAGATAATGTGGGCTACACGACGAATTCTTTTATTTATGGTCTCTTGAGACAAAAAGGTTTTCATGATTCCAGGCTTAAGGATTATGGAACTATGGAAGAAATAGATGAAGCTCTTTCAAAGGGTAGTGCAAATGGCGGTATTGCTGCTATTGTTCATGAAACCCCCTATATGAAGCTTTTTGTTGCAAAATATTGTTCCAAGTATACCATGATTGGACCTATATTTAAAACTGATGGCTTTGGCTTCGTATTTCCGAAAGGTTCTCCTCTTATACCCGATGTTTCACAAGCAATCCTTAATTTGACAGAAGGAGAGAAGATAATGAACATTGAAGACAAATGGATCAATAAAGAAAACAATTGTAAAGATCCAAGTACCGAGAAATTTTACAGCAGTAGTCTTGGCCTTGAGAGCTTTTGGGGCCTCTTTCTCATTGCTGGGGTTGCTTCATTATTCGCTCTCCTCATATTTGCAACTTCCTTCCTTCACAAGAATAAGCAAGTTTTGATGTCCTCTGATTCAAGAGCTTCCAAGTGGAGAAGGATTAGGACCATGTTCAAGATTTTCAATGAAAAAGAACTTAGCTCTCATACTTTTAAAAACAGTAGGCATGACGCTAGGATCGCTGGTGCTCCAGATCATGAGCTGAATGCCTCACCAAATAACAACTGGCCAGAAAGTCCATTCAGCTATACCAACCAGACGGATGCAGCTTCTGTATTCTACGGAGAGCAAGAAACACCATCTCACGGTCAAGCATCTCCAGAAATCGTTCCAACTTTTGAGCTTGCTGCTTTCACTAATCAAGAAATGCATGCAACTCCGGAAACAGCTCAAGAAAGAGTTTGA

Protein Analysis

868

Amino Acids

97.55

Weight (kDa)

6.62

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 2 - 294 6.1e-62 Receptor family ligand binding region
Peripla_BP_6 PF13458 7 - 227 6.5e-10 Periplasmic binding protein
Lig_chan-Glu_bd PF10613 377 - 462 3.8e-06 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 380 - 702 2.1e-09 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 480 - 735 5e-41 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1143
Acc65I GGTACC 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 1052
AccI GTMKAC 2 cut(s) 198, 1961
AccIII TCCGGA 1 cut(s) 2581
AciI CCGC 3 cut(s) 634, 1114, 1893
AclWI GGATC 6 cut(s) 449, 1033, 1177, 2108, 2120, 2387
AcoI YGGCCR 1 cut(s) 2429
AcsI RAATTY 3 cut(s) 698, 1780, 2141
AcuI CTGAAG 3 cut(s) 468, 830, 1448
AcyI GRCGYC 1 cut(s) 1140
AdeI CACNNNGTG 1 cut(s) 1149
AfaI GTAC 4 cut(s) 45, 1054, 1656, 2134
AfeI AGCGCT 1 cut(s) 1243
AfiI CCNNNNNNNGG 3 cut(s) 920, 1049, 2507
AflII CTTAAG 1 cut(s) 1832
AflIII ACRYGT 1 cut(s) 1161
AjiI CACGTC 1 cut(s) 1162
AjnI CCWGG 2 cut(s) 1003, 1826
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
Alw21I GWGCWC 2 cut(s) 98, 2392
Alw26I GTCTC 5 cut(s) 169, 760, 813, 1798, 1802
AlwI GGATC 6 cut(s) 449, 1033, 1177, 2108, 2120, 2387
AlwNI CAGNNNCTG 1 cut(s) 2474
Ama87I CYCGRG 1 cut(s) 348
Aor13HI TCCGGA 1 cut(s) 2581
Aor51HI AGCGCT 1 cut(s) 1243
AoxI GGCC 6 cut(s) 505, 666, 1001, 2161, 2179, 2429
ApeKI GCWGC 5 cut(s) 647, 1239, 1901, 2468, 2549
ApoI RAATTY 3 cut(s) 698, 1780, 2141
AseI ATTAAT 2 cut(s) 798, 1515
Asp700I GAANNNNTTC 2 cut(s) 1089, 2529
Asp718I GGTACC 1 cut(s) 1052
AspLEI GCGC 2 cut(s) 890, 1244
AspS9I GGNCC 6 cut(s) 989, 1404, 1444, 1973, 2179, 2307
AsuHPI GGTGA 2 cut(s) 1387, 2406
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 5 cut(s) 989, 1404, 1444, 1973, 2307
BaeGI GKGCMC 1 cut(s) 189
BalI TGGCCA 1 cut(s) 2431
BanI GGYRCC 1 cut(s) 1052
BanII GRGCYC 1 cut(s) 98
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BbsI GAAGAC 3 cut(s) 346, 1082, 2097
Bbv12I GWGCWC 2 cut(s) 98, 2392
BbvI GCAGC 5 cut(s) 634, 1251, 1888, 2480, 2536
BccI CCATC 7 cut(s) 165, 197, 406, 1026, 1372, 1985, 2509
BceAI ACGGC 1 cut(s) 1157
BciT130I CCWGG 2 cut(s) 1005, 1828
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 5 cut(s) 169, 760, 813, 1798, 1802
BfaI CTAG 6 cut(s) 293, 587, 1094, 1683, 1688, 2376
BfmI CTRYAG 1 cut(s) 271
BfoI RGCGCY 1 cut(s) 1245
BfrI CTTAAG 1 cut(s) 1832
BglII AGATCT 1 cut(s) 736
BisI GCNGC 5 cut(s) 648, 1240, 1902, 2469, 2550
BlsI GCNGC 5 cut(s) 649, 1241, 1903, 2470, 2551
Bme1390I CCNGG 2 cut(s) 1005, 1828
Bme18I GGWCC 5 cut(s) 989, 1404, 1444, 1973, 2307
BmeT110I CYCGRG 1 cut(s) 348
BmgBI CACGTC 1 cut(s) 1162
BmgT120I GGNCC 6 cut(s) 989, 1404, 1444, 1973, 2179, 2307
BmiI GGNNCC 3 cut(s) 1054, 1445, 2180
BmrFI CCNGG 2 cut(s) 1005, 1828
BmrI ACTGGG 1 cut(s) 1155
BmuI ACTGGG 1 cut(s) 1155
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 3 cut(s) 346, 1082, 2097
BpmI CTGGAG 4 cut(s) 837, 1026, 2376, 2505
BpuEI CTTGAG 3 cut(s) 1822, 2186, 2577
BsaAI YACGTR 1 cut(s) 196
BsaHI GRCGYC 1 cut(s) 1140
BsaI GGTCTC 2 cut(s) 760, 1802
BsaJI CCNNGG 4 cut(s) 399, 533, 663, 1581
BsaWI WCCGGW 1 cut(s) 2581
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 3 cut(s) 920, 1049, 2507
Bse1I ACTGG 2 cut(s) 1150, 2432
Bse3DI GCAATG 2 cut(s) 1230, 2190
BseAI TCCGGA 1 cut(s) 2581
BseBI CCWGG 2 cut(s) 1005, 1828
BseDI CCNNGG 4 cut(s) 399, 533, 663, 1581
BseGI GGATG 5 cut(s) 176, 625, 1037, 1458, 2470
BseLI CCNNNNNNNGG 3 cut(s) 920, 1049, 2507
BseMI GCAATG 2 cut(s) 1230, 2190
BseNI ACTGG 2 cut(s) 1150, 2432
BseRI GAGGAG 2 cut(s) 2013, 2210
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 5 cut(s) 634, 1251, 1888, 2480, 2536
BseYI CCCAGC 2 cut(s) 1280, 2195
BshFI GGCC 6 cut(s) 507, 668, 1003, 2163, 2181, 2431
BshNI GGYRCC 1 cut(s) 1052
BsiHKAI GWGCWC 2 cut(s) 98, 2392
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 1 cut(s) 2582
BslFI GGGAC 1 cut(s) 1457
BslI CCNNNNNNNGG 3 cut(s) 920, 1049, 2507
BsmAI GTCTC 5 cut(s) 169, 760, 813, 1798, 1802
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 1457
BsmI GAATGC 2 cut(s) 718, 2413
BsnI GGCC 6 cut(s) 507, 668, 1003, 2163, 2181, 2431
Bso31I GGTCTC 2 cut(s) 760, 1802
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 3 cut(s) 98, 189, 2392
Bsp13I TCCGGA 1 cut(s) 2581
Bsp19I CCATGG 2 cut(s) 663, 1581
BspACI CCGC 3 cut(s) 634, 1114, 1893
BspANI GGCC 6 cut(s) 507, 668, 1003, 2163, 2181, 2431
BspEI TCCGGA 1 cut(s) 2581
BspHI TCATGA 3 cut(s) 1819, 1912, 2398
BspLI GGNNCC 3 cut(s) 1054, 1445, 2180
BspPI GGATC 6 cut(s) 449, 1033, 1177, 2108, 2120, 2387
BspT107I GGYRCC 1 cut(s) 1052
BspTI CTTAAG 1 cut(s) 1832
BspTNI GGTCTC 2 cut(s) 760, 1802
BsrDI GCAATG 2 cut(s) 1230, 2190
BsrI ACTGG 2 cut(s) 1150, 2432
BssECI CCNNGG 4 cut(s) 399, 533, 663, 1581
BssNAI GTATAC 1 cut(s) 1962
BssNI GRCGYC 1 cut(s) 1140
BssT1I CCWWGG 4 cut(s) 399, 533, 663, 1581
Bst1107I GTATAC 1 cut(s) 1962
Bst2UI CCWGG 2 cut(s) 1005, 1828
Bst4CI ACNGT 6 cut(s) 898, 1135, 1705, 1726, 2363, 2510
BstACI GRCGYC 1 cut(s) 1140
BstAFI CTTAAG 1 cut(s) 1832
BstAPI GCANNNNNTGC 2 cut(s) 370, 644
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 6 cut(s) 6, 36, 636, 1246, 2547, 2574
BstDEI CTNAG 2 cut(s) 548, 2339
BstDSI CCRYGG 2 cut(s) 663, 1581
BstF5I GGATG 5 cut(s) 176, 625, 1037, 1458, 2470
BstH2I RGCGCY 1 cut(s) 1245
BstHHI GCGC 2 cut(s) 890, 1244
BstMAI GTCTC 5 cut(s) 169, 760, 813, 1798, 1802
BstNI CCWGG 2 cut(s) 1005, 1828
BstNSI RCATGY 1 cut(s) 2576
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 1003, 1826
BstSFI CTRYAG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 189
BstSNI TACGTA 1 cut(s) 196
BstV1I GCAGC 5 cut(s) 634, 1251, 1888, 2480, 2536
BstV2I GAAGAC 3 cut(s) 346, 1082, 2097
BstX2I RGATCY 4 cut(s) 736, 1038, 1182, 2125
BstYI RGATCY 4 cut(s) 736, 1038, 1182, 2125
BstZ17I GTATAC 1 cut(s) 1962
BsuRI GGCC 6 cut(s) 507, 668, 1003, 2163, 2181, 2431
BtgI CCRYGG 2 cut(s) 663, 1581
BtrI CACGTC 1 cut(s) 1162
BtsCI GGATG 5 cut(s) 176, 625, 1037, 1458, 2470
BtsIMutI CAGTG 2 cut(s) 297, 1143
Cac8I GCNNGC 6 cut(s) 6, 36, 636, 1246, 2547, 2574
CaiI CAGNNNCTG 1 cut(s) 2474
CciI TCATGA 3 cut(s) 1819, 1912, 2398
CfoI GCGC 2 cut(s) 890, 1244
Cfr13I GGNCC 6 cut(s) 989, 1404, 1444, 1973, 2179, 2307
CseI GACGC 1 cut(s) 2381
Csp6I GTAC 4 cut(s) 44, 1053, 1655, 2133
CviQI GTAC 4 cut(s) 44, 1053, 1655, 2133
DdeI CTNAG 2 cut(s) 548, 2339
DraI TTTAAA 4 cut(s) 471, 1168, 1984, 2356
DraIII CACNNNGTG 1 cut(s) 1149
EaeI YGGCCR 1 cut(s) 2429
Ecl136II GAGCTC 1 cut(s) 96
Eco105I TACGTA 1 cut(s) 196
Eco130I CCWWGG 4 cut(s) 399, 533, 663, 1581
Eco147I AGGCCT 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 2 cut(s) 760, 1802
Eco32I GATATC 1 cut(s) 54
Eco47I GGWCC 5 cut(s) 989, 1404, 1444, 1973, 2307
Eco47III AGCGCT 1 cut(s) 1243
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 3 cut(s) 468, 830, 1448
Eco88I CYCGRG 1 cut(s) 348
EcoICRI GAGCTC 1 cut(s) 96
EcoO109I RGGNCCY 2 cut(s) 1444, 2179
EcoRI GAATTC 1 cut(s) 1780
EcoRII CCWGG 2 cut(s) 1003, 1826
EcoRV GATATC 1 cut(s) 54
EcoT14I CCWWGG 4 cut(s) 399, 533, 663, 1581
EcoT22I ATGCAT 2 cut(s) 787, 2574
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 4 cut(s) 399, 533, 663, 1581
Esp3I CGTCTC 1 cut(s) 169
FalI AAGNNNNNCTT 2 cut(s) 2037, 2069
FaqI GGGAC 1 cut(s) 1457
FauI CCCGC 2 cut(s) 627, 1121
FauNDI CATATG 3 cut(s) 366, 640, 1192
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 2 cut(s) 198, 1961
Fnu4HI GCNGC 5 cut(s) 648, 1240, 1902, 2469, 2550
FokI GGATG 5 cut(s) 183, 632, 1044, 1465, 2477
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 5 cut(s) 648, 1240, 1902, 2469, 2550
FspBI CTAG 6 cut(s) 293, 587, 1094, 1683, 1688, 2376
GlaI GCGC 2 cut(s) 889, 1243
GluI GCNGC 5 cut(s) 648, 1240, 1902, 2469, 2550
GsaI CCCAGC 2 cut(s) 1284, 2199
GsuI CTGGAG 4 cut(s) 837, 1026, 2376, 2505
HaeII RGCGCY 1 cut(s) 1245
HaeIII GGCC 6 cut(s) 507, 668, 1003, 2163, 2181, 2431
HapII CCGG 1 cut(s) 2582
HgaI GACGC 1 cut(s) 2381
HhaI GCGC 2 cut(s) 890, 1244
Hin1I GRCGYC 1 cut(s) 1140
Hin6I GCGC 2 cut(s) 888, 1242
HinP1I GCGC 2 cut(s) 888, 1242
HincII GTYRAC 1 cut(s) 1138
HindII GTYRAC 1 cut(s) 1138
HindIII AAGCTT 3 cut(s) 545, 1558, 1931
HinfI GANTC 8 cut(s) 219, 346, 351, 494, 1010, 1364, 1823, 2276
HpaII CCGG 1 cut(s) 2582
HphI GGTGA 2 cut(s) 1387, 2406
Hpy166II GTNNAC 3 cut(s) 199, 1138, 1962
Hpy188I TCNGA 3 cut(s) 162, 2013, 2275
Hpy8I GTNNAC 3 cut(s) 199, 1138, 1962
Hpy99I CGWCG 1 cut(s) 1780
HpyAV CCTTC 9 cut(s) 84, 209, 733, 918, 1079, 2060, 2248, 2252, 2292
HpyCH4III ACNGT 6 cut(s) 898, 1135, 1705, 1726, 2363, 2510
HpyCH4IV ACGT 3 cut(s) 195, 1140, 1161
HpyF3I CTNAG 2 cut(s) 548, 2339
HpySE526I ACGT 3 cut(s) 195, 1140, 1161
Hsp92I GRCGYC 1 cut(s) 1140
HspAI GCGC 2 cut(s) 888, 1242
Kpn2I TCCGGA 1 cut(s) 2581
KpnI GGTACC 1 cut(s) 1056
Ksp22I TGATCA 1 cut(s) 304
LmnI GCTCC 3 cut(s) 93, 101, 2395
Lsp1109I GCAGC 5 cut(s) 634, 1251, 1888, 2480, 2536
MaeI CTAG 6 cut(s) 293, 587, 1094, 1683, 1688, 2376
MaeII ACGT 3 cut(s) 195, 1140, 1161
MaeIII GTNAC 4 cut(s) 1108, 1141, 1663, 1726
MboII GAAGA 6 cut(s) 346, 711, 1082, 1865, 2086, 2102
MfeI CAATTG 1 cut(s) 2116
MflI RGATCY 4 cut(s) 736, 1038, 1182, 2125
MhlI GDGCHC 3 cut(s) 98, 189, 2392
MlsI TGGCCA 1 cut(s) 2431
MluNI TGGCCA 1 cut(s) 2431
MlyI GAGTC 4 cut(s) 228, 340, 360, 1019
MmeI TCCRAC 6 cut(s) 607, 880, 1282, 1732, 1741, 2558
Mox20I TGGCCA 1 cut(s) 2431
Mph1103I ATGCAT 2 cut(s) 787, 2574
MroI TCCGGA 1 cut(s) 2581
MroXI GAANNNNTTC 2 cut(s) 1089, 2529
MscI TGGCCA 1 cut(s) 2431
Msp20I TGGCCA 1 cut(s) 2431
MspA1I CMGCKG 1 cut(s) 1116
MspCI CTTAAG 1 cut(s) 1832
MspI CCGG 1 cut(s) 2582
MspR9I CCNGG 2 cut(s) 1005, 1828
MunI CAATTG 1 cut(s) 2116
Mva1269I GAATGC 2 cut(s) 718, 2413
MvaI CCWGG 2 cut(s) 1005, 1828
NcoI CCATGG 2 cut(s) 663, 1581
NdeI CATATG 3 cut(s) 366, 640, 1192
NlaIV GGNNCC 3 cut(s) 1054, 1445, 2180
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 1141, 1663
NsiI ATGCAT 2 cut(s) 787, 2574
NspI RCATGY 1 cut(s) 2576
PaeI GCATGC 1 cut(s) 2576
PaeR7I CTCGAG 1 cut(s) 348
PagI TCATGA 3 cut(s) 1819, 1912, 2398
PceI AGGCCT 1 cut(s) 507
PctI GAATGC 2 cut(s) 718, 2413
PdmI GAANNNNTTC 2 cut(s) 1089, 2529
PfeI GAWTC 4 cut(s) 494, 1364, 1823, 2276
PkrI GCNGC 5 cut(s) 649, 1241, 1903, 2470, 2551
PleI GAGTC 4 cut(s) 227, 340, 359, 1018
PpsI GAGTC 4 cut(s) 227, 340, 359, 1018
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 1444
PshAI GACNNNNGTC 1 cut(s) 350
PshBI ATTAAT 2 cut(s) 798, 1515
Psp124BI GAGCTC 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 1444
Psp6I CCWGG 2 cut(s) 1003, 1826
PspFI CCCAGC 2 cut(s) 1280, 2195
PspGI CCWGG 2 cut(s) 1003, 1826
PspN4I GGNNCC 3 cut(s) 1054, 1445, 2180
PspPI GGNCC 6 cut(s) 989, 1404, 1444, 1973, 2179, 2307
PspPPI RGGWCCY 1 cut(s) 1444
PspXI VCTCGAGB 1 cut(s) 348
PstNI CAGNNNCTG 1 cut(s) 2474
PsuI RGATCY 4 cut(s) 736, 1038, 1182, 2125
RsaI GTAC 4 cut(s) 45, 1054, 1656, 2134
RsaNI GTAC 4 cut(s) 44, 1053, 1655, 2133
SacI GAGCTC 1 cut(s) 98
SatI GCNGC 5 cut(s) 648, 1240, 1902, 2469, 2550
Sau96I GGNCC 6 cut(s) 989, 1404, 1444, 1973, 2179, 2307
SchI GAGTC 4 cut(s) 228, 340, 360, 1019
ScrFI CCNGG 2 cut(s) 1005, 1828
SduI GDGCHC 3 cut(s) 98, 189, 2392
SfcI CTRYAG 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 348
SinI GGWCC 5 cut(s) 989, 1404, 1444, 1973, 2307
SlaI CTCGAG 1 cut(s) 348
SmlI CTYRAG 5 cut(s) 348, 1801, 1832, 2165, 2592
SmoI CTYRAG 5 cut(s) 348, 1801, 1832, 2165, 2592
SnaBI TACGTA 1 cut(s) 196
SphI GCATGC 1 cut(s) 2576
SseBI AGGCCT 1 cut(s) 507
SsiI CCGC 3 cut(s) 634, 1114, 1893
SspI AATATT 1 cut(s) 1949
SspMI CTAG 6 cut(s) 293, 587, 1094, 1683, 1688, 2376
SstI GAGCTC 1 cut(s) 98
StuI AGGCCT 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 1003, 1826
StyI CCWWGG 4 cut(s) 399, 533, 663, 1581
TaaI ACNGT 6 cut(s) 898, 1135, 1705, 1726, 2363, 2510
TaiI ACGT 3 cut(s) 198, 1143, 1164
TaqI TCGA 2 cut(s) 349, 497
TatI WGTACW 1 cut(s) 1654
TfiI GAWTC 4 cut(s) 494, 1364, 1823, 2276
TscAI CASTG 2 cut(s) 304, 1150
TseFI GTSAC 2 cut(s) 1141, 1663
TseI GCWGC 5 cut(s) 647, 1239, 1901, 2468, 2549
Tsp45I GTSAC 2 cut(s) 1141, 1663
TspGWI ACGGA 3 cut(s) 936, 2477, 2499
TspRI CASTG 2 cut(s) 304, 1150
Vha464I CTTAAG 1 cut(s) 1832
VpaK11BI GGWCC 5 cut(s) 989, 1404, 1444, 1973, 2307
VspI ATTAAT 2 cut(s) 798, 1515
XapI RAATTY 3 cut(s) 698, 1780, 2141
XbaI TCTAGA 1 cut(s) 1093
XceI RCATGY 1 cut(s) 2576
XcmI CCANNNNNNNNNTGG 1 cut(s) 2424
XhoI CTCGAG 1 cut(s) 348
XmiI GTMKAC 2 cut(s) 198, 1961
XmnI GAANNNNTTC 2 cut(s) 1089, 2529
XspI CTAG 6 cut(s) 293, 587, 1094, 1683, 1688, 2376
ZraI GACGTC 1 cut(s) 1141
Zsp2I ATGCAT 2 cut(s) 787, 2574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.