Rh7BG059800

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
3994259 .. 3997322
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG059800.1

Sequence Viewer

Length: 441 bp
ATGAAAAACTACCCTCTTGACCTAATAAAGAATGTTGAAGTGCAAGCCATCATAGGCCCTTCATCATCGGTGGAGGCCAACTTCCTAATCAACCTTGGTGACAAAGCACATGTGCCCATAATCTCATTTTCGGCAACAAGTCCTTCTCTCACTTCAATCCGTAGCCCATACTTTTTTCGAGCTGCACAAAATGACTCTTTGCAAGTGAAAGCCATAAGCGACATCATTCAAACCTTCGGTTGGAGAAAAGTAGTCCCCATCTACGTCGACAACGAGTTTGGAGAAGGAGTCATCCCTTACCTCTCTGATGCTCTGCAAGAAATTGATGTCCAAATCGCTTACCGGAGTTGGGGAAATGCCACTGATGAGCAAATAGAAGCTGAGCTTTACAAGTTGAAGACAATGCAAACAACGGTCTTTATTGTCCACATGTTACCTTAG

Protein Analysis

146

Amino Acids

16.35

Weight (kDa)

4.89

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 6 - 144 4.4e-37 Receptor family ligand binding region
Peripla_BP_6 PF13458 7 - 115 1.5e-11 Periplasmic binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 240, 349
AflIII ACRYGT 2 cut(s) 109, 429
AgsI TTSAA 4 cut(s) 38, 156, 230, 397
AluBI AGCT 3 cut(s) 182, 380, 385
AluI AGCT 3 cut(s) 182, 380, 385
AoxI GGCC 2 cut(s) 55, 75
ApeKI GCWGC 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 56, 266
BisI GCNGC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 56
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 349
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 240, 349
BseMII CTCAG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 2 cut(s) 57, 77
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 240, 349
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 57, 77
Bsp1286I GDGCHC 1 cut(s) 117
Bsp1720I GCTNAGC 1 cut(s) 381
BspANI GGCC 2 cut(s) 57, 77
BspCNI CTCAG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 381, 438
BstF5I GGATG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 113, 433
BstSLI GKGCMC 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 57, 77
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 56
CviAII CATG 2 cut(s) 110, 430
CviJI RGCY 8 cut(s) 47, 57, 77, 165, 182, 212, 380, 385
CviKI_1 RGCY 8 cut(s) 47, 57, 77, 165, 182, 212, 380, 385
DdeI CTNAG 2 cut(s) 381, 438
Eco130I CCWWGG 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 113, 433
FaiI YATR 6 cut(s) 53, 111, 119, 169, 215, 431
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 109, 429
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 57, 77
HapII CCGG 1 cut(s) 343
Hin1II CATG 2 cut(s) 113, 433
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 194, 288
HpaII CCGG 1 cut(s) 343
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 268, 427
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 268, 427
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 69, 153, 244, 278
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 43, 185, 202, 316, 406
HpyF3I CTNAG 2 cut(s) 381, 438
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 113, 433
LpnPI CCDG 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 298
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 98, 432
MboII GAAGA 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 321
MlyI GAGTC 2 cut(s) 188, 297
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 3 cut(s) 24, 67, 311
MspI CCGG 1 cut(s) 343
NlaIII CATG 2 cut(s) 113, 433
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 2 cut(s) 113, 433
PciI ACATGT 2 cut(s) 109, 429
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 2 cut(s) 188, 296
PpsI GAGTC 2 cut(s) 188, 296
PscI ACATGT 2 cut(s) 109, 429
PspPI GGNCC 1 cut(s) 56
SalI GTCGAC 1 cut(s) 266
SatI GCNGC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 188, 297
SduI GDGCHC 1 cut(s) 117
SetI ASST 9 cut(s) 24, 96, 184, 236, 267, 303, 382, 387, 439
SfaNI GCATC 1 cut(s) 298
Sse9I AATT 1 cut(s) 321
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 178, 267
TasI AATT 1 cut(s) 321
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 17, 51
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 367
XceI RCATGY 2 cut(s) 113, 433
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.