Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

5835168 .. 5838395

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGATCTACAAAAAGTATCCTTCCAACCTTAAGAAGATTGTTCTTACAATCTTTTTCTTGTTTCTTTCTTCACCAGTTTCCTTGGCCAGGCCACAGAACAAAACCATTATTCCGGTGAAAGTGGGGGTTATACTTGGTGACCTTGAACATTCAGTGACCGAGGAGATATGGGTGAGTTGCATAAAATTGGCCATCTCAGACTTCTATGCTTCTCATGCTCATTACAAAACAAGGCTGGTCTTGAACATCAGGGAATCCAAAAATAATATTGTTGCTGCAGCTGCCAAAGCCCTAGATCTGATAAAGAATGAAAAAGTGAAAGCTATAATTGGGCCAGTGACATCCATGGAGACTAGCTTTGTTATTAGTCTCGGAGAGGAAGCTCGAGTGCCAATCATTTCATTTTCTGCAACAAGCCCTTCTCTTACTTCTCTCAGTAGCCCTTACTTTTTCCAGTTTGCACAGAATGACTCATCCCAAGTAAAAGCCATAAGAGCCATTGTAAAACATTTTGGGTGGAGACATGTTGTGCCCATCTACGTAGACACTTCATCCGGGGAGGCGGTCATACCGTACTTAATTGATGCCCTGGAAGAGTTTAATGCTCGTGTACCTTATCGCAGTGTTATTTCCCCGACTGCAACCGATGATCAGATCGAAAAAGAGCTTTACAAGTTGAAGACAATGCAAACTAGGGTCTTTGTTCTGCACATGACGCCTGAACTATGTTCTAGGCTAGTTCACAAGGCAAATGAGATTGGAATGATGACTGAGGGCTATGTTTGGATCACAACCAATGGGATAACGAATAGTTTAAAGACTATCGATTTTGAGTTCCTCGATTTGATTGACGGGGTATTAGGTGTAGAAACTTATATCCCAAGGACAAAACAACTTCAACAGTTCATGTCACGATTGCATCGGCAGATTCAAAAATACACTACAGTCGGTTTAAACTTGGATGTTTTCGGACTCTGGGCGTATGATGCTACTTTTGCACTAGCCATGGCTATTGAACAAGTATATGGGAATACAACTAGTGTTGCCCCCCAAGACTTAAATGTTGCTTCCAATAAACTGACTGATCTTGAAAGTGTTGCGGTTTCTCGAGATGGTCCAAAACTTCGCCAAGCCCTGTTAACTACTAGATTTCAAGGCATTGCTGGAGATTTCAGCCTTATTGATGGGCAACTTCAATCATCAACTTTTCAGATTGTGAATATAAACAGTGGTGCATCAAGGAAAATAGGATTTTGGACACCGCAACATGGACTGGTGAACAAGACATTCCTCAGTTCCAATATTGGACCTATTATATGGCCGGGAGATTCTCTCTCTGTTCCAAAAGGATGGGAGATCCCAACGAATGGGATTAAACTGAAAATAGGAGTTCCTGTGAAGGATGGTTTTATTGACCTTGTTAAGGTAACAACAGATCCAAGCACTAACACTACAGATGTCACGGGCTTCAGTATTGATGTCTTCAAGGCAGCAGTAGAAATGTTACCATATGCTCTTTCTTATGACTTTGTTCCCTTCACCAATCCTGATGGCACCAACACCGGGCTCACTTACAATGATTTGTGCGATCAAGTATATCTCGGGAATTTCGATGCCGTGGTTGGAGATGTGACAATTAGAGCAAACAGATCTTTGTATGTGGACTTTACAATGCCATACACAGAAGCTGGTGTGGTCATGGTTGTGCCTGTAAAAGATATAAAGAGACAAAGTGCATGGACTTTCTTGAAGCCTTGGAGATGGGACCTTTGGCTAACAATTGCTTGTTTCTTTCTCTTCATTGGCTTTGTGGTTTGGGTTCTTGAACATCGAATTAATAAACATTTTCGAGGTCCTCCAGCATATCAAGTTGGCACAAGTATTTGGTACTCCTTCTCCACCATGGTTTTTGCACAGCCGGCAAGAGTTTATAGCAACTTGGCTAGATTCGTGATGACTGTATGGATATTTGTTGTGTTAGTACTGACAATAAATTACACAGCCAGTCTAACATCACTTTATACAGTCGAAAAATTTCAGCCCACCGTTACCACTCTAAATGATCTATTACGAAATGGGGATAATGTTGGCTATGTAAGAAATTATGTTCGTGGTATCTTGAATCAAGTAGGGTTTAACAATTCCATGCTTAAGGCTTTTGATACTATGGAAGACATTGATGAAGCTCTTTCTAAAGGGAGTGCAAATGGTGGAGGAGAATTGATAATGAACATTGAAAACAAATGGTTTAAGAAGGAAAGCAATTGTCAAGATCTGAATACCAATGTTTCTAGCAAAAGTCTTGGCACTGACAGTTTTTGGGTCCTCTTCGTCTTTGTCGGGTTGGTTTCAACACTAGCTCTTATCATATTTGTAGCTTCCTTCATTTATAGGCATAGGCATGTGTTGGTGCACTCGGATACTGATTCAAAACCCTCGACATCGGAAAAGGTTCGAGCTATGTTCGAAATTTTCAACGAGAAAGACCTCAACTATCACACTTTTAAAACCAAGCAGCCACAAGAGACGGCTGAGGCCTCATCGAACAATAATAGCTGCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

854

Amino Acids

95.68

Weight (kDa)

7.62

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	53 - 349	5.6e-21	Periplasmic binding protein
ANF_receptor	PF01094	60 - 409	3e-85	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	480 - 570	8.4e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	484 - 750	2.1e-06	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	588 - 781	4.2e-34	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1553
AccB7I	CCANNNNNTGG	1 cut(s)	1367
AccI	GTMKAC	1 cut(s)	543
AciI	CCGC	3 cut(s)	563, 1100, 1262
AclWI	GGATC	3 cut(s)	794, 1351, 1430
AcoI	YGGCCR	3 cut(s)	84, 189, 1319
AcsI	RAATTY	3 cut(s)	1606, 2033, 2469
AcuI	CTGAAG	1 cut(s)	1453
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	4 cut(s)	575, 612, 1889, 1983
AfiI	CCNNNNNNNGG	5 cut(s)	87, 1268, 1367, 1423, 1563
AflII	CTTAAG	2 cut(s)	29, 2150
AflIII	ACRYGT	1 cut(s)	523
AhlI	ACTAGT	1 cut(s)	1037
AjnI	CCWGG	2 cut(s)	86, 588
Alw21I	GWGCWC	1 cut(s)	2415
Alw26I	GTCTC	5 cut(s)	344, 374, 514, 1720, 2519
Alw44I	GTGCAC	1 cut(s)	2411
AlwI	GGATC	3 cut(s)	794, 1351, 1430
AlwNI	CAGNNNCTG	1 cut(s)	1688
Ama87I	CYCGRG	3 cut(s)	384, 1107, 1601
AoxI	GGCC	6 cut(s)	84, 89, 189, 332, 1319, 2535
ApaLI	GTGCAC	1 cut(s)	2411
ApeKI	GCWGC	6 cut(s)	275, 278, 281, 1490, 2515, 2556
ApoI	RAATTY	3 cut(s)	1606, 2033, 2469
AseI	ATTAAT	1 cut(s)	1836
Asp700I	GAANNNNTTC	2 cut(s)	2034, 2451
AspS9I	GGNCC	6 cut(s)	332, 1115, 1307, 1765, 1853, 2323
AsuC2I	CCSGG	3 cut(s)	556, 1323, 1564
AsuHPI	GGTGA	6 cut(s)	63, 127, 149, 184, 1288, 1531
AsuII	TTCGAA	1 cut(s)	2466
AvaI	CYCGRG	3 cut(s)	384, 1107, 1601
AvaII	GGWCC	5 cut(s)	1115, 1307, 1765, 1853, 2323
BaeGI	GKGCMC	2 cut(s)	534, 2415
BalI	TGGCCA	2 cut(s)	86, 191
BanI	GGYRCC	1 cut(s)	1553
BanII	GRGCYC	1 cut(s)	1569
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	3 cut(s)	686, 1474, 2178
Bbv12I	GWGCWC	1 cut(s)	2415
BbvCI	CCTCAGC	1 cut(s)	2532
BbvI	GCAGC	6 cut(s)	262, 268, 290, 1502, 2527, 2543
BccI	CCATC	8 cut(s)	200, 542, 1106, 1178, 1344, 1397, 1544, 1755
BceAI	ACGGC	2 cut(s)	1601, 2544
BciT130I	CCWGG	2 cut(s)	88, 590
BciVI	GTATCC	2 cut(s)	27, 2413
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	3 cut(s)	556, 1323, 1564
BcoDI	GTCTC	5 cut(s)	344, 374, 514, 1720, 2519
BcuI	ACTAGT	1 cut(s)	1037
BfmI	CTRYAG	3 cut(s)	276, 942, 1452
BfrI	CTTAAG	2 cut(s)	29, 2150
BfuI	GTATCC	2 cut(s)	27, 2413
BglII	AGATCT	3 cut(s)	295, 1649, 2272
BisI	GCNGC	6 cut(s)	276, 279, 282, 1491, 2516, 2557
BlsI	GCNGC	6 cut(s)	277, 280, 283, 1492, 2517, 2558
BmcAI	AGTACT	1 cut(s)	1983
Bme1390I	CCNGG	5 cut(s)	88, 556, 590, 1323, 1564
Bme18I	GGWCC	5 cut(s)	1115, 1307, 1765, 1853, 2323
BmeT110I	CYCGRG	3 cut(s)	384, 1107, 1601
BmgT120I	GGNCC	6 cut(s)	332, 1115, 1307, 1765, 1853, 2323
BmiI	GGNNCC	3 cut(s)	1555, 1766, 2324
BmrFI	CCNGG	5 cut(s)	88, 556, 590, 1323, 1564
BmsI	GCATC	5 cut(s)	574, 928, 976, 1244, 1603
BpiI	GAAGAC	3 cut(s)	686, 1474, 2178
BplI	GAGNNNNNCTC	2 cut(s)	1317, 1349
BpmI	CTGGAG	2 cut(s)	1185, 1842
Bpu10I	CCTNAGC	1 cut(s)	2532
Bpu14I	TTCGAA	1 cut(s)	2466
BpuMI	CCSGG	3 cut(s)	556, 1323, 1564
Bsa29I	ATCGAT	1 cut(s)	825
BsaAI	YACGTR	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	716
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	1380, 1410, 1880, 1910
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 1268, 1367, 1423, 1563
Bse118I	RCCGGY	1 cut(s)	1918
Bse1I	ACTGG	5 cut(s)	74, 335, 454, 1278, 2004
Bse3DI	GCAATG	1 cut(s)	1158
BseBI	CCWGG	2 cut(s)	88, 590
BseCI	ATCGAT	1 cut(s)	825
BseGI	GGATG	6 cut(s)	341, 473, 551, 967, 1355, 1408
BseLI	CCNNNNNNNGG	5 cut(s)	87, 1268, 1367, 1423, 1563
BseMI	GCAATG	1 cut(s)	1158
BseMII	CTCAG	5 cut(s)	210, 448, 762, 1306, 2523
BseNI	ACTGG	5 cut(s)	74, 335, 454, 1278, 2004
BseRI	GAGGAG	2 cut(s)	176, 2229
BseSI	GKGCMC	2 cut(s)	534, 2415
BseXI	GCAGC	6 cut(s)	262, 268, 290, 1502, 2527, 2543
BsgI	GTGCAG	1 cut(s)	692
BshFI	GGCC	6 cut(s)	86, 91, 191, 334, 1321, 2537
BshNI	GGYRCC	1 cut(s)	1553
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	2415
BsiHKCI	CYCGRG	3 cut(s)	384, 1107, 1601
BsiSI	CCGG	5 cut(s)	113, 555, 1322, 1563, 1919
BslFI	GGGAC	1 cut(s)	1778
BslI	CCNNNNNNNGG	5 cut(s)	87, 1268, 1367, 1423, 1563
BsmAI	GTCTC	5 cut(s)	344, 374, 514, 1720, 2519
BsmBI	CGTCTC	1 cut(s)	2519
BsmFI	GGGAC	1 cut(s)	1778
BsnI	GGCC	6 cut(s)	86, 91, 191, 334, 1321, 2537
BsoBI	CYCGRG	3 cut(s)	384, 1107, 1601
Bsp119I	TTCGAA	1 cut(s)	2466
Bsp1286I	GDGCHC	3 cut(s)	534, 1569, 2415
Bsp19I	CCATGG	3 cut(s)	345, 1005, 1902
BspACI	CCGC	3 cut(s)	563, 1100, 1262
BspANI	GGCC	6 cut(s)	86, 91, 191, 334, 1321, 2537
BspCNI	CTCAG	5 cut(s)	209, 447, 763, 1305, 2524
BspDI	ATCGAT	1 cut(s)	825
BspLI	GGNNCC	3 cut(s)	1555, 1766, 2324
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	794, 1351, 1430
BspT104I	TTCGAA	1 cut(s)	2466
BspT107I	GGYRCC	1 cut(s)	1553
BspTI	CTTAAG	2 cut(s)	29, 2150
BsrDI	GCAATG	1 cut(s)	1158
BsrFI	RCCGGY	1 cut(s)	1918
BsrI	ACTGG	5 cut(s)	74, 335, 454, 1278, 2004
BssAI	RCCGGY	1 cut(s)	1918
BssNI	GRCGYC	1 cut(s)	716
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	6 cut(s)	81, 345, 881, 1005, 1754, 1902
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	88, 590
Bst4CI	ACNGT	8 cut(s)	573, 903, 946, 1229, 1960, 2026, 2047, 2315
Bst6I	CTCTTC	3 cut(s)	588, 1802, 2333
BstACI	GRCGYC	1 cut(s)	716
BstAFI	CTTAAG	2 cut(s)	29, 2150
BstBAI	YACGTR	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	2466
BstC8I	GCNNGC	1 cut(s)	1920
BstDEI	CTNAG	5 cut(s)	196, 434, 771, 1292, 2532
BstDSI	CCRYGG	4 cut(s)	345, 1005, 1617, 1902
BstEII	GGTNACC	1 cut(s)	137
BstENI	CCTNNNNNAGG	2 cut(s)	85, 1421
BstF5I	GGATG	6 cut(s)	341, 473, 551, 967, 1355, 1408
BstMAI	GTCTC	5 cut(s)	344, 374, 514, 1720, 2519
BstMWI	GCNNNNNNNGC	8 cut(s)	215, 281, 287, 494, 715, 986, 995, 1919
BstNI	CCWGG	2 cut(s)	88, 590
BstNSI	RCATGY	2 cut(s)	527, 2405
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	5 cut(s)	86, 554, 588, 1321, 1562
BstSFI	CTRYAG	3 cut(s)	276, 942, 1452
BstSLI	GKGCMC	2 cut(s)	534, 2415
BstSNI	TACGTA	1 cut(s)	541
BstV1I	GCAGC	6 cut(s)	262, 268, 290, 1502, 2527, 2543
BstV2I	GAAGAC	3 cut(s)	686, 1474, 2178
BstX2I	RGATCY	5 cut(s)	295, 1356, 1435, 1649, 2272
BstXI	CCANNNNNNTGG	1 cut(s)	1350
BstYI	RGATCY	5 cut(s)	295, 1356, 1435, 1649, 2272
Bsu15I	ATCGAT	1 cut(s)	825
BsuI	GTATCC	2 cut(s)	27, 2413
BsuRI	GGCC	6 cut(s)	86, 91, 191, 334, 1321, 2537
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	4 cut(s)	345, 1005, 1617, 1902
BtsCI	GGATG	6 cut(s)	341, 473, 551, 967, 1355, 1408
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	5 cut(s)	159, 342, 628, 1234, 2307
Cac8I	GCNNGC	1 cut(s)	1920
CaiI	CAGNNNCTG	1 cut(s)	1688
Cfr10I	RCCGGY	1 cut(s)	1918
Cfr13I	GGNCC	6 cut(s)	332, 1115, 1307, 1765, 1853, 2323
ClaI	ATCGAT	1 cut(s)	825
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	4 cut(s)	574, 611, 1888, 1982
CviQI	GTAC	4 cut(s)	574, 611, 1888, 1982
DdeI	CTNAG	5 cut(s)	196, 434, 771, 1292, 2532
DraI	TTTAAA	3 cut(s)	816, 954, 2506
EaeI	YGGCCR	3 cut(s)	84, 189, 1319
Eam1104I	CTCTTC	3 cut(s)	588, 1802, 2333
EarI	CTCTTC	3 cut(s)	588, 1802, 2333
Eco105I	TACGTA	1 cut(s)	541
Eco130I	CCWWGG	6 cut(s)	81, 345, 881, 1005, 1754, 1902
Eco147I	AGGCCT	1 cut(s)	2537
Eco24I	GRGCYC	1 cut(s)	1569
Eco47I	GGWCC	5 cut(s)	1115, 1307, 1765, 1853, 2323
Eco57I	CTGAAG	1 cut(s)	1453
Eco88I	CYCGRG	3 cut(s)	384, 1107, 1601
Eco91I	GGTNACC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	2 cut(s)	85, 1421
EcoO109I	RGGNCCY	3 cut(s)	1765, 1853, 2323
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	86, 588
EcoT14I	CCWWGG	6 cut(s)	81, 345, 881, 1005, 1754, 1902
EcoT38I	GRGCYC	1 cut(s)	1569
ErhI	CCWWGG	6 cut(s)	81, 345, 881, 1005, 1754, 1902
Esp3I	CGTCTC	1 cut(s)	2519
FaqI	GGGAC	1 cut(s)	1778
FauNDI	CATATG	1 cut(s)	1510
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	6 cut(s)	276, 279, 282, 1491, 2516, 2557
FokI	GGATG	6 cut(s)	328, 460, 538, 974, 1362, 1415
FriOI	GRGCYC	1 cut(s)	1569
Fsp4HI	GCNGC	6 cut(s)	276, 279, 282, 1491, 2516, 2557
GluI	GCNGC	6 cut(s)	276, 279, 282, 1491, 2516, 2557
GsuI	CTGGAG	2 cut(s)	1185, 1842
HaeIII	GGCC	6 cut(s)	86, 91, 191, 334, 1321, 2537
HapII	CCGG	5 cut(s)	113, 555, 1322, 1563, 1919
HgaI	GACGC	1 cut(s)	724
Hin1I	GRCGYC	1 cut(s)	716
HincII	GTYRAC	1 cut(s)	1140
HindII	GTYRAC	1 cut(s)	1140
HinfI	GANTC	8 cut(s)	254, 470, 928, 972, 1328, 1947, 2122, 2426
HpaI	GTTAAC	1 cut(s)	1140
HpaII	CCGG	5 cut(s)	113, 555, 1322, 1563, 1919
HphI	GGTGA	6 cut(s)	63, 127, 149, 184, 1288, 1531
Hpy166II	GTNNAC	7 cut(s)	544, 611, 742, 1140, 1279, 1663, 2413
Hpy188I	TCNGA	9 cut(s)	199, 300, 374, 654, 971, 1212, 2277, 2419, 2446
Hpy8I	GTNNAC	7 cut(s)	544, 611, 742, 1140, 1279, 1663, 2413
HpyAV	CCTTC	7 cut(s)	30, 429, 1393, 1546, 1903, 2248, 2392
HpyCH4III	ACNGT	8 cut(s)	573, 903, 946, 1229, 1960, 2026, 2047, 2315
HpyCH4IV	ACGT	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	8 cut(s)	215, 281, 287, 494, 715, 986, 995, 1919
HpyF3I	CTNAG	5 cut(s)	196, 434, 771, 1292, 2532
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	716
KroI	GCCGGC	1 cut(s)	1918
KroNI	GCCGGC	1 cut(s)	1920
Ksp22I	TGATCA	1 cut(s)	649
KspAI	GTTAAC	1 cut(s)	1140
Lsp1109I	GCAGC	6 cut(s)	262, 268, 290, 1502, 2527, 2543
LweI	GCATC	5 cut(s)	574, 928, 976, 1244, 1603
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	9 cut(s)	137, 154, 337, 909, 1426, 1459, 1503, 1630, 2047
MboII	GAAGA	8 cut(s)	46, 60, 605, 691, 1474, 1789, 2183, 2320
MfeI	CAATTG	2 cut(s)	1779, 2263
MflI	RGATCY	5 cut(s)	295, 1356, 1435, 1649, 2272
MhlI	GDGCHC	3 cut(s)	534, 1569, 2415
MlsI	TGGCCA	2 cut(s)	86, 191
MluNI	TGGCCA	2 cut(s)	86, 191
MlyI	GAGTC	2 cut(s)	464, 966
MmeI	TCCRAC	2 cut(s)	48, 1603
Mox20I	TGGCCA	2 cut(s)	86, 191
MroNI	GCCGGC	1 cut(s)	1918
MroXI	GAANNNNTTC	2 cut(s)	2034, 2451
MscI	TGGCCA	2 cut(s)	86, 191
MslI	CAYNNNNRTG	2 cut(s)	1703, 2400
Msp20I	TGGCCA	2 cut(s)	86, 191
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	2 cut(s)	29, 2150
MspI	CCGG	5 cut(s)	113, 555, 1322, 1563, 1919
MspR9I	CCNGG	5 cut(s)	88, 556, 590, 1323, 1564
MssI	GTTTAAAC	1 cut(s)	954
MunI	CAATTG	2 cut(s)	1779, 2263
MvaI	CCWGG	2 cut(s)	88, 590
MwoI	GCNNNNNNNGC	8 cut(s)	215, 281, 287, 494, 715, 986, 995, 1919
NaeI	GCCGGC	1 cut(s)	1920
NciI	CCSGG	3 cut(s)	556, 1323, 1564
NcoI	CCATGG	3 cut(s)	345, 1005, 1902
NdeI	CATATG	1 cut(s)	1510
NgoMIV	GCCGGC	1 cut(s)	1918
NlaIV	GGNNCC	3 cut(s)	1555, 1766, 2324
NmuCI	GTSAC	6 cut(s)	137, 154, 337, 909, 1459, 1630
NspI	RCATGY	2 cut(s)	527, 2405
NspV	TTCGAA	1 cut(s)	2466
PaeR7I	CTCGAG	2 cut(s)	384, 1107
PceI	AGGCCT	1 cut(s)	2537
PciI	ACATGT	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	1608
PdiI	GCCGGC	1 cut(s)	1920
PdmI	GAANNNNTTC	2 cut(s)	2034, 2451
PfeI	GAWTC	6 cut(s)	254, 928, 1328, 1947, 2122, 2426
PflMI	CCANNNNNTGG	1 cut(s)	1367
PkrI	GCNGC	6 cut(s)	277, 280, 283, 1492, 2517, 2558
PleI	GAGTC	2 cut(s)	464, 966
PmeI	GTTTAAAC	1 cut(s)	954
PpsI	GAGTC	2 cut(s)	464, 966
Ppu21I	YACGTR	1 cut(s)	541
PpuMI	RGGWCCY	3 cut(s)	1765, 1853, 2323
PscI	ACATGT	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	1836
Psp5II	RGGWCCY	3 cut(s)	1765, 1853, 2323
Psp6I	CCWGG	2 cut(s)	86, 588
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	86, 588
PspN4I	GGNNCC	3 cut(s)	1555, 1766, 2324
PspPI	GGNCC	6 cut(s)	332, 1115, 1307, 1765, 1853, 2323
PspPPI	RGGWCCY	3 cut(s)	1765, 1853, 2323
PspXI	VCTCGAGB	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	1688
PsuI	RGATCY	5 cut(s)	295, 1356, 1435, 1649, 2272
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	4 cut(s)	575, 612, 1889, 1983
RsaNI	GTAC	4 cut(s)	574, 611, 1888, 1982
RseI	CAYNNNNRTG	2 cut(s)	1703, 2400
SatI	GCNGC	6 cut(s)	276, 279, 282, 1491, 2516, 2557
Sau96I	GGNCC	6 cut(s)	332, 1115, 1307, 1765, 1853, 2323
ScaI	AGTACT	1 cut(s)	1983
SchI	GAGTC	2 cut(s)	464, 966
ScrFI	CCNGG	5 cut(s)	88, 556, 590, 1323, 1564
SduI	GDGCHC	3 cut(s)	534, 1569, 2415
SfaNI	GCATC	5 cut(s)	574, 928, 976, 1244, 1603
SfcI	CTRYAG	3 cut(s)	276, 942, 1452
Sfr274I	CTCGAG	2 cut(s)	384, 1107
SfuI	TTCGAA	1 cut(s)	2466
SinI	GGWCC	5 cut(s)	1115, 1307, 1765, 1853, 2323
SlaI	CTCGAG	2 cut(s)	384, 1107
SmiMI	CAYNNNNRTG	2 cut(s)	1703, 2400
SmlI	CTYRAG	4 cut(s)	29, 384, 1107, 2150
SmoI	CTYRAG	4 cut(s)	29, 384, 1107, 2150
SnaBI	TACGTA	1 cut(s)	541
SpeI	ACTAGT	1 cut(s)	1037
SseBI	AGGCCT	1 cut(s)	2537
SsiI	CCGC	3 cut(s)	563, 1100, 1262
SspI	AATATT	2 cut(s)	268, 1303
StuI	AGGCCT	1 cut(s)	2537
StyD4I	CCNGG	5 cut(s)	86, 554, 588, 1321, 1562
StyI	CCWWGG	6 cut(s)	81, 345, 881, 1005, 1754, 1902
TaaI	ACNGT	8 cut(s)	573, 903, 946, 1229, 1960, 2026, 2047, 2315
TaiI	ACGT	1 cut(s)	543
TaqII	GACCGA	1 cut(s)	173
TatI	WGTACW	1 cut(s)	1981
TfiI	GAWTC	6 cut(s)	254, 928, 1328, 1947, 2122, 2426
TscAI	CASTG	5 cut(s)	159, 342, 628, 1234, 2314
TseFI	GTSAC	6 cut(s)	137, 154, 337, 909, 1459, 1630
TseI	GCWGC	6 cut(s)	275, 278, 281, 1490, 2515, 2556
Tsp45I	GTSAC	6 cut(s)	137, 154, 337, 909, 1459, 1630
TspDTI	ATGAA	8 cut(s)	324, 390, 540, 895, 1789, 2196, 2243, 2374
TspRI	CASTG	5 cut(s)	159, 342, 628, 1234, 2314
Van91I	CCANNNNNTGG	1 cut(s)	1367
Vha464I	CTTAAG	2 cut(s)	29, 2150
VneI	GTGCAC	1 cut(s)	2411
VpaK11BI	GGWCC	5 cut(s)	1115, 1307, 1765, 1853, 2323
VspI	ATTAAT	1 cut(s)	1836
XagI	CCTNNNNNAGG	2 cut(s)	85, 1421
XapI	RAATTY	3 cut(s)	1606, 2033, 2469
XceI	RCATGY	2 cut(s)	527, 2405
XhoI	CTCGAG	2 cut(s)	384, 1107
XmiI	GTMKAC	1 cut(s)	543
XmnI	GAANNNNTTC	2 cut(s)	2034, 2451
ZrmI	AGTACT	1 cut(s)	1983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.