Rorug06G0050100

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
6796216 .. 6796849
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0050100.1

Sequence Viewer

Length: 549 bp
ATGAAGGAAGATTTGAAAGACCTAGAAACTAGAATCCGTGAGCAGGATACTCGCCTCAGTTATCTCCAATCAAGTGGCTTCCAACTCGCAAACTTCTACTTCGTGTTTCAAGGAGTTATTCTCTCGGCAATTGTTAATGGTAACTCATCCCTCAGATGCTCAGATCGCTGGTTCCTCATCAGTCTTTCTCTCTTAGCAGCTGTGCTTAATTTATTTTCATTGCTCGTGATTGGACGCAATTTCCTCAGAAGCTACATCCAACGAGAAAAAACCTGGGATGAGCGCAATAGGCTGCACGCTGAGGTACGCAAGCGTACTCCTGATCTGACGTCGCTGCGGACAGCATCAACTACGCTAGCTGGTTCAGAAGATCCCGCACCTACAAGAATGGAAAGTAATCAAGCTCAGGGCACCATTGACGATGGCGATACTTGGGGAAAAAATCTACGAAAGAGGATTAATGTAAGAATCCAATATCAACCAATGACAAATGCATTAGGCTTTGTGAAGGTGCTAGCTAGGTGTATAAGCATCTGCACTGGTTACTAG

Protein Analysis

182

Amino Acids

20.78

Weight (kDa)

9.62

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 410
AciI CCGC 2 cut(s) 337, 375
AclWI GGATC 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 2 cut(s) 306, 316
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 16, 110
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 5 cut(s) 200, 252, 359, 404, 518
AluI AGCT 5 cut(s) 200, 252, 359, 404, 518
AlwI GGATC 1 cut(s) 365
ApeKI GCWGC 3 cut(s) 197, 292, 334
AseI ATTAAT 1 cut(s) 459
AspLEI GCGC 1 cut(s) 285
AsuNHI GCTAGC 2 cut(s) 355, 514
BaeGI GKGCMC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 410
BauI CACGAG 1 cut(s) 224
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 209, 279, 321
BccI CCATC 1 cut(s) 416
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 1 cut(s) 274
BciVI GTATCC 1 cut(s) 40
BfaI CTAG 6 cut(s) 23, 30, 356, 515, 519, 547
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 3 cut(s) 198, 293, 335
BlsI GCNGC 3 cut(s) 199, 294, 336
Bme1390I CCNGG 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 173, 412
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 3 cut(s) 146, 353, 540
BmtI GCTAGC 2 cut(s) 359, 518
BplI GAGNNNNNCTC 2 cut(s) 105, 137
Bpu10I CCTNAGC 2 cut(s) 300, 405
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 146, 255, 283
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 6 cut(s) 70, 166, 174, 259, 291, 419
BseNI ACTGG 1 cut(s) 544
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 3 cut(s) 209, 279, 321
BsgI GTGCAG 2 cut(s) 278, 520
BshNI GGYRCC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 3 cut(s) 163, 322, 370
BspACI CCGC 2 cut(s) 337, 375
BspCNI CTCAG 6 cut(s) 69, 165, 173, 258, 292, 418
BspLI GGNNCC 2 cut(s) 173, 412
BspOI GCTAGC 2 cut(s) 359, 518
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 3 cut(s) 163, 322, 370
BssNI GRCGYC 1 cut(s) 329
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 297, 311, 357, 516
BstDEI CTNAG 7 cut(s) 56, 152, 160, 193, 245, 300, 405
BstF5I GGATG 3 cut(s) 146, 255, 283
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 3 cut(s) 166, 325, 373
BstMBI GATC 3 cut(s) 163, 322, 370
BstMWI GCNNNNNNNGC 2 cut(s) 165, 289
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 3 cut(s) 209, 279, 321
BstX2I RGATCY 1 cut(s) 370
BstXI CCANNNNNNTGG 1 cut(s) 74
BstYI RGATCY 1 cut(s) 370
BsuI GTATCC 1 cut(s) 40
BtsCI GGATG 3 cut(s) 146, 255, 283
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 4 cut(s) 297, 311, 357, 516
CfoI GCGC 1 cut(s) 285
CseI GACGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 305, 315
CviJI RGCY 8 cut(s) 78, 200, 252, 292, 359, 404, 501, 518
CviKI_1 RGCY 8 cut(s) 78, 200, 252, 292, 359, 404, 501, 518
CviQI GTAC 2 cut(s) 305, 315
DdeI CTNAG 7 cut(s) 56, 152, 160, 193, 245, 300, 405
DpnI GATC 3 cut(s) 165, 324, 372
DpnII GATC 3 cut(s) 163, 322, 370
EcoRII CCWGG 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 496
FaiI YATR 1 cut(s) 527
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 198, 293, 335
FokI GGATG 3 cut(s) 133, 242, 290
Fsp4HI GCNGC 3 cut(s) 198, 293, 335
FspBI CTAG 6 cut(s) 23, 30, 356, 515, 519, 547
GlaI GCGC 1 cut(s) 284
GluI GCNGC 3 cut(s) 198, 293, 335
HgaI GACGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 329
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 2 cut(s) 33, 468
Hpy188I TCNGA 5 cut(s) 155, 163, 248, 327, 367
Hpy188III TCNNGA 2 cut(s) 226, 320
Hpy99I CGWCG 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 502
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 3 cut(s) 295, 494, 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 289
HpyF3I CTNAG 7 cut(s) 56, 152, 160, 193, 245, 300, 405
HpySE526I ACGT 1 cut(s) 329
Hsp92I GRCGYC 1 cut(s) 329
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 163, 322, 370
LpnPI CCDG 8 cut(s) 29, 154, 259, 286, 333, 345, 392, 525
Lsp1109I GCAGC 3 cut(s) 209, 279, 321
LweI GCATC 3 cut(s) 146, 353, 540
MaeI CTAG 6 cut(s) 23, 30, 356, 515, 519, 547
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 140, 542
MalI GATC 3 cut(s) 165, 324, 372
MboI GATC 3 cut(s) 163, 322, 370
MboII GAAGA 2 cut(s) 20, 380
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 3 cut(s) 129, 208, 238
MmeI TCCRAC 2 cut(s) 106, 283
MnlI CCTC 6 cut(s) 65, 161, 185, 254, 295, 447
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 3 cut(s) 135, 207, 459
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 274
MunI CAATTG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 165, 289
NdeII GATC 3 cut(s) 163, 322, 370
NheI GCTAGC 2 cut(s) 355, 514
NlaIV GGNNCC 2 cut(s) 173, 412
NmeAIII GCCGAG 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 496
PfeI GAWTC 2 cut(s) 33, 468
PkrI GCNGC 3 cut(s) 199, 294, 336
PshBI ATTAAT 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 173, 412
PsuI RGATCY 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 306, 316
RsaNI GTAC 2 cut(s) 305, 315
SaqAI TTAA 3 cut(s) 135, 207, 459
SatI GCNGC 3 cut(s) 198, 293, 335
Sau3AI GATC 3 cut(s) 163, 322, 370
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 3 cut(s) 146, 353, 540
Sse9I AATT 3 cut(s) 129, 208, 238
SsiI CCGC 2 cut(s) 337, 375
SspMI CTAG 6 cut(s) 23, 30, 356, 515, 519, 547
StyD4I CCNGG 1 cut(s) 272
TaiI ACGT 1 cut(s) 332
TasI AATT 3 cut(s) 129, 208, 238
TfiI GAWTC 2 cut(s) 33, 468
Tru1I TTAA 3 cut(s) 135, 207, 459
Tru9I TTAA 3 cut(s) 135, 207, 459
TscAI CASTG 1 cut(s) 544
TseI GCWGC 3 cut(s) 197, 292, 334
TspDTI ATGAA 2 cut(s) 17, 207
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 544
VspI ATTAAT 1 cut(s) 459
XspI CTAG 6 cut(s) 23, 30, 356, 515, 519, 547
ZraI GACGTC 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.