Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

11607434 .. 11610826

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGATGAACAAAAAGTACCCTTGCAACCTCAATAATAATCTTTCTCTCATATCTATCTTTGTCTTGCTTCTTTCTTCATGGATTTCCTTGGCCATTCCACAAAACAGAACTATGATTCCAGTGGGTCTTGTTCTCGATGACTATAGTTCAGTGCGGGGCAAGATTTTGTTGAGTGTGTTCCAAATGGCCCTCTCTGACATCTCTGCTTATCACCCTAGCTACAAGACCAGACTGGTCTTGAAAACTGGGGAGTCGAAAAAAAATGTTGTTGGGGCAGCTGCCGCTGCTCTAAATCTGATAAAGAATGAAGAAGTGCAAGCCATCATCGGGCCAGTGACATCAATGGAGACAAGCTTTGTCATCAATCTCGGAGACCAAACTCATGTGCCCATCATATCATTTTCAGCAACAAGTCCTTCGCTTACTTCCCTCCGGAGCTCCTACTTTTTCCAGTTTGCTCAAAATGACACATCCCAAGTGAGAGCTATAAGTGCAGTCATTAACAATTACGGGTGGAGACAAGTTGTGCCTATATACATAGACACTTCGTACGGGGAGGCAGTCATACCATTCTTAACCGATGCCTTACAAGAGATAGGTGTAAATGTCCCCTACCGGAGTGTGATTTCCCCCTCTGCAACTGATGATCAAATTGCCAACGAGCTTTACAAGCTAATGATCATGCAAACTAGAGTCTTCATTGTCCATATGACAACCGATCTAAGCTCTAAGCTATTTGCCAAGGCAGAAGAGATTGGAATGATGGTTGAAGGCTATGTTTGGCTAACCACAAGTGGAATAACTAATCGTTTAACATCACTGAACTCTTCAGTAATCCATTCCATGAATGGAGCCATAGGTGTGCAAACTCATGTCCAAAAAACAGCAGAGCTAGAAGAATTCAAACTCCGGTGGAAAAGGCAATTCCAAAAGGACCATCCACTCATCGTTGGCGCTGAATTGGATGTTTTCGGATTTTGGGCTTATGATGCTACTTTTGCACTAGCAATGGCAATTGAACAAGTGATTGGCAATACAAGTAGTTTTGATTTCCAAAAGCCAAATGCCTCCAACAAGTCCACAGATATTCTTGACAGTTTTCCAATCTCTCCATATGGTCCAAAACTTTGCAAAGCCCTATCAACTACTAGATTCCCAGGCATTGCTGGAGATTTAATGCTCATTGATGGGCAACTTCAATCATCTAATTTTCTGATAATTAATGTCAACGGCCGTGGAGCAAGAACAATTGGATTTTGGACACCACACCATGGACTTGTTAGCAAAATGAATTATTCCACAAGCCATCTTGGACCTGTCATATGGCCAGGAGAGTCTCTCTCTGTTCCCAAAGGGTGGGAGATCCCAACAAAGGGCAAGAAGTTGAGAATAGGAGTTCCTGTAAAGGATGGGTTTTTCGAGCTTGTTAAGGTAACAAAAGATCCAACCAAGAACACAACGGATGTTACCGGATTCAGTATTGATGTGTTTAAGGCCGTAGTTGAGAAGTTGCCATATGCTATTTCGTATGACTTCATTCCTTTTGCAAAGCCTGATGGCACCCCAGCTGGCAATTACAATGATATGTGCTATCAAGTGTACCTTGGGAAGTTTGATGCTGTGGTCGGAGATACAACAATTAGAGCAAATAGGTCTCTGTATGTGGACTTTACGATGCCATATGCAGACACCGGAGTAGTAATGGTTGTACCCGTCGTAGACACAAATAAAAGAAGTGCATGGGCATTCTTGAAGCCATGGGAATGGGACATTTGGCTTGCAATCATTATTTCCTTATTGTCAGTTGGTTTTGTCGTTTGGGCCGTTGAACATCACACTAATGAAGACTTTCGGGGCAAAACAGCAGAGCAAGAAGTTGGCAAAGTTGTCTGGTTCTCCTTCTCAACCATGGTTTTTGCCCACCATGAGAGAGTGGATAGCAACTTGGCCAGACTTGTTATGGGTATATGGATATTTGTTGTACTGGTGCTGACAATAAATTACCAAGCAAGTCTAACCTCAATATATACGGTTGAAAAACTTGAGCCAACTATTACCAGTATCCAGGATATATTAAGGAAGGGGGAAAACATTGGCTATATAGCATCTTCTTTTACTTACGAGACGTTGAAGCAAGTAGGTTTTGAAGATTCCAAGCTTAGGGCTTTCGGAAGTATGGAATCAATTGACGATGCTCTTTCAAACAGTGGCATCGCTGGTTTTGTTGATGAAACACCCTATATGAAACTTTTTATTGCAAGATATTGCAACAAATATACCATGATTGGACCCATCTTCAAAACCGATGGATTTGGCTTTGTATTTCCAAAACGCTCTCCTCTTCTACCGGATGTTTCCCAGGCAGTCCTGAACATTACCGGAGGAGAAACGATACTGAACATTGAAAACACATGGTTCAAGAAAGACGGCAACTGTGAAGACGGTAGTAACCCAAAAGTTTCCAGCAATAAACTTGACTTGAGAGACTTTCGGGTCCTATTTGTCACTACCTTGGTGGCTTCAGGACTTGCTCTCATCATATATATAATCCGGTTCAGTTACAAGTATAGGGACGTTTGGAATTCTGAAACATCTATATGTAGAAGGATTGGGGCCATGTTAAAAAAATTTCTTGATATAGACCCCAATTCTCATACTTTTAGAAGCCAGCAGCCGGATGTAGTTACAACCTTTCCAAACAACAATAGCCCAGAAAGTCCGGTACTCATCCAGAATTCAAACCACGCAAATACGAATTATGTATCTTCTGATTCTGATTCTGATTCTGGACAGCAACGAACATCTACTGAGTCTCCTGCTGAAGTTCATCGACTGATCAGCAATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

949

Amino Acids

105.67

Weight (kDa)

6.41

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	53 - 344	3e-17	Periplasmic binding protein
ANF_receptor	PF01094	58 - 411	5.9e-80	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	477 - 570	6.7e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	485 - 807	5.1e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	588 - 840	3.8e-33	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2492
AccB1I	GGYRCC	1 cut(s)	1559
AccB7I	CCANNNNNTGG	2 cut(s)	1271, 1356
AccI	GTMKAC	1 cut(s)	1719
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	2 cut(s)	154, 282
AclWI	GGATC	2 cut(s)	1357, 1436
AcoI	YGGCCR	4 cut(s)	90, 1231, 1325, 1947
AcsI	RAATTY	4 cut(s)	899, 2581, 2627, 2734
AcuI	CTGAAG	3 cut(s)	813, 2505, 2841
AfaI	GTAC	6 cut(s)	17, 551, 1601, 1710, 1983, 2724
AfiI	CCNNNNNNNGG	7 cut(s)	327, 1271, 1356, 1372, 1373, 2160, 2674
AjnI	CCWGG	4 cut(s)	1156, 1327, 2064, 2358
AjuI	GAANNNNNNNTTGG	2 cut(s)	1011, 1043
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	8 cut(s)	341, 366, 511, 1341, 1659, 2117, 2478, 2817
AlwI	GGATC	2 cut(s)	1357, 1436
Aor13HI	TCCGGA	1 cut(s)	432
AoxI	GGCC	9 cut(s)	90, 186, 329, 1231, 1325, 1494, 1821, 1947, 2613
ApeKI	GCWGC	4 cut(s)	275, 278, 284, 2671
ApoI	RAATTY	4 cut(s)	899, 2581, 2627, 2734
AseI	ATTAAT	1 cut(s)	1221
Asp700I	GAANNNNTTC	1 cut(s)	1848
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	9 cut(s)	187, 329, 934, 1118, 1313, 1821, 2288, 2494, 2613
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	5 cut(s)	934, 1118, 1313, 2288, 2494
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	3 cut(s)	92, 1327, 1949
BanI	GGYRCC	1 cut(s)	1559
BanII	GRGCYC	1 cut(s)	440
BbsI	GAAGAC	3 cut(s)	688, 1851, 2445
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	4 cut(s)	265, 271, 287, 2683
BceAI	ACGGC	5 cut(s)	1218, 1246, 1481, 1808, 2443
BciT130I	CCWGG	4 cut(s)	1158, 1329, 2066, 2360
BciVI	GTATCC	1 cut(s)	2072
BclI	TGATCA	3 cut(s)	646, 678, 2835
BcoDI	GTCTC	8 cut(s)	341, 366, 511, 1341, 1659, 2117, 2478, 2817
BfaI	CTAG	5 cut(s)	216, 690, 893, 1004, 1149
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	957
BfuI	GTATCC	1 cut(s)	2072
BisI	GCNGC	5 cut(s)	276, 279, 282, 285, 2672
BlsI	GCNGC	5 cut(s)	277, 280, 283, 286, 2673
Bme1390I	CCNGG	4 cut(s)	1158, 1329, 2066, 2360
Bme18I	GGWCC	5 cut(s)	934, 1118, 1313, 2288, 2494
BmgT120I	GGNCC	9 cut(s)	187, 329, 934, 1118, 1313, 1821, 2288, 2494, 2613
BmiI	GGNNCC	5 cut(s)	853, 1561, 2290, 2495, 2614
BmrFI	CCNGG	4 cut(s)	1158, 1329, 2066, 2360
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	7 cut(s)	571, 979, 1606, 1665, 2114, 2182, 2220
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	3 cut(s)	688, 1851, 2445
BplI	GAGNNNNNCTC	4 cut(s)	1323, 1355, 1325, 1357
BpmI	CTGGAG	1 cut(s)	1188
Bpu10I	CCTNAGC	1 cut(s)	2159
BpuEI	CTTGAG	2 cut(s)	2063, 2500
BsaI	GGTCTC	2 cut(s)	366, 1659
BsaWI	WCCGGW	9 cut(s)	432, 615, 909, 1469, 1691, 2347, 2378, 2550, 2719
BsaXI	ACNNNNNCTCC	4 cut(s)	1386, 1416, 2797, 2827
Bsc4I	CCNNNNNNNGG	7 cut(s)	327, 1271, 1356, 1372, 1373, 2160, 2674
Bse1I	ACTGG	7 cut(s)	119, 237, 250, 332, 451, 1989, 2058
Bse3DI	GCAATG	2 cut(s)	1014, 1161
BseAI	TCCGGA	1 cut(s)	432
BseBI	CCWGG	4 cut(s)	1158, 1329, 2066, 2360
BseGI	GGATG	8 cut(s)	470, 937, 970, 1414, 1468, 2356, 2683, 2727
BseLI	CCNNNNNNNGG	7 cut(s)	327, 1271, 1356, 1372, 1373, 2160, 2674
BseMI	GCAATG	2 cut(s)	1014, 1161
BseMII	CTCAG	1 cut(s)	2799
BseNI	ACTGG	7 cut(s)	119, 237, 250, 332, 451, 1989, 2058
BseRI	GAGGAG	2 cut(s)	2328, 2397
BseSI	GKGCMC	1 cut(s)	390
BseX3I	CGGCCG	1 cut(s)	1231
BseXI	GCAGC	4 cut(s)	265, 271, 287, 2683
BseYI	CCCAGC	1 cut(s)	1564
BsgI	GTGCAG	1 cut(s)	513
Bsh1285I	CGRYCG	1 cut(s)	1234
BshFI	GGCC	9 cut(s)	92, 188, 331, 1233, 1327, 1496, 1823, 1949, 2615
BshNI	GGYRCC	1 cut(s)	1559
BsiEI	CGRYCG	1 cut(s)	1234
BsiHKAI	GWGCWC	1 cut(s)	440
BsiWI	CGTACG	1 cut(s)	549
BslFI	GGGAC	3 cut(s)	593, 1781, 2585
BslI	CCNNNNNNNGG	7 cut(s)	327, 1271, 1356, 1372, 1373, 2160, 2674
BsmAI	GTCTC	8 cut(s)	341, 366, 511, 1341, 1659, 2117, 2478, 2817
BsmBI	CGTCTC	1 cut(s)	2117
BsmFI	GGGAC	3 cut(s)	593, 1781, 2585
BsmI	GAATGC	1 cut(s)	1745
BsnI	GGCC	9 cut(s)	92, 188, 331, 1233, 1327, 1496, 1823, 1949, 2615
Bso31I	GGTCTC	2 cut(s)	366, 1659
Bsp1286I	GDGCHC	2 cut(s)	390, 440
Bsp13I	TCCGGA	1 cut(s)	432
Bsp143I	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
Bsp19I	CCATGG	3 cut(s)	1270, 1757, 1908
BspACI	CCGC	2 cut(s)	154, 282
BspANI	GGCC	9 cut(s)	92, 188, 331, 1233, 1327, 1496, 1823, 1949, 2615
BspCNI	CTCAG	1 cut(s)	2800
BspEI	TCCGGA	1 cut(s)	432
BspLI	GGNNCC	5 cut(s)	853, 1561, 2290, 2495, 2614
BspPI	GGATC	2 cut(s)	1357, 1436
BspT107I	GGYRCC	1 cut(s)	1559
BspTNI	GGTCTC	2 cut(s)	366, 1659
BsrDI	GCAATG	2 cut(s)	1014, 1161
BsrI	ACTGG	7 cut(s)	119, 237, 250, 332, 451, 1989, 2058
BssMI	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
BssT1I	CCWWGG	7 cut(s)	87, 741, 1270, 1603, 1757, 1908, 2511
Bst2UI	CCWGG	4 cut(s)	1158, 1329, 2066, 2360
Bst4CI	ACNGT	5 cut(s)	1097, 2032, 2207, 2435, 2444
Bst6I	CTCTTC	3 cut(s)	744, 832, 2346
BstC8I	GCNNGC	4 cut(s)	318, 1570, 1779, 2669
BstDEI	CTNAG	4 cut(s)	722, 729, 2159, 2808
BstDSI	CCRYGG	4 cut(s)	1234, 1270, 1757, 1908
BstF5I	GGATG	8 cut(s)	470, 937, 970, 1414, 1468, 2356, 2683, 2727
BstH2I	RGCGCY	1 cut(s)	957
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	6 cut(s)	649, 681, 721, 1365, 1444, 2838
BstMAI	GTCTC	8 cut(s)	341, 366, 511, 1341, 1659, 2117, 2478, 2817
BstMBI	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
BstMCI	CGRYCG	1 cut(s)	1234
BstMWI	GCNNNNNNNGC	6 cut(s)	281, 284, 491, 670, 989, 998
BstNI	CCWGG	4 cut(s)	1158, 1329, 2066, 2360
BstSCI	CCNGG	4 cut(s)	1156, 1327, 2064, 2358
BstSFI	CTRYAG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	265, 271, 287, 2683
BstV2I	GAAGAC	3 cut(s)	688, 1851, 2445
BstX2I	RGATCY	2 cut(s)	1362, 1441
BstXI	CCANNNNNNTGG	1 cut(s)	1764
BstYI	RGATCY	2 cut(s)	1362, 1441
BstZI	CGGCCG	1 cut(s)	1231
BsuI	GTATCC	1 cut(s)	2072
BsuRI	GGCC	9 cut(s)	92, 188, 331, 1233, 1327, 1496, 1823, 1949, 2615
BtgI	CCRYGG	4 cut(s)	1234, 1270, 1757, 1908
BtgZI	GCGATG	1 cut(s)	2197
BtsCI	GGATG	8 cut(s)	470, 937, 970, 1414, 1468, 2356, 2683, 2727
BtsIMutI	CAGTG	6 cut(s)	126, 156, 339, 818, 2212, 2845
Cac8I	GCNNGC	4 cut(s)	318, 1570, 1779, 2669
CfoI	GCGC	1 cut(s)	956
Cfr13I	GGNCC	9 cut(s)	187, 329, 934, 1118, 1313, 1821, 2288, 2494, 2613
Csp6I	GTAC	6 cut(s)	16, 550, 1600, 1709, 1982, 2723
CspCI	CAANNNNNGTGG	2 cut(s)	1216, 1251
CviQI	GTAC	6 cut(s)	16, 550, 1600, 1709, 1982, 2723
DdeI	CTNAG	4 cut(s)	722, 729, 2159, 2808
DpnI	GATC	6 cut(s)	648, 680, 720, 1364, 1443, 2837
DpnII	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
DrdI	GACNNNNNNGTC	1 cut(s)	2492
DseDI	GACNNNNNNGTC	1 cut(s)	2492
EaeI	YGGCCR	4 cut(s)	90, 1231, 1325, 1947
EagI	CGGCCG	1 cut(s)	1231
Eam1104I	CTCTTC	3 cut(s)	744, 832, 2346
EarI	CTCTTC	3 cut(s)	744, 832, 2346
Ecl136II	GAGCTC	1 cut(s)	438
EclXI	CGGCCG	1 cut(s)	1231
Eco130I	CCWWGG	7 cut(s)	87, 741, 1270, 1603, 1757, 1908, 2511
Eco24I	GRGCYC	1 cut(s)	440
Eco31I	GGTCTC	2 cut(s)	366, 1659
Eco47I	GGWCC	5 cut(s)	934, 1118, 1313, 2288, 2494
Eco52I	CGGCCG	1 cut(s)	1231
Eco53kI	GAGCTC	1 cut(s)	438
Eco57I	CTGAAG	3 cut(s)	813, 2505, 2841
EcoICRI	GAGCTC	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	2494
EcoRI	GAATTC	3 cut(s)	899, 2581, 2734
EcoRII	CCWGG	4 cut(s)	1156, 1327, 2064, 2358
EcoT14I	CCWWGG	7 cut(s)	87, 741, 1270, 1603, 1757, 1908, 2511
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	7 cut(s)	87, 741, 1270, 1603, 1757, 1908, 2511
Esp3I	CGTCTC	1 cut(s)	2117
FalI	AAGNNNNNCTT	2 cut(s)	1587, 1619
FaqI	GGGAC	3 cut(s)	593, 1781, 2585
FauI	CCCGC	1 cut(s)	147
FauNDI	CATATG	5 cut(s)	708, 1114, 1322, 1516, 1681
FbaI	TGATCA	3 cut(s)	646, 678, 2835
FblI	GTMKAC	1 cut(s)	1719
Fnu4HI	GCNGC	5 cut(s)	276, 279, 282, 285, 2672
FokI	GGATG	8 cut(s)	457, 924, 977, 1421, 1475, 2363, 2690, 2714
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	5 cut(s)	276, 279, 282, 285, 2672
FspBI	CTAG	5 cut(s)	216, 690, 893, 1004, 1149
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	5 cut(s)	276, 279, 282, 285, 2672
GsaI	CCCAGC	1 cut(s)	1568
GsuI	CTGGAG	1 cut(s)	1188
HaeII	RGCGCY	1 cut(s)	957
HaeIII	GGCC	9 cut(s)	92, 188, 331, 1233, 1327, 1496, 1823, 1949, 2615
HhaI	GCGC	1 cut(s)	956
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HincII	GTYRAC	1 cut(s)	1228
HindII	GTYRAC	1 cut(s)	1228
HindIII	AAGCTT	2 cut(s)	352, 2156
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	5 cut(s)	1080, 1228, 1600, 1666, 1720
Hpy8I	GTNNAC	5 cut(s)	1080, 1228, 1600, 1666, 1720
Hpy99I	CGWCG	1 cut(s)	1718
HpyAV	CCTTC	5 cut(s)	426, 764, 1909, 2074, 2598
HpyCH4III	ACNGT	5 cut(s)	1097, 2032, 2207, 2435, 2444
HpyCH4IV	ACGT	2 cut(s)	2126, 2574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	281, 284, 491, 670, 989, 998
HpyF3I	CTNAG	4 cut(s)	722, 729, 2159, 2808
HpySE526I	ACGT	2 cut(s)	2126, 2574
HspAI	GCGC	1 cut(s)	954
Kpn2I	TCCGGA	1 cut(s)	432
Ksp22I	TGATCA	3 cut(s)	646, 678, 2835
Kzo9I	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
LmnI	GCTCC	4 cut(s)	435, 443, 851, 1238
Lsp1109I	GCAGC	4 cut(s)	265, 271, 287, 2683
LweI	GCATC	7 cut(s)	571, 979, 1606, 1665, 2114, 2182, 2220
MaeI	CTAG	5 cut(s)	216, 690, 893, 1004, 1149
MaeII	ACGT	2 cut(s)	2126, 2574
MaeIII	GTNAC	7 cut(s)	334, 1432, 1465, 2447, 2503, 2558, 2683
MalI	GATC	6 cut(s)	648, 680, 720, 1364, 1443, 2837
MboI	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
MfeI	CAATTG	3 cut(s)	1014, 1248, 2184
MflI	RGATCY	2 cut(s)	1362, 1441
MhlI	GDGCHC	2 cut(s)	390, 440
MlsI	TGGCCA	3 cut(s)	92, 1327, 1949
MluNI	TGGCCA	3 cut(s)	92, 1327, 1949
MlyI	GAGTC	4 cut(s)	260, 702, 1343, 2819
MmeI	TCCRAC	3 cut(s)	1095, 1469, 1606
MnlI	CCTC	9 cut(s)	38, 200, 440, 550, 643, 1078, 2029, 2349, 2375
Mox20I	TGGCCA	3 cut(s)	92, 1327, 1949
MroI	TCCGGA	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	1848
MscI	TGGCCA	3 cut(s)	92, 1327, 1949
MseI	TTAA	9 cut(s)	501, 575, 812, 1175, 1221, 1428, 1491, 2075, 2621
MslI	CAYNNNNRTG	4 cut(s)	860, 1762, 1839, 2596
Msp20I	TGGCCA	3 cut(s)	92, 1327, 1949
MspA1I	CMGCKG	3 cut(s)	278, 284, 1568
MspR9I	CCNGG	4 cut(s)	1158, 1329, 2066, 2360
MunI	CAATTG	3 cut(s)	1014, 1248, 2184
Mva1269I	GAATGC	1 cut(s)	1745
MvaI	CCWGG	4 cut(s)	1158, 1329, 2066, 2360
MwoI	GCNNNNNNNGC	6 cut(s)	281, 284, 491, 670, 989, 998
NcoI	CCATGG	3 cut(s)	1270, 1757, 1908
NdeI	CATATG	5 cut(s)	708, 1114, 1322, 1516, 1681
NdeII	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
NlaIV	GGNNCC	5 cut(s)	853, 1561, 2290, 2495, 2614
NmuCI	GTSAC	2 cut(s)	334, 2503
PcsI	WCGNNNNNNNCGW	1 cut(s)	1821
PctI	GAATGC	1 cut(s)	1745
PdmI	GAANNNNTTC	1 cut(s)	1848
PfeI	GAWTC	8 cut(s)	115, 1152, 1473, 2150, 2180, 2771, 2777, 2783
Pfl23II	CGTACG	1 cut(s)	549
PflMI	CCANNNNNTGG	2 cut(s)	1271, 1356
PfoI	TCCNGGA	1 cut(s)	2064
PkrI	GCNGC	5 cut(s)	277, 280, 283, 286, 2673
PleI	GAGTC	4 cut(s)	259, 701, 1342, 2818
PpsI	GAGTC	4 cut(s)	259, 701, 1342, 2818
PpuMI	RGGWCCY	1 cut(s)	2494
PshBI	ATTAAT	1 cut(s)	1221
Psp124BI	GAGCTC	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	2494
Psp6I	CCWGG	4 cut(s)	1156, 1327, 2064, 2358
PspFI	CCCAGC	1 cut(s)	1564
PspGI	CCWGG	4 cut(s)	1156, 1327, 2064, 2358
PspLI	CGTACG	1 cut(s)	549
PspN4I	GGNNCC	5 cut(s)	853, 1561, 2290, 2495, 2614
PspPI	GGNCC	9 cut(s)	187, 329, 934, 1118, 1313, 1821, 2288, 2494, 2613
PspPPI	RGGWCCY	1 cut(s)	2494
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	1362, 1441
PvuII	CAGCTG	2 cut(s)	278, 1568
RsaI	GTAC	6 cut(s)	17, 551, 1601, 1710, 1983, 2724
RsaNI	GTAC	6 cut(s)	16, 550, 1600, 1709, 1982, 2723
RseI	CAYNNNNRTG	4 cut(s)	860, 1762, 1839, 2596
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	9 cut(s)	501, 575, 812, 1175, 1221, 1428, 1491, 2075, 2621
SatI	GCNGC	5 cut(s)	276, 279, 282, 285, 2672
Sau3AI	GATC	6 cut(s)	646, 678, 718, 1362, 1441, 2835
Sau96I	GGNCC	9 cut(s)	187, 329, 934, 1118, 1313, 1821, 2288, 2494, 2613
SchI	GAGTC	4 cut(s)	260, 702, 1343, 2819
ScrFI	CCNGG	4 cut(s)	1158, 1329, 2066, 2360
SduI	GDGCHC	2 cut(s)	390, 440
SfaNI	GCATC	7 cut(s)	571, 979, 1606, 1665, 2114, 2182, 2220
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	5 cut(s)	934, 1118, 1313, 2288, 2494
SmiMI	CAYNNNNRTG	4 cut(s)	860, 1762, 1839, 2596
SmlI	CTYRAG	2 cut(s)	2042, 2479
SmoI	CTYRAG	2 cut(s)	2042, 2479
SsiI	CCGC	2 cut(s)	154, 282
SspMI	CTAG	5 cut(s)	216, 690, 893, 1004, 1149
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	4 cut(s)	1156, 1327, 2064, 2358
StyI	CCWWGG	7 cut(s)	87, 741, 1270, 1603, 1757, 1908, 2511
TaaI	ACNGT	5 cut(s)	1097, 2032, 2207, 2435, 2444
TaiI	ACGT	2 cut(s)	2129, 2577
TaqI	TCGA	4 cut(s)	135, 254, 1419, 2830
TatI	WGTACW	1 cut(s)	1981
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	8 cut(s)	115, 1152, 1473, 2150, 2180, 2771, 2777, 2783
Tru1I	TTAA	9 cut(s)	501, 575, 812, 1175, 1221, 1428, 1491, 2075, 2621
Tru9I	TTAA	9 cut(s)	501, 575, 812, 1175, 1221, 1428, 1491, 2075, 2621
TscAI	CASTG	5 cut(s)	126, 156, 339, 825, 2212
TseFI	GTSAC	2 cut(s)	334, 2503
TseI	GCWGC	4 cut(s)	275, 278, 284, 2671
Tsp45I	GTSAC	2 cut(s)	334, 2503
TspGWI	ACGGA	1 cut(s)	1475
TspRI	CASTG	5 cut(s)	126, 156, 339, 825, 2212
Van91I	CCANNNNNTGG	2 cut(s)	1271, 1356
VpaK11BI	GGWCC	5 cut(s)	934, 1118, 1313, 2288, 2494
VspI	ATTAAT	1 cut(s)	1221
XapI	RAATTY	4 cut(s)	899, 2581, 2627, 2734
XcmI	CCANNNNNNNNNTGG	2 cut(s)	845, 1957
XmiI	GTMKAC	1 cut(s)	1719
XmnI	GAANNNNTTC	1 cut(s)	1848
XspI	CTAG	5 cut(s)	216, 690, 893, 1004, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.