Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

26959288 .. 26963213

Gene Structure 3926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2883 bp

ATGCTCAAGAAACCCCGCAATCTTGTTCTTTCTGTCTTTTTTCTGTTTCTTTCTTCATGGATTTGCTTGGCCATGGCACAAAACAAAACCACTACTACAATACCAGTGAATGTGGGTGTTGTTCTTGATATAAATCAGGACTATGGGAAGATTTGGTTGAGTTGCATCAAACTGGCGCTCTCAGACTTCTATGGATCGCATGCTCACTACAAAACAAGGCTGGTCTTGAACATTAGGGACTCCGAGAACAACGTTGTACGGGCAGCTGATGCAGCTCTAGATTTGATAATGAATACACAAGTGGAAGCCATTTTAGGACCCGTGACATCGATGGATGCGAGCTTTGTTATTAATCTGGGCGACCAAGCTCAAGTGCCAATTATTTCATTTTCTGCATCAAGCCCATCTCTTACTTCACTCCGCAGCTCCTACTTTTTCCAAATTACACAGATTGACTCATCCCAGGTGAATGCCATAAGTGCTATCGTTCACAATTTTGGATGGAGACAAGTTGTAGCCATATATGTAGACACAGAATACGGAGAAGGAGTCATACCTTTTCTAACTGATGCATTGCAAGAGGTTGATGTTGGTGTCACCTATCGAAGTGCAATTTCCCCATTAGCCACCGATGATCAAATTCTTCAAGAACTATACAAGTTAATGACCATGCAAACTAGAGTCTTTATTGTGCATATGAATCCGAATCTCGGTTCTAGGCTCTTTGCCAAGGCAAAAGAGATTGGAATGATGAGTCAAGGATATGTCTGGATCATGACTAATGGGTTAGCCAATCGGTTAACATCGATGAATTCTACAGTCATAAATTCCATGCAAGGTGCACTAGGTGTGCAAACATACTTTGCTCAGACAATGGAGCTTGAAGAATTCAACTTCCGGTGGAAGCAACAATTCCTGAAAGACCATCCAACTCTCATTGATGCTGAATTGGATATCTTAGCACTATGGGCATATGATGCAGCTTTCGCACTAGCCATGGCAGTCGAAGAAGTGGGGATCACAAGTACTGTCGACTTATTCCGAACGAAAAAATCCTCCTTCAATTTGACAGATCTTGAGAACATTGAGATTTCCAAGTATGGTACGGACCTCTGCCGAGCCCTTTCGATGACTAGATTTGAAGGCATAGCTGGAAATTTCTACATTGTTGATGGTCAACTTCAGTCATCAACCTTTCGCATAGTGAATATAAACGAGGATGGAGCAAGAGATATTGGATTTTGGACACCACAAAATGGACTCGTGAACAAATTGAATTCGGCAAACACAAGCATACTTTCAACTAATTCGAAGTCCAACCTTAAAGCTAGTGTTATATGGCCTGGAGATTCTCTCTCTTTTCCCAAGGGATGGGAGATCCCAACAAATGGCAGAAAGTTGAGAATAGGAGTTCCTGTTAATGTCGGTGTTCCTGAGTTTGTTAAGGTCACAAAAGATCCAAGCACACATACAACTGAAGTCACAGGGTTTTCTATTGACGTCTTTAAGGCTGCAATAGAGGTATTGCCATATTCTCTTCCGTATGAGTTCATTCCCTTTGAAAATCCTACTGGCTCCATTGCCGCAACTTACAACGATTTGTGCTATCAAAACTATGATGCCGTGGTGGGAGATGTAACAATCAGAGCAAACAGATCATTATACGTGGACTTTACAATGCCATACACAGAATCAGGCATAGTAATGGTTGTGCCAATCTTCGACACCCGGACCAACAATGCATGGGTATTCTTGAAGCCTTTGACATGGGATCTTTGGCTAACAACATCATGTTTCTTTGTTTTAATCGGTTTCGTGGTTTGGGTTCTTGAACATCGAATCAATGAAGATTTTCGTGGCCCTCCCTCACATCAAATTGGCACTAGCGTCTGGTTCTCCTTCTCAACCATGGTGTTTTCACAAAGAGAGAGAGTGGTCAGCAACTTGGGAAGATTTGTGATGATTATATGGGTATTTGTTTTGTTAATACTGACACAAAGTTACACGGCTAGTCTAGCTTCACTATTAACAGTCCAACAACTTCAACCAACTGTTACCGATATAAAAGATCTTTTAAGGAAGGGAGAAAACGTGGGATATAGGAGCACTGCTTATACTTATGATCTATTGAAACAAGTAGGTTTTGACGATTCCAAGCTCAGAGGGTTTACAACTGTTGAAGAAATTCAGGAAGCTCTTTCAAAAGGGAGCCCAAATGGTGGTATTTCTGCTTTTGTTGACGAAACCCCATACACGAAGCTTCTTGTAGCCAAATATTGTTTGAAATTTACCATGGTTGGACCTATCTTCAAAACTGTTGGGTTTGGCTTTGTGTTCCCAAAACGTTCCCCTCTTGTACCTGACGTATCACAAGCAGTGCTAAACGTGACCGAAGGAGAGAAGATATTGAACATTGAAAACAAATGGTTCAATAAACAAGAAAGCAATTGTCAAGACTCTAGTAACCAACCAGTTTCCAGCAACAGTCTTGGGCTTGCCAGTTTTTGGGGTTTATTCTTGATTGCGGGGCTGGCTTCCATACTCGCACTCATCATCTTTATAGTTTGCTTTCTTTACGAGTATAGAAATATGATTCCCTCTGACTCGGGTGCCTCTAGATGGAGAAGGTTGCAGATCATGTTCGAAATCTTCAATCGAAAGGACCTTGACTCTCATACTTTTAAAACAAGTCGACTACGAGATTCAGTTCAAGCCCCAGTAAGTAACACCTTCGAAGTAGTCGACTACAATTCAAAGCAGACACAGATACATTCCGTATCTTTTGAAGATCAAGAAATACCATCAACTGATCAAGACTCGATGGTGGCAGCCACTGAGGTTGCTATTACAATTCAAGAAATCCAAGCAACTACTCTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

960

Amino Acids

107.39

Weight (kDa)

5.26

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	37 - 386	7e-22	Periplasmic binding protein
ANF_receptor	PF01094	53 - 406	2.5e-81	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	483 - 571	8.8e-06	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	491 - 811	5.9e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	589 - 845	3.6e-41	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1503
AccB1I	GGYRCC	1 cut(s)	2609
AccB7I	CCANNNNNTGG	5 cut(s)	1256, 1371, 1388, 2219, 2505
AccI	GTMKAC	4 cut(s)	528, 1032, 2692, 2742
AciI	CCGC	4 cut(s)	16, 421, 1584, 2525
AclI	AACGTT	2 cut(s)	252, 2344
AclWI	GGATC	6 cut(s)	202, 779, 1025, 1372, 1451, 1779
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	8 cut(s)	639, 811, 826, 887, 1156, 1276, 2184, 2285
AcuI	CTGAAG	2 cut(s)	1166, 1497
AcyI	GRCGYC	1 cut(s)	1500
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	4 cut(s)	258, 1027, 1105, 2358
AfiI	CCNNNNNNNGG	7 cut(s)	710, 1256, 1371, 1388, 2219, 2505, 2619
AjnI	CCWGG	2 cut(s)	462, 1342
Alw21I	GWGCWC	2 cut(s)	844, 2108
Alw26I	GTCTC	1 cut(s)	499
Alw44I	GTGCAC	1 cut(s)	840
AlwI	GGATC	6 cut(s)	202, 779, 1025, 1372, 1451, 1779
AlwNI	CAGNNNCTG	1 cut(s)	2834
Ama87I	CYCGRG	1 cut(s)	2605
AoxI	GGCC	3 cut(s)	69, 1340, 1858
ApaLI	GTGCAC	1 cut(s)	840
ApeKI	GCWGC	6 cut(s)	263, 272, 423, 980, 1511, 2828
ApoI	RAATTY	8 cut(s)	639, 811, 826, 887, 1156, 1276, 2184, 2285
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	2 cut(s)	1851, 2184
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	6 cut(s)	317, 1108, 1731, 1859, 2300, 2662
AsuC2I	CCSGG	1 cut(s)	1729
AsuHPI	GGTGA	2 cut(s)	478, 589
AsuII	TTCGAA	3 cut(s)	1310, 2643, 2733
AvaI	CYCGRG	1 cut(s)	2605
AvaII	GGWCC	5 cut(s)	317, 1108, 1731, 2300, 2662
BaeGI	GKGCMC	1 cut(s)	844
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	2609
BanII	GRGCYC	2 cut(s)	1123, 2213
BarI	GAAGNNNNNNTAC	2 cut(s)	537, 569
BauI	CACGAG	1 cut(s)	1262
Bbv12I	GWGCWC	2 cut(s)	844, 2108
BbvI	GCAGC	6 cut(s)	275, 284, 435, 992, 1498, 2840
BceAI	ACGGC	2 cut(s)	1607, 2022
BciT130I	CCWGG	2 cut(s)	464, 1344
BclI	TGATCA	2 cut(s)	634, 2809
BcnI	CCSGG	1 cut(s)	1729
BcoDI	GTCTC	1 cut(s)	499
BfmI	CTRYAG	1 cut(s)	816
BfoI	RGCGCY	1 cut(s)	179
BglII	AGATCT	2 cut(s)	1072, 2068
BisI	GCNGC	7 cut(s)	264, 273, 424, 981, 1512, 1584, 2829
BlsI	GCNGC	7 cut(s)	265, 274, 425, 982, 1513, 1585, 2830
BmcAI	AGTACT	1 cut(s)	1027
Bme1390I	CCNGG	3 cut(s)	464, 1344, 1729
Bme18I	GGWCC	5 cut(s)	317, 1108, 1731, 2300, 2662
BmeT110I	CYCGRG	1 cut(s)	2605
BmgT120I	GGNCC	6 cut(s)	317, 1108, 1731, 1859, 2300, 2662
BmiI	GGNNCC	4 cut(s)	319, 1576, 2210, 2611
BmrFI	CCNGG	3 cut(s)	464, 1344, 1729
BmrI	ACTGGG	1 cut(s)	2711
BmsI	GCATC	8 cut(s)	174, 259, 325, 404, 559, 931, 967, 1609
BmuI	ACTGGG	1 cut(s)	2711
BplI	GAGNNNNNCTC	2 cut(s)	1338, 1370
BpmI	CTGGAG	1 cut(s)	1365
Bpu14I	TTCGAA	3 cut(s)	1310, 2643, 2733
BpuEI	CTTGAG	2 cut(s)	354, 1097
BpuMI	CCSGG	1 cut(s)	1729
Bsa29I	ATCGAT	2 cut(s)	329, 806
BsaAI	YACGTR	1 cut(s)	1666
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	1500
BsaJI	CCNNGG	8 cut(s)	72, 462, 729, 996, 1365, 1623, 1908, 2292
BsaWI	WCCGGW	1 cut(s)	897
BsaXI	ACNNNNNCTCC	6 cut(s)	534, 564, 1401, 1431, 2076, 2106
Bsc4I	CCNNNNNNNGG	7 cut(s)	710, 1256, 1371, 1388, 2219, 2505, 2619
Bse1I	ACTGG	6 cut(s)	104, 177, 1576, 2471, 2499, 2717
Bse3DI	GCAATG	2 cut(s)	572, 1578
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	464, 1344
BseCI	ATCGAT	2 cut(s)	329, 806
BseDI	CCNNGG	8 cut(s)	72, 462, 729, 996, 1365, 1623, 1908, 2292
BseGI	GGATG	6 cut(s)	340, 458, 506, 925, 1225, 1376
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	7 cut(s)	710, 1256, 1371, 1388, 2219, 2505, 2619
BseMI	GCAATG	2 cut(s)	572, 1578
BseMII	CTCAG	5 cut(s)	195, 881, 1425, 2173, 2826
BseNI	ACTGG	6 cut(s)	104, 177, 1576, 2471, 2499, 2717
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	6 cut(s)	275, 284, 435, 992, 1498, 2840
BshFI	GGCC	3 cut(s)	71, 1342, 1860
BshNI	GGYRCC	1 cut(s)	2609
BshVI	ATCGAT	2 cut(s)	329, 806
BsiHKAI	GWGCWC	2 cut(s)	844, 2108
BsiHKCI	CYCGRG	1 cut(s)	2605
BsiSI	CCGG	2 cut(s)	898, 1729
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	7 cut(s)	710, 1256, 1371, 1388, 2219, 2505, 2619
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	71, 1342, 1860
BsoBI	CYCGRG	1 cut(s)	2605
Bsp119I	TTCGAA	3 cut(s)	1310, 2643, 2733
Bsp1286I	GDGCHC	4 cut(s)	844, 1123, 2108, 2213
Bsp19I	CCATGG	4 cut(s)	72, 996, 1908, 2292
BspACI	CCGC	4 cut(s)	16, 421, 1584, 2525
BspANI	GGCC	3 cut(s)	71, 1342, 1860
BspCNI	CTCAG	5 cut(s)	194, 880, 1426, 2172, 2827
BspDI	ATCGAT	2 cut(s)	329, 806
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	4 cut(s)	319, 1576, 2210, 2611
BspPI	GGATC	6 cut(s)	202, 779, 1025, 1372, 1451, 1779
BspT104I	TTCGAA	3 cut(s)	1310, 2643, 2733
BspT107I	GGYRCC	1 cut(s)	2609
BsrDI	GCAATG	2 cut(s)	572, 1578
BsrI	ACTGG	6 cut(s)	104, 177, 1576, 2471, 2499, 2717
BssECI	CCNNGG	8 cut(s)	72, 462, 729, 996, 1365, 1623, 1908, 2292
BssNI	GRCGYC	1 cut(s)	1500
BssSI	CACGAG	1 cut(s)	1262
BssT1I	CCWWGG	6 cut(s)	72, 729, 996, 1365, 1908, 2292
Bst2BI	CACGAG	1 cut(s)	1262
Bst2UI	CCWGG	2 cut(s)	464, 1344
Bst4CI	ACNGT	7 cut(s)	820, 1030, 2032, 2053, 2176, 2317, 2486
Bst6I	CTCTTC	1 cut(s)	1542
BstACI	GRCGYC	1 cut(s)	1500
BstAPI	GCANNNNNTGC	2 cut(s)	269, 977
BstBAI	YACGTR	1 cut(s)	1666
BstBI	TTCGAA	3 cut(s)	1310, 2643, 2733
BstC8I	GCNNGC	4 cut(s)	201, 340, 2496, 2532
BstDEI	CTNAG	6 cut(s)	181, 867, 958, 1434, 2159, 2835
BstDSI	CCRYGG	5 cut(s)	72, 996, 1623, 1908, 2292
BstF5I	GGATG	6 cut(s)	340, 458, 506, 925, 1225, 1376
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	8 cut(s)	269, 272, 479, 968, 977, 986, 2015, 2531
BstNI	CCWGG	2 cut(s)	464, 1344
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	462, 1342, 1727
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	6 cut(s)	275, 284, 435, 992, 1498, 2840
BstX2I	RGATCY	5 cut(s)	1072, 1377, 1456, 1771, 2068
BstYI	RGATCY	5 cut(s)	1072, 1377, 1456, 1771, 2068
Bsu15I	ATCGAT	2 cut(s)	329, 806
BsuRI	GGCC	3 cut(s)	71, 1342, 1860
BsuTUI	ATCGAT	2 cut(s)	329, 806
BtgI	CCRYGG	5 cut(s)	72, 996, 1623, 1908, 2292
BtsCI	GGATG	6 cut(s)	340, 458, 506, 925, 1225, 1376
BtsI	GCAGTG	2 cut(s)	2106, 2382
BtsIMutI	CAGTG	4 cut(s)	111, 2106, 2382, 2832
Cac8I	GCNNGC	4 cut(s)	201, 340, 2496, 2532
CaiI	CAGNNNCTG	1 cut(s)	2834
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	6 cut(s)	317, 1108, 1731, 1859, 2300, 2662
ClaI	ATCGAT	2 cut(s)	329, 806
CseI	GACGC	1 cut(s)	1876
Csp6I	GTAC	4 cut(s)	257, 1026, 1104, 2357
CspCI	CAANNNNNGTGG	2 cut(s)	2821, 2856
CviQI	GTAC	4 cut(s)	257, 1026, 1104, 2357
DdeI	CTNAG	6 cut(s)	181, 867, 958, 1434, 2159, 2835
DraI	TTTAAA	1 cut(s)	2683
DraIII	CACNNNGTG	1 cut(s)	848
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	1542
EarI	CTCTTC	1 cut(s)	1542
Eco130I	CCWWGG	6 cut(s)	72, 729, 996, 1365, 1908, 2292
Eco24I	GRGCYC	2 cut(s)	1123, 2213
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	5 cut(s)	317, 1108, 1731, 2300, 2662
Eco57I	CTGAAG	2 cut(s)	1166, 1497
Eco88I	CYCGRG	1 cut(s)	2605
EcoO109I	RGGNCCY	2 cut(s)	317, 2662
EcoRI	GAATTC	3 cut(s)	811, 887, 1276
EcoRII	CCWGG	2 cut(s)	462, 1342
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	6 cut(s)	72, 729, 996, 1365, 1908, 2292
EcoT22I	ATGCAT	2 cut(s)	574, 1744
EcoT38I	GRGCYC	2 cut(s)	1123, 2213
ErhI	CCWWGG	6 cut(s)	72, 729, 996, 1365, 1908, 2292
FaqI	GGGAC	1 cut(s)	251
FauI	CCCGC	2 cut(s)	23, 2518
FauNDI	CATATG	2 cut(s)	696, 973
FbaI	TGATCA	2 cut(s)	634, 2809
FblI	GTMKAC	4 cut(s)	528, 1032, 2692, 2742
Fnu4HI	GCNGC	7 cut(s)	264, 273, 424, 981, 1512, 1584, 2829
FokI	GGATG	6 cut(s)	347, 445, 513, 912, 1232, 1383
FriOI	GRGCYC	2 cut(s)	1123, 2213
Fsp4HI	GCNGC	7 cut(s)	264, 273, 424, 981, 1512, 1584, 2829
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	7 cut(s)	264, 273, 424, 981, 1512, 1584, 2829
GsuI	CTGGAG	1 cut(s)	1365
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	71, 1342, 1860
HapII	CCGG	2 cut(s)	898, 1729
HgaI	GACGC	1 cut(s)	1876
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	1500
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	6 cut(s)	801, 1033, 1178, 2239, 2693, 2743
HindII	GTYRAC	6 cut(s)	801, 1033, 1178, 2239, 2693, 2743
HindIII	AAGCTT	1 cut(s)	2258
HpaI	GTTAAC	1 cut(s)	801
HpaII	CCGG	2 cut(s)	898, 1729
HphI	GGTGA	2 cut(s)	478, 589
Hpy188I	TCNGA	8 cut(s)	184, 244, 705, 870, 1043, 1646, 2162, 2602
HpyAV	CCTTC	8 cut(s)	539, 1069, 1136, 1909, 2074, 2387, 2619, 2740
HpyCH4III	ACNGT	7 cut(s)	820, 1030, 2032, 2053, 2176, 2317, 2486
HpyCH4IV	ACGT	7 cut(s)	252, 1500, 1665, 2091, 2344, 2364, 2385
HpyF10VI	GCNNNNNNNGC	8 cut(s)	269, 272, 479, 968, 977, 986, 2015, 2531
HpyF3I	CTNAG	6 cut(s)	181, 867, 958, 1434, 2159, 2835
HpySE526I	ACGT	7 cut(s)	252, 1500, 1665, 2091, 2344, 2364, 2385
Hsp92I	GRCGYC	1 cut(s)	1500
HspAI	GCGC	1 cut(s)	176
Ksp22I	TGATCA	2 cut(s)	634, 2809
KspAI	GTTAAC	1 cut(s)	801
LmnI	GCTCC	6 cut(s)	431, 877, 1223, 1580, 2103, 2208
Lsp1109I	GCAGC	6 cut(s)	275, 284, 435, 992, 1498, 2840
LweI	GCATC	8 cut(s)	174, 259, 325, 404, 559, 931, 967, 1609
MaeII	ACGT	7 cut(s)	252, 1500, 1665, 2091, 2344, 2364, 2385
MfeI	CAATTG	1 cut(s)	2446
MflI	RGATCY	5 cut(s)	1072, 1377, 1456, 1771, 2068
MhlI	GDGCHC	4 cut(s)	844, 1123, 2108, 2213
MlsI	TGGCCA	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	71
MmeI	TCCRAC	4 cut(s)	953, 1341, 2059, 2278
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	2 cut(s)	574, 1744
MroXI	GAANNNNTTC	2 cut(s)	1851, 2184
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	1703
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	898, 1729
MspR9I	CCNGG	3 cut(s)	464, 1344, 1729
MunI	CAATTG	1 cut(s)	2446
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	2 cut(s)	464, 1344
MwoI	GCNNNNNNNGC	8 cut(s)	269, 272, 479, 968, 977, 986, 2015, 2531
NciI	CCSGG	1 cut(s)	1729
NcoI	CCATGG	4 cut(s)	72, 996, 1908, 2292
NdeI	CATATG	2 cut(s)	696, 973
NlaIV	GGNNCC	4 cut(s)	319, 1576, 2210, 2611
NmeAIII	GCCGAG	1 cut(s)	1142
NmuCI	GTSAC	5 cut(s)	322, 595, 1447, 1480, 2386
NsiI	ATGCAT	2 cut(s)	574, 1744
NspI	RCATGY	1 cut(s)	203
NspV	TTCGAA	3 cut(s)	1310, 2643, 2733
PaeI	GCATGC	1 cut(s)	203
PagI	TCATGA	1 cut(s)	774
PcsI	WCGNNNNNNNCGW	2 cut(s)	335, 2739
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	2 cut(s)	1851, 2184
PfeI	GAWTC	8 cut(s)	700, 706, 1349, 1691, 1839, 2150, 2593, 2702
PflMI	CCANNNNNTGG	5 cut(s)	1256, 1371, 1388, 2219, 2505
PkrI	GCNGC	7 cut(s)	265, 274, 425, 982, 1513, 1585, 2830
Ppu21I	YACGTR	1 cut(s)	1666
PpuMI	RGGWCCY	2 cut(s)	317, 2662
PshBI	ATTAAT	1 cut(s)	351
Psp1406I	AACGTT	2 cut(s)	252, 2344
Psp5II	RGGWCCY	2 cut(s)	317, 2662
Psp6I	CCWGG	2 cut(s)	462, 1342
PspGI	CCWGG	2 cut(s)	462, 1342
PspN4I	GGNNCC	4 cut(s)	319, 1576, 2210, 2611
PspPI	GGNCC	6 cut(s)	317, 1108, 1731, 1859, 2300, 2662
PspPPI	RGGWCCY	2 cut(s)	317, 2662
PstNI	CAGNNNCTG	1 cut(s)	2834
PsuI	RGATCY	5 cut(s)	1072, 1377, 1456, 1771, 2068
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	4 cut(s)	258, 1027, 1105, 2358
RsaNI	GTAC	4 cut(s)	257, 1026, 1104, 2357
RseI	CAYNNNNRTG	1 cut(s)	1703
SalI	GTCGAC	3 cut(s)	1031, 2691, 2741
SatI	GCNGC	7 cut(s)	264, 273, 424, 981, 1512, 1584, 2829
Sau96I	GGNCC	6 cut(s)	317, 1108, 1731, 1859, 2300, 2662
ScaI	AGTACT	1 cut(s)	1027
ScrFI	CCNGG	3 cut(s)	464, 1344, 1729
SduI	GDGCHC	4 cut(s)	844, 1123, 2108, 2213
SfaNI	GCATC	8 cut(s)	174, 259, 325, 404, 559, 931, 967, 1609
SfcI	CTRYAG	1 cut(s)	816
SfuI	TTCGAA	3 cut(s)	1310, 2643, 2733
SinI	GGWCC	5 cut(s)	317, 1108, 1731, 2300, 2662
SmiMI	CAYNNNNRTG	1 cut(s)	1703
SmlI	CTYRAG	3 cut(s)	5, 369, 1076
SmoI	CTYRAG	3 cut(s)	5, 369, 1076
SphI	GCATGC	1 cut(s)	203
SsiI	CCGC	4 cut(s)	16, 421, 1584, 2525
SspI	AATATT	1 cut(s)	2276
StyD4I	CCNGG	3 cut(s)	462, 1342, 1727
StyI	CCWWGG	6 cut(s)	72, 729, 996, 1365, 1908, 2292
TaaI	ACNGT	7 cut(s)	820, 1030, 2032, 2053, 2176, 2317, 2486
TaiI	ACGT	7 cut(s)	255, 1503, 1668, 2094, 2347, 2367, 2388
TaqII	GACCGA	1 cut(s)	2405
TatI	WGTACW	1 cut(s)	1025
TauI	GCSGC	1 cut(s)	1586
TfiI	GAWTC	8 cut(s)	700, 706, 1349, 1691, 1839, 2150, 2593, 2702
TscAI	CASTG	4 cut(s)	111, 2113, 2382, 2839
TseFI	GTSAC	5 cut(s)	322, 595, 1447, 1480, 2386
TseI	GCWGC	6 cut(s)	263, 272, 423, 980, 1511, 2828
Tsp45I	GTSAC	5 cut(s)	322, 595, 1447, 1480, 2386
TspDTI	ATGAA	7 cut(s)	45, 305, 375, 713, 824, 1540, 1860
TspGWI	ACGGA	4 cut(s)	555, 1121, 1530, 2764
TspRI	CASTG	4 cut(s)	111, 2113, 2382, 2839
Van91I	CCANNNNNTGG	5 cut(s)	1256, 1371, 1388, 2219, 2505
VneI	GTGCAC	1 cut(s)	840
VpaK11BI	GGWCC	5 cut(s)	317, 1108, 1731, 2300, 2662
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	8 cut(s)	639, 811, 826, 887, 1156, 1276, 2184, 2285
XbaI	TCTAGA	2 cut(s)	277, 2615
XceI	RCATGY	1 cut(s)	203
XmiI	GTMKAC	4 cut(s)	528, 1032, 2692, 2742
XmnI	GAANNNNTTC	2 cut(s)	1851, 2184
ZraI	GACGTC	1 cut(s)	1501
ZrmI	AGTACT	1 cut(s)	1027
Zsp2I	ATGCAT	2 cut(s)	574, 1744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.