Rh6CG512700

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
67170039 .. 67173862
3824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG512700.1

Sequence Viewer

Length: 423 bp
ATGGTACTGGGAAAAGATGTCGTCTTCGCAGTCAAAGTCTTCGTCGTCTTCTTCGTGGACGGTGACGAACTGGGCCGGCGGAAAATCAGGATCGGAGGACATGTAGAGGTCGAAGTCGTTGGAGGACCAGTTGGGGAGGGATTTGAAGGCTTAGTATATGACCAAAGAGACCCTGCTTCGCATACATGTACTCATCACAAGAGACAACTGCAACATTCTGGTGTTGATATAATAGGTGCTGTTGAAGCCTCACCAAACAGCAACTCTCCCCCAAGGCCATCAAGCGCAAGCAACATGGAATCCCACCTTGTTGTTGAAGAGCTGGGGACTCTTCCTACTGAGATTGAGCATCGCAGTGGTCGAGCAACGCCAGAGGTTGAATGTGCAATCAACTTAACTCCCCCAAGTGAAGCGAGGCATTAG

Protein Analysis

140

Amino Acids

15.11

Weight (kDa)

5.55

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 98
AfaI GTAC 2 cut(s) 6, 190
AflIII ACRYGT 2 cut(s) 100, 185
AgsI TTSAA 4 cut(s) 146, 245, 317, 380
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 162, 196
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 73, 275
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 73, 125
AsuHPI GGTGA 2 cut(s) 74, 243
AvaII GGWCC 1 cut(s) 125
BbsI GAAGAC 3 cut(s) 16, 31, 40
BccI CCATC 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 162, 196
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 73, 125
BmrI ACTGGG 2 cut(s) 17, 80
BmsI GCATC 1 cut(s) 358
BmuI ACTGGG 2 cut(s) 17, 80
BpiI GAAGAC 3 cut(s) 16, 31, 40
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 4 cut(s) 87, 114, 117, 144
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 3 cut(s) 12, 75, 128
BseDI CCNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 12, 75, 128
BseYI CCCAGC 1 cut(s) 322
BshFI GGCC 2 cut(s) 75, 277
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 162, 196
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 2 cut(s) 75, 277
Bso31I GGTCTC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 79
BspANI GGCC 2 cut(s) 75, 277
BspCNI CTCAG 1 cut(s) 331
BspPI GGATC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 3 cut(s) 12, 75, 128
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 312, 336
BstC8I GCNNGC 2 cut(s) 77, 289
BstDEI CTNAG 2 cut(s) 151, 339
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 2 cut(s) 162, 196
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 104, 189
BstV2I GAAGAC 3 cut(s) 16, 31, 40
BsuRI GGCC 2 cut(s) 75, 277
BtgZI GCGATG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 77, 289
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 73, 125
Csp6I GTAC 2 cut(s) 5, 189
CviAII CATG 3 cut(s) 101, 186, 295
CviJI RGCY 5 cut(s) 75, 150, 248, 277, 322
CviKI_1 RGCY 5 cut(s) 75, 150, 248, 277, 322
CviQI GTAC 2 cut(s) 5, 189
DdeI CTNAG 2 cut(s) 151, 339
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 312, 336
EarI CTCTTC 2 cut(s) 312, 336
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 3 cut(s) 104, 189, 298
FaiI YATR 7 cut(s) 102, 157, 159, 183, 187, 230, 296
FaqI GGGAC 1 cut(s) 340
FatI CATG 3 cut(s) 100, 185, 294
GlaI GCGC 1 cut(s) 286
GsaI CCCAGC 1 cut(s) 326
HaeIII GGCC 2 cut(s) 75, 277
HapII CCGG 1 cut(s) 76
HhaI GCGC 1 cut(s) 287
Hin1II CATG 3 cut(s) 104, 189, 298
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 2 cut(s) 299, 328
HpaII CCGG 1 cut(s) 76
HphI GGTGA 2 cut(s) 74, 243
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 211, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 151, 339
Hsp92II CATG 3 cut(s) 104, 189, 298
HspAI GCGC 1 cut(s) 285
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 312
LpnPI CCDG 8 cut(s) 56, 73, 89, 141, 186, 204, 308, 384
LweI GCATC 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 6 cut(s) 16, 31, 40, 43, 323, 329
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 7 cut(s) 89, 100, 116, 130, 259, 367, 408
MroNI GCCGGC 1 cut(s) 75
MseI TTAA 1 cut(s) 395
MslI CAYNNNNRTG 2 cut(s) 219, 354
MspI CCGG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 245
NaeI GCCGGC 1 cut(s) 77
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 3 cut(s) 104, 189, 298
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 2 cut(s) 104, 189
PciI ACATGT 2 cut(s) 100, 185
PciSI GCTCTTC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 358
PdiI GCCGGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 299
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PscI ACATGT 2 cut(s) 100, 185
PspFI CCCAGC 1 cut(s) 322
PspPI GGNCC 2 cut(s) 73, 125
RsaI GTAC 2 cut(s) 6, 190
RsaNI GTAC 2 cut(s) 5, 189
RseI CAYNNNNRTG 2 cut(s) 219, 354
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 395
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 73, 125
SchI GAGTC 1 cut(s) 322
SetI ASST 5 cut(s) 111, 238, 309, 324, 378
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 219, 354
SsiI CCGC 1 cut(s) 79
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 111, 361
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 2 cut(s) 104, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.