Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00293

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

6229 .. 11985

Gene Structure 5757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGAGCTCTATGGAGAATCAGAGGAGAAGTATCCTTCTTCTTTTCTCATGGATTTTCATGGTCGCCACCATGGCAGCTGCAAGCACAACGATAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTGATGGACCGAGTGGGAAAATGTACTCGAGTTGCATCGAAATGGCGCTCTCGGATTTCTATGCTAGCCATGCTGACTACAAGACTAGGCTCGTTTTGAACACCAGGAACTCCAATGGAGATGTGGTTGGAGCAGCTGCCGCAGCTTTACATCTGATAAAGAATGTAGAAGTGAAAGCCATCCTAGGACCGGTGTCATCCATGCAGGCAAGTTTCGTTGTTAATCTTGGAGAGCAAGCTCATGTACCCATCATATCATTTTCTGCAACAAGCCCTTCTCTTACTTCACTACGGAGCTCCTATTTTTTCCAATTTGCACAAAATGACTTGAACCAAGTGAAAGCTATAAGTGGAATTGTTCAGAACTTTGGATGGAGACGAGTTGTGCCCATCTATGTAGACAATATCTATGGGGAAGGAGTCATACCTTTTCTAATTGATGCCTTGCAAGAGGTTGATGTTCATATCCCCTACAGAAGTCTAATTCACGAACTAGCCACTGATGATCAAATTGAAAAAGAGCTTTACAAGTTGATGACGATGCAGACTCGAGTCTTCATTGTGCATATGATGCCTAATCTTTCCTCTCGGCTATTTGCCAAGGCAAAAGAGATGGGAATGATGAGTGAGGGTTTTGTTTGGATCACAACTAATAGTATTGGAAATAATTTAAAGTCTATGGCTTCAGTCCTTGATTCGATGCAAGGCCTATTAGGTGTAGAAACTTACATTCCAAGGACATTGAAGCTTAGACAATTCATATCAAGGTGGAAAAGGCAATTCCAACTAGACAATCCAAAAATCATTGATAAAGTTGCCAATGCAGGTTTCAAATTCCAAAAGAGGAATGCTTCTTCCTTCAACTCAACAGATCTTGATACTTTTGAGGTCTCTCATTATGGCTCAAAACTTTCTCATGCATTATCCATTATTAATTTCAAAGGTATGGCTGGAGACTTCAATCTTGTTAATAGGCAACTTCAGGTATCAACTTTTGAGATTGTTAATGTGAATGGTTATGGCGCAAGAACAGTTGGATATTGGACTCCAGAAAACGGAAGGGTAGTAAAGTGGTTGAACTCAACAAGAAATAGAACAATATCAACTTCCAAGTGCGATCTTGGACCTATTATATGGCCTGGAGAGTCATTATCAGTTCCTAAAGGATGGGAGATCCCGACAAATGGTACCAAGTTAAGAATAGGAGTTCCTGTGAAGGAAGGTTTTCTAGAGTTTGTTAAAGTAACCAGCTATCCAAGCACTAATACAGTTGACGTCACTGGGTGCAGTATTGACGTGTTTAAAGCCGTATTAGAGATCCTACCATATGCACTTCCTTATGAGTTTGTTCCCTTTGCAATGGCTAATGGAAGCAGCGCTGGCACATACAATGATTTGGTGTATCAAGTATATGCTGGGAAGTTTGATGCTGTGGTTGGAGATATAACAATTAGAGCAAATAGGTCATTGTATGTGGGCTTTACTATGCCATATACCGAATCTGGTGTAGTGATGGTTGTGCCAATACAAGACAAGAGGACCAAAAGTGCATGGGTTTTCTTAAAGCCTTTGACATGGGACCTTTGGATGACAACTTTGTGTTTTTTCATGTTTATTGGTTTTGTGATTTGGGTGCTTGAACATCGAATTAATGATGATTTTCGTGGTTCTCCCTCACATCAAGTTGGCACAAGCTTCTGGTTCTCTTTCTCAACCATGGTTTTCTCACAAAGGGAGAAGGTGGTTAGCAACTTGGCAAGATTTGTGATGATTATATGGATATTCGTTGTACTAATAGTGACACAGAGCTATACAGCTAGTCTAGCATCACTATTGACAGTCCAACAACTCCAACCAACTGTTACCGATATAGATGATCTTTTGAGGAATAGAGATAATGTGGGCTACACGACGAATTCTTTTATTTATGGTCTCTTGAGACAAAAAGGTTTTCATGATTCCAGGCTTAAGGATTATGGAACTATGGAACAAATAGATGAAGCTCTTTCAAAGGGTAGTGCAAATGGCGGTATTGCTGCTATTGTTCATGAAACCCCCTATATGAAGCTTTTTGTTGCAAAATATTGTTCCAAGTATACCATGATTGGACCTATATTTAAAACTGATGGCTTTGGCTTCGTATTTCCAAAAGGTTCTCCTCTTATACCCGATGTTTCACAAGCAATCCTTAATTTGACAGAAGGAGAGAAGATAATGAACATTGAAGGCGAATGGATGAAAAAAGAAAACAATTGTAAAGATCCAAGTACCGACAAATTTTACAGCAATAGTCTTGGCCTTGAGAGCTTTTGGGGCCTCTTTCTCATTATTGGGGTTGCTTCAATATTCGCTCTCCTCATATTTGCAACTTCCTTCCTTCACAAGCATAAGCAAGTTTTGATGTCCTCTGATTCAAAAGCTTCCAAGTGGAAAAGGATTAGGACCATGTTCAAGATTTTCAATGAAAAAGAACTTAGCTCTCATACTTTTAAAAGCAGTAGGCATGAAGCTAGGATCGCTGGTGCTCCGAATCATGAAGTGAATGCCTCACCAAATAACAACTGGCCAGAAAGTCCATTCAGCTATACCAACCAGACGGATGCAACTTCTGTATTCTACGGAGAGCAAGAAACACCATCTCACGGTCAAGCATCTCCAGAAATCGTTCCAACTTTTGAGCTTGCTGCTTTCACTAATCAAGAAATGCATGCAACTCCGGAAACAGCTCAAGAAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

954

Amino Acids

106.83

Weight (kDa)

8.22

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	33 - 305	9.1e-19	Periplasmic binding protein
ANF_receptor	PF01094	53 - 380	2.6e-68	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	461 - 548	1.8e-06	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	464 - 788	2.1e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	566 - 821	2.4e-41	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1401
Acc36I	ACCTGC	1 cut(s)	938
Acc65I	GGTACC	1 cut(s)	1310
AccB1I	GGYRCC	1 cut(s)	1310
AccI	GTMKAC	3 cut(s)	120, 522, 2219
AccIII	TCCGGA	1 cut(s)	2839
AciI	CCGC	2 cut(s)	264, 2151
AclWI	GGATC	5 cut(s)	773, 1291, 1435, 2378, 2645
AcoI	YGGCCR	1 cut(s)	2687
AcsI	RAATTY	3 cut(s)	956, 2038, 2399
AcuI	CTGAAG	2 cut(s)	792, 1088
AcyI	GRCGYC	1 cut(s)	1398
AdeI	CACNNNGTG	1 cut(s)	1407
AfaI	GTAC	5 cut(s)	149, 369, 1312, 1914, 2392
AfeI	AGCGCT	1 cut(s)	1501
AfiI	CCNNNNNNNGG	4 cut(s)	313, 1178, 1307, 2765
AflII	CTTAAG	1 cut(s)	2090
AflIII	ACRYGT	1 cut(s)	1419
AgeI	ACCGGT	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	1420
AjnI	CCWGG	3 cut(s)	227, 1261, 2084
AjuI	GAANNNNNNNTTGG	2 cut(s)	935, 967
Alw21I	GWGCWC	3 cut(s)	8, 422, 2650
Alw26I	GTCTC	5 cut(s)	493, 1018, 1071, 2056, 2060
AlwI	GGATC	5 cut(s)	773, 1291, 1435, 2378, 2645
Ama87I	CYCGRG	2 cut(s)	151, 672
Aor13HI	TCCGGA	1 cut(s)	2839
Aor51HI	AGCGCT	1 cut(s)	1501
AoxI	GGCC	5 cut(s)	829, 1259, 2419, 2437, 2687
ApeKI	GCWGC	8 cut(s)	74, 77, 257, 260, 266, 1497, 2159, 2807
ApoI	RAATTY	3 cut(s)	956, 2038, 2399
AseI	ATTAAT	2 cut(s)	1056, 1773
AsiGI	ACCGGT	1 cut(s)	313
Asp700I	GAANNNNTTC	2 cut(s)	1347, 2787
Asp718I	GGTACC	1 cut(s)	1310
AspA2I	CCTAGG	1 cut(s)	307
AspLEI	GCGC	3 cut(s)	172, 1148, 1502
AspS9I	GGNCC	8 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2437, 2565
AsuHPI	GGTGA	1 cut(s)	2664
AsuNHI	GCTAGC	1 cut(s)	188
AvaI	CYCGRG	2 cut(s)	151, 672
AvaII	GGWCC	7 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2565
AvrII	CCTAGG	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	2689
BanI	GGYRCC	1 cut(s)	1310
BanII	GRGCYC	2 cut(s)	8, 422
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	3 cut(s)	8, 422, 2650
BbvI	GCAGC	8 cut(s)	64, 86, 247, 269, 278, 1509, 2146, 2794
BceAI	ACGGC	1 cut(s)	1415
BciT130I	CCWGG	3 cut(s)	229, 1263, 2086
BciVI	GTATCC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	5 cut(s)	493, 1018, 1071, 2056, 2060
BfaI	CTAG	9 cut(s)	189, 210, 308, 617, 911, 1352, 1941, 1946, 2634
BfmI	CTRYAG	1 cut(s)	595
BfoI	RGCGCY	2 cut(s)	173, 1503
BfrI	CTTAAG	1 cut(s)	2090
BfuAI	ACCTGC	1 cut(s)	938
BfuI	GTATCC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	71
BglII	AGATCT	1 cut(s)	994
BisI	GCNGC	9 cut(s)	75, 78, 258, 261, 264, 267, 1498, 2160, 2808
BlnI	CCTAGG	1 cut(s)	307
BlsI	GCNGC	9 cut(s)	76, 79, 259, 262, 265, 268, 1499, 2161, 2809
Bme1390I	CCNGG	3 cut(s)	229, 1263, 2086
Bme18I	GGWCC	7 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2565
BmeT110I	CYCGRG	2 cut(s)	151, 672
BmgBI	CACGTC	1 cut(s)	1420
BmgT120I	GGNCC	8 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2437, 2565
BmiI	GGNNCC	3 cut(s)	1312, 1703, 2438
BmrFI	CCNGG	3 cut(s)	229, 1263, 2086
BmrI	ACTGGG	2 cut(s)	92, 1413
BmsI	GCATC	9 cut(s)	168, 553, 654, 684, 813, 1540, 1958, 2713, 2783
BmtI	GCTAGC	1 cut(s)	192
BmuI	ACTGGG	2 cut(s)	92, 1413
BoxI	GACNNNNGTC	2 cut(s)	316, 674
BpiI	GAAGAC	1 cut(s)	670
BpmI	CTGGAG	4 cut(s)	1095, 1155, 1284, 2763
BpuEI	CTTGAG	3 cut(s)	2080, 2444, 2835
BsaHI	GRCGYC	1 cut(s)	1398
BsaI	GGTCTC	2 cut(s)	1018, 2060
BsaJI	CCNNGG	5 cut(s)	69, 307, 723, 857, 1839
BsaWI	WCCGGW	2 cut(s)	313, 2839
BsaXI	ACNNNNNCTCC	6 cut(s)	102, 132, 234, 264, 1320, 1350
Bsc4I	CCNNNNNNNGG	4 cut(s)	313, 1178, 1307, 2765
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	3 cut(s)	98, 1408, 2690
Bse3DI	GCAATG	1 cut(s)	1488
BseAI	TCCGGA	1 cut(s)	2839
BseBI	CCWGG	3 cut(s)	229, 1263, 2086
BseDI	CCNNGG	5 cut(s)	69, 307, 723, 857, 1839
BseGI	GGATG	7 cut(s)	303, 320, 500, 1295, 1716, 2364, 2728
BseLI	CCNNNNNNNGG	4 cut(s)	313, 1178, 1307, 2765
BseMI	GCAATG	1 cut(s)	1488
BseNI	ACTGG	3 cut(s)	98, 1408, 2690
BseRI	GAGGAG	3 cut(s)	37, 2271, 2468
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	8 cut(s)	64, 86, 247, 269, 278, 1509, 2146, 2794
BseYI	CCCAGC	1 cut(s)	1538
BsgI	GTGCAG	1 cut(s)	1429
BshFI	GGCC	5 cut(s)	831, 1261, 2421, 2439, 2689
BshNI	GGYRCC	1 cut(s)	1310
BshTI	ACCGGT	1 cut(s)	313
BsiHKAI	GWGCWC	3 cut(s)	8, 422, 2650
BsiHKCI	CYCGRG	2 cut(s)	151, 672
BsiSI	CCGG	2 cut(s)	314, 2840
BslFI	GGGAC	1 cut(s)	1715
BslI	CCNNNNNNNGG	4 cut(s)	313, 1178, 1307, 2765
BsmAI	GTCTC	5 cut(s)	493, 1018, 1071, 2056, 2060
BsmBI	CGTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	1715
BsmI	GAATGC	2 cut(s)	976, 2671
BsnI	GGCC	5 cut(s)	831, 1261, 2421, 2439, 2689
Bso31I	GGTCTC	2 cut(s)	1018, 2060
BsoBI	CYCGRG	2 cut(s)	151, 672
Bsp1286I	GDGCHC	4 cut(s)	8, 422, 513, 2650
Bsp13I	TCCGGA	1 cut(s)	2839
Bsp143I	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
Bsp19I	CCATGG	2 cut(s)	69, 1839
BspACI	CCGC	2 cut(s)	264, 2151
BspANI	GGCC	5 cut(s)	831, 1261, 2421, 2439, 2689
BspEI	TCCGGA	1 cut(s)	2839
BspHI	TCATGA	3 cut(s)	2077, 2170, 2656
BspLI	GGNNCC	3 cut(s)	1312, 1703, 2438
BspMI	ACCTGC	1 cut(s)	938
BspOI	GCTAGC	1 cut(s)	192
BspPI	GGATC	5 cut(s)	773, 1291, 1435, 2378, 2645
BspT107I	GGYRCC	1 cut(s)	1310
BspTI	CTTAAG	1 cut(s)	2090
BspTNI	GGTCTC	2 cut(s)	1018, 2060
BsrDI	GCAATG	1 cut(s)	1488
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	3 cut(s)	98, 1408, 2690
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	5 cut(s)	69, 307, 723, 857, 1839
BssMI	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
BssNAI	GTATAC	1 cut(s)	2220
BssNI	GRCGYC	1 cut(s)	1398
BssT1I	CCWWGG	5 cut(s)	69, 307, 723, 857, 1839
Bst1107I	GTATAC	1 cut(s)	2220
Bst2UI	CCWGG	3 cut(s)	229, 1263, 2086
Bst4CI	ACNGT	5 cut(s)	1156, 1393, 1963, 1984, 2768
BstACI	GRCGYC	1 cut(s)	1398
BstAFI	CTTAAG	1 cut(s)	2090
BstAPI	GCANNNNNTGC	1 cut(s)	694
BstC8I	GCNNGC	7 cut(s)	82, 190, 330, 360, 1504, 2805, 2832
BstDEI	CTNAG	2 cut(s)	872, 2597
BstDSI	CCRYGG	2 cut(s)	69, 1839
BstF5I	GGATG	7 cut(s)	303, 320, 500, 1295, 1716, 2364, 2728
BstH2I	RGCGCY	2 cut(s)	173, 1503
BstHHI	GCGC	3 cut(s)	172, 1148, 1502
BstKTI	GATC	9 cut(s)	631, 768, 997, 1243, 1299, 1443, 2002, 2386, 2640
BstMAI	GTCTC	5 cut(s)	493, 1018, 1071, 2056, 2060
BstMBI	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
BstNI	CCWGG	3 cut(s)	229, 1263, 2086
BstNSI	RCATGY	1 cut(s)	2834
BstPAI	GACNNNNGTC	2 cut(s)	316, 674
BstSCI	CCNGG	3 cut(s)	227, 1261, 2084
BstSFI	CTRYAG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	8 cut(s)	64, 86, 247, 269, 278, 1509, 2146, 2794
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	4 cut(s)	994, 1296, 1440, 2383
BstYI	RGATCY	4 cut(s)	994, 1296, 1440, 2383
BstZ17I	GTATAC	1 cut(s)	2220
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	5 cut(s)	831, 1261, 2421, 2439, 2689
BtgI	CCRYGG	2 cut(s)	69, 1839
BtrI	CACGTC	1 cut(s)	1420
BtsCI	GGATG	7 cut(s)	303, 320, 500, 1295, 1716, 2364, 2728
BtsIMutI	CAGTG	3 cut(s)	105, 621, 1401
BveI	ACCTGC	1 cut(s)	938
Cac8I	GCNNGC	7 cut(s)	82, 190, 330, 360, 1504, 2805, 2832
CciI	TCATGA	3 cut(s)	2077, 2170, 2656
CfoI	GCGC	3 cut(s)	172, 1148, 1502
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	8 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2437, 2565
Csp6I	GTAC	5 cut(s)	148, 368, 1311, 1913, 2391
CspAI	ACCGGT	1 cut(s)	313
CviQI	GTAC	5 cut(s)	148, 368, 1311, 1913, 2391
DdeI	CTNAG	2 cut(s)	872, 2597
DpnI	GATC	9 cut(s)	630, 767, 996, 1242, 1298, 1442, 2001, 2385, 2639
DpnII	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
DraI	TTTAAA	4 cut(s)	795, 1426, 2242, 2614
DraIII	CACNNNGTG	1 cut(s)	1407
EaeI	YGGCCR	1 cut(s)	2687
Ecl136II	GAGCTC	2 cut(s)	6, 420
Eco130I	CCWWGG	5 cut(s)	69, 307, 723, 857, 1839
Eco147I	AGGCCT	1 cut(s)	831
Eco24I	GRGCYC	2 cut(s)	8, 422
Eco31I	GGTCTC	2 cut(s)	1018, 2060
Eco47I	GGWCC	7 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2565
Eco47III	AGCGCT	1 cut(s)	1501
Eco53kI	GAGCTC	2 cut(s)	6, 420
Eco57I	CTGAAG	2 cut(s)	792, 1088
Eco88I	CYCGRG	2 cut(s)	151, 672
EcoICRI	GAGCTC	2 cut(s)	6, 420
EcoO109I	RGGNCCY	2 cut(s)	1702, 2437
EcoRI	GAATTC	1 cut(s)	2038
EcoRII	CCWGG	3 cut(s)	227, 1261, 2084
EcoT14I	CCWWGG	5 cut(s)	69, 307, 723, 857, 1839
EcoT22I	ATGCAT	2 cut(s)	1045, 2832
EcoT38I	GRGCYC	2 cut(s)	8, 422
ErhI	CCWWGG	5 cut(s)	69, 307, 723, 857, 1839
Esp3I	CGTCTC	1 cut(s)	493
FalI	AAGNNNNNCTT	2 cut(s)	2295, 2327
FaqI	GGGAC	1 cut(s)	1715
FauNDI	CATATG	2 cut(s)	690, 1450
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	3 cut(s)	120, 522, 2219
Fnu4HI	GCNGC	9 cut(s)	75, 78, 258, 261, 264, 267, 1498, 2160, 2808
FokI	GGATG	7 cut(s)	290, 307, 507, 1302, 1723, 2371, 2735
FriOI	GRGCYC	2 cut(s)	8, 422
Fsp4HI	GCNGC	9 cut(s)	75, 78, 258, 261, 264, 267, 1498, 2160, 2808
FspBI	CTAG	9 cut(s)	189, 210, 308, 617, 911, 1352, 1941, 1946, 2634
GlaI	GCGC	3 cut(s)	171, 1147, 1501
GluI	GCNGC	9 cut(s)	75, 78, 258, 261, 264, 267, 1498, 2160, 2808
GsaI	CCCAGC	1 cut(s)	1542
GsuI	CTGGAG	4 cut(s)	1095, 1155, 1284, 2763
HaeII	RGCGCY	2 cut(s)	173, 1503
HaeIII	GGCC	5 cut(s)	831, 1261, 2421, 2439, 2689
HapII	CCGG	2 cut(s)	314, 2840
HhaI	GCGC	3 cut(s)	172, 1148, 1502
Hin1I	GRCGYC	1 cut(s)	1398
Hin6I	GCGC	3 cut(s)	170, 1146, 1500
HinP1I	GCGC	3 cut(s)	170, 1146, 1500
HincII	GTYRAC	1 cut(s)	1396
HindII	GTYRAC	1 cut(s)	1396
HindIII	AAGCTT	4 cut(s)	869, 1816, 2189, 2541
HpaII	CCGG	2 cut(s)	314, 2840
HphI	GGTGA	1 cut(s)	2664
Hpy166II	GTNNAC	5 cut(s)	103, 121, 523, 1396, 2220
Hpy188I	TCNGA	6 cut(s)	21, 178, 279, 486, 2533, 2652
Hpy8I	GTNNAC	5 cut(s)	103, 121, 523, 1396, 2220
Hpy99I	CGWCG	1 cut(s)	2038
HpyCH4III	ACNGT	5 cut(s)	1156, 1393, 1963, 1984, 2768
HpyCH4IV	ACGT	3 cut(s)	105, 1398, 1419
HpyF3I	CTNAG	2 cut(s)	872, 2597
HpySE526I	ACGT	3 cut(s)	105, 1398, 1419
Hsp92I	GRCGYC	1 cut(s)	1398
HspAI	GCGC	3 cut(s)	170, 1146, 1500
Kpn2I	TCCGGA	1 cut(s)	2839
KpnI	GGTACC	1 cut(s)	1314
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
LmnI	GCTCC	4 cut(s)	254, 417, 425, 2653
Lsp1109I	GCAGC	8 cut(s)	64, 86, 247, 269, 278, 1509, 2146, 2794
LweI	GCATC	9 cut(s)	168, 553, 654, 684, 813, 1540, 1958, 2713, 2783
MaeI	CTAG	9 cut(s)	189, 210, 308, 617, 911, 1352, 1941, 1946, 2634
MaeII	ACGT	3 cut(s)	105, 1398, 1419
MaeIII	GTNAC	4 cut(s)	1366, 1399, 1921, 1984
MalI	GATC	9 cut(s)	630, 767, 996, 1242, 1298, 1442, 2001, 2385, 2639
MboI	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
MboII	GAAGA	4 cut(s)	29, 670, 969, 2344
MfeI	CAATTG	1 cut(s)	2374
MflI	RGATCY	4 cut(s)	994, 1296, 1440, 2383
MhlI	GDGCHC	4 cut(s)	8, 422, 513, 2650
MlsI	TGGCCA	1 cut(s)	2689
MluNI	TGGCCA	1 cut(s)	2689
MlyI	GAGTC	5 cut(s)	552, 664, 684, 1162, 1277
MmeI	TCCRAC	7 cut(s)	232, 931, 1138, 1540, 1990, 1999, 2816
Mox20I	TGGCCA	1 cut(s)	2689
Mph1103I	ATGCAT	2 cut(s)	1045, 2832
MroI	TCCGGA	1 cut(s)	2839
MroXI	GAANNNNTTC	2 cut(s)	1347, 2787
MscI	TGGCCA	1 cut(s)	2689
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	2689
MspA1I	CMGCKG	2 cut(s)	77, 260
MspCI	CTTAAG	1 cut(s)	2090
MspI	CCGG	2 cut(s)	314, 2840
MspR9I	CCNGG	3 cut(s)	229, 1263, 2086
MunI	CAATTG	1 cut(s)	2374
Mva1269I	GAATGC	2 cut(s)	976, 2671
MvaI	CCWGG	3 cut(s)	229, 1263, 2086
NcoI	CCATGG	2 cut(s)	69, 1839
NdeI	CATATG	2 cut(s)	690, 1450
NdeII	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
NheI	GCTAGC	1 cut(s)	188
NlaIV	GGNNCC	3 cut(s)	1312, 1703, 2438
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	2 cut(s)	1399, 1921
NsiI	ATGCAT	2 cut(s)	1045, 2832
NspI	RCATGY	1 cut(s)	2834
PaeI	GCATGC	1 cut(s)	2834
PaeR7I	CTCGAG	2 cut(s)	151, 672
PagI	TCATGA	3 cut(s)	2077, 2170, 2656
PceI	AGGCCT	1 cut(s)	831
PctI	GAATGC	2 cut(s)	976, 2671
PdmI	GAANNNNTTC	2 cut(s)	1347, 2787
PfeI	GAWTC	6 cut(s)	16, 818, 1622, 2081, 2534, 2653
PinAI	ACCGGT	1 cut(s)	313
PkrI	GCNGC	9 cut(s)	76, 79, 259, 262, 265, 268, 1499, 2161, 2809
PleI	GAGTC	5 cut(s)	551, 664, 683, 1162, 1276
PpsI	GAGTC	5 cut(s)	551, 664, 683, 1162, 1276
PpuMI	RGGWCCY	1 cut(s)	1702
PshAI	GACNNNNGTC	2 cut(s)	316, 674
PshBI	ATTAAT	2 cut(s)	1056, 1773
Psp124BI	GAGCTC	2 cut(s)	8, 422
Psp5II	RGGWCCY	1 cut(s)	1702
Psp6I	CCWGG	3 cut(s)	227, 1261, 2084
PspFI	CCCAGC	1 cut(s)	1538
PspGI	CCWGG	3 cut(s)	227, 1261, 2084
PspN4I	GGNNCC	3 cut(s)	1312, 1703, 2438
PspPI	GGNCC	8 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2437, 2565
PspPPI	RGGWCCY	1 cut(s)	1702
PspXI	VCTCGAGB	2 cut(s)	151, 672
PsuI	RGATCY	4 cut(s)	994, 1296, 1440, 2383
PvuII	CAGCTG	2 cut(s)	77, 260
RsaI	GTAC	5 cut(s)	149, 369, 1312, 1914, 2392
RsaNI	GTAC	5 cut(s)	148, 368, 1311, 1913, 2391
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	2 cut(s)	8, 422
SatI	GCNGC	9 cut(s)	75, 78, 258, 261, 264, 267, 1498, 2160, 2808
Sau3AI	GATC	9 cut(s)	628, 765, 994, 1240, 1296, 1440, 1999, 2383, 2637
Sau96I	GGNCC	8 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2437, 2565
SchI	GAGTC	5 cut(s)	552, 664, 684, 1162, 1277
ScrFI	CCNGG	3 cut(s)	229, 1263, 2086
SduI	GDGCHC	4 cut(s)	8, 422, 513, 2650
SfaNI	GCATC	9 cut(s)	168, 553, 654, 684, 813, 1540, 1958, 2713, 2783
SfcI	CTRYAG	1 cut(s)	595
Sfr274I	CTCGAG	2 cut(s)	151, 672
SinI	GGWCC	7 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2565
SlaI	CTCGAG	2 cut(s)	151, 672
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	6 cut(s)	151, 672, 2059, 2090, 2423, 2850
SmoI	CTYRAG	6 cut(s)	151, 672, 2059, 2090, 2423, 2850
SphI	GCATGC	1 cut(s)	2834
SseBI	AGGCCT	1 cut(s)	831
SsiI	CCGC	2 cut(s)	264, 2151
SspI	AATATT	2 cut(s)	2207, 2469
SspMI	CTAG	9 cut(s)	189, 210, 308, 617, 911, 1352, 1941, 1946, 2634
SstI	GAGCTC	2 cut(s)	8, 422
StuI	AGGCCT	1 cut(s)	831
StyD4I	CCNGG	3 cut(s)	227, 1261, 2084
StyI	CCWWGG	5 cut(s)	69, 307, 723, 857, 1839
TaaI	ACNGT	5 cut(s)	1156, 1393, 1963, 1984, 2768
TaiI	ACGT	3 cut(s)	108, 1401, 1422
TaqI	TCGA	5 cut(s)	152, 162, 673, 821, 1768
TaqII	GACCGA	1 cut(s)	148
TatI	WGTACW	2 cut(s)	147, 1912
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	6 cut(s)	16, 818, 1622, 2081, 2534, 2653
TscAI	CASTG	3 cut(s)	105, 628, 1408
TseFI	GTSAC	2 cut(s)	1399, 1921
TseI	GCWGC	8 cut(s)	74, 77, 257, 260, 266, 1497, 2159, 2807
Tsp45I	GTSAC	2 cut(s)	1399, 1921
TspGWI	ACGGA	4 cut(s)	430, 1194, 2735, 2757
TspRI	CASTG	3 cut(s)	105, 628, 1408
Vha464I	CTTAAG	1 cut(s)	2090
VpaK11BI	GGWCC	7 cut(s)	131, 311, 1247, 1662, 1702, 2231, 2565
VspI	ATTAAT	2 cut(s)	1056, 1773
XapI	RAATTY	3 cut(s)	956, 2038, 2399
XbaI	TCTAGA	1 cut(s)	1351
XceI	RCATGY	1 cut(s)	2834
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 2682
XhoI	CTCGAG	2 cut(s)	151, 672
XmaJI	CCTAGG	1 cut(s)	307
XmiI	GTMKAC	3 cut(s)	120, 522, 2219
XmnI	GAANNNNTTC	2 cut(s)	1347, 2787
XspI	CTAG	9 cut(s)	189, 210, 308, 617, 911, 1352, 1941, 1946, 2634
ZraI	GACGTC	1 cut(s)	1399
Zsp2I	ATGCAT	2 cut(s)	1045, 2832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.