Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Reverse (-)

25953269 .. 25956558

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG160700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2787 bp

ATGGCCCTTTCAGACTTCTATGCTTCTCATACTTACTATAACACTAGATTGGTTTTGAACACTAGAGAGTCCAAACAAAATGTTGTCAGTGCAGCTTCTGCAGCTCTAGATCTGATAGAGAATGCACATGTGCAAGCAATCCTAGGACCAGTGACATCAATGGAAGAGAGCTTTGTTATAAATCTTGGGGAGCAAGCTGAGGTGCCCATTATATCATTCTCTGCAACAAGCCCTTCTCTTACTTCACTGCGAAGCTCCTACTTTTTTCAGTTTGCACAAAATGACTCGACCCAAGTAAAAGCAGTAAGTGCAGTTGTAAAAGGTTTTGGATGGAGGCAAGTGGTGCTCATATACGTAGACAATGAGTTTGGGGAAGGAGTCGTACCATATTTAACTGATGCCTTGGAGGAGGTTGATGCCCGTGTACCATACCGGAGCATCATTTCCCTATCAGCCACAGATAGCCAAATAGTCGAAGAGCTTTACAAGCTAATGACGATGCAAACAAGGGTCTTCATCGTCCACATGACAACTGATTTGTCATCCAGGCTATTTGCCAAGGCAAAAGAGATTGGAATGATGAGTGAAGGCTATGTTTGGCTCACAACTAACAGCATACCTAATAGTTTGAAGTTTCTGAATTCTTCAGCCATAAATTCCATGCAAGGAGTATTAGGTGTGCAAACTTACATTCCAGCAACTGTAGAGTTCGAAGAATTCAAGCTCCGGTGGAAACGACAATTCCGCAAAGACAATCCAACCATCATTGGTGCTGAGTTGAATATTTTTGCATTGTGGGCTTACGATGCTGCCTTTGCATTGGCCATGGCAATTGAAGAAGTAAGGACTACAAGCTTTGGTTTCCAAAGGAGCAATGCTTCCATCAACTCATCAACAGATCTTGAAAGTTTTGAGGTCTCTCAATATGGTCCAAAACTTTGCCAAGCACTGTCACTTACTAGATTTGAAGGCATAGCTGGAAATTTCAGCCTTGTTGATGGGCAGCGTCAAACATCAATTTTTCAGATAGTCAATATAAATGGTCGTGGAGCTAGAACAGTTGGATTTTGGACCTTGAAAAATGGAATCATGAGAAAATTGGGTTCACCATCATCAGTAAACTCGAGCATAAGTTCAACTTCTAAAGGCGATCTTGGACCAATTATATGGCCCGGAGATTCAATCTCTGTTCCCAAAGGATGGGTAAACCCAGCAAACGGCAAGAAGTTGAGAATAGGAGTTCCCGTAGAGGAAGGTTTCACTGAGTTCGTTTCTGTGACAAAAGATCCAAGCACTAACACAACATATGTCACAGGGTTCAGTATTGACGTCTTTAAGGCTGCAGTGGACATATTACCTTATGCTCTTTCTTACGAGTTGATTCCCTTTGCAAATCCTGATGGCAGAATGGCTGGCACTTACAATGATTTGTGCTATCAAGTATATCTTGGGAAGTTTGATGCTGTGGTGGGAGATGTAACAATTAGAGGAAGTAGATCATTGTATGTAGATTTTACCATGCCATACACAGAATCTGGTGTTGTGATGGTTGTGCCACTCAAAGACATCAGGAGAAAAAGTGCGTGGGTTTTCTTAAAGCCTTTGACATGGGATCTTTGGCTGACAACCTCTTGTTTCTTTGTCCTTATTGGTTTCGTGGTTTGGGTTCTTGAACATCGAATCAATGCAGATTTTCGTGGCCCTCCCTCATATCAAGTTGGCACGAGCATCTGGTTTTCTTTCTCGACCATGGTTTTTTCACACAGGGAGAGAGTAGTTAGCAACTTGGCTAGATTTGTGATGATTATATGGGTATTTGTTATGCTAATATTGACACAAAGTTACACGGCTAATCTTGCGTCACTATTAACAGTCCAAAAACTTTACCCTGTTGTTACTGATCTAAAGCATTACTTAAGGAATGGGGATACTGTTGGCTACCAAAACAATACATATATTTATGATATCTTAAAAGAAATAGGCTTTGATGAGTCCAAGCTTAAGGCATATAAATCTGTTGAAGAATGTGATGCTCTTCTTTCGAAAGGCAGTGAAAATGGTGGTATTGCAGCTGCTATTGATGAAACTCCCAACATGAAGCTTTTTCTTGCAAAATATTGTTCCAAATATACTATGGTTGGACCAATTTTTAAAACTGATGGCTTTGCCTTTGTCTTTCCAAAAGGTTCTCCTCTTCTTCATGATGTTTCGCAAGCAATCCTAAACGTGACCGAAGGGGAGGTTATACTGAACATTGAAAACAAATGGTTCAATAAAGAAGGCAGTTGTCAAGATAACTCCAACCCAGGAGTTTCTAGCAACAGGCTTGGCCTTGAAACCTTTTGGGGCCTATTCCTCATTGCCGGGGTGGCTTCAGTACTCGCCCTCATCATATTTCTAGCTTCCTTCCTTTACGAGCATAGGCACGTTTTGATTCACACTGATCCAGGAGCCTCTACACAAGGAAAATTTCGAACTATGTTAGAAATTTTTAATGAAAAAGATTTTAGTTCTCATACATTTAAAACCACTCAACGAGATAGAGTCGCTAATGTGGGAGATGCAGTTAATGCCATACTAAACAACTGCTTGGAAATTCCATTGGGAGACAGTTCAGACAGCGCAGATCCAAGTTCTCAGTTCATTGGAGAGCAACAAAATAGTACTACGACACCATCTACTGGTCAAGAGTCTGCAGAGGTGAATCCAGCTACTGAGGTTGATATAACAAATGATGGGGAAATGGAAGGCACTCCTGAAAGAGCTCAACATTTCTCCGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

928

Amino Acids

102.82

Weight (kDa)

5.24

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 348	3.1e-79	Receptor family ligand binding region
Peripla_BP_6	PF13458	1 - 283	2.9e-19	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	428 - 518	2e-06	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	435 - 758	1.2e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	536 - 791	9.2e-39	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AatII	GACGTC	1 cut(s)	1332
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	2 cut(s)	1200, 2681
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	4 cut(s)	1280, 1620, 2438, 2621
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	7 cut(s)	640, 655, 716, 982, 2468, 2487, 2595
AcuI	CTGAAG	2 cut(s)	630, 2358
AcyI	GRCGYC	1 cut(s)	1329
AfaI	GTAC	4 cut(s)	384, 426, 2379, 2665
AfiI	CCNNNNNNNGG	3 cut(s)	1200, 1217, 2681
AflII	CTTAAG	2 cut(s)	1915, 2000
AflIII	ACRYGT	1 cut(s)	127
AjnI	CCWGG	3 cut(s)	545, 2305, 2446
Alw21I	GWGCWC	2 cut(s)	348, 2767
Alw26I	GTCTC	2 cut(s)	922, 2601
AlwI	GGATC	4 cut(s)	1280, 1620, 2438, 2621
AlwNI	CAGNNNCTG	4 cut(s)	98, 701, 1535, 2714
Ama87I	CYCGRG	1 cut(s)	1123
AoxI	GGCC	6 cut(s)	3, 822, 1169, 1699, 2329, 2347
ApeKI	GCWGC	7 cut(s)	92, 101, 809, 1003, 1340, 2069, 2072
ApoI	RAATTY	7 cut(s)	640, 655, 716, 982, 2468, 2487, 2595
ArsI	GACNNNNNNTTYG	4 cut(s)	350, 382, 520, 552
AspA2I	CCTAGG	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	2624
AspS9I	GGNCC	9 cut(s)	4, 146, 929, 1071, 1157, 1170, 1700, 2141, 2347
AsuC2I	CCSGG	2 cut(s)	1173, 2365
AsuHPI	GGTGA	2 cut(s)	1098, 2713
AsuII	TTCGAA	3 cut(s)	711, 2042, 2473
AvaI	CYCGRG	1 cut(s)	1123
AvaII	GGWCC	5 cut(s)	146, 929, 1071, 1157, 2141
AvrII	CCTAGG	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	824
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	2767
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BauI	CACGAG	1 cut(s)	1723
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	2 cut(s)	348, 2767
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	7 cut(s)	104, 113, 796, 1015, 1327, 2059, 2081
BceAI	ACGGC	2 cut(s)	1234, 1863
BciT130I	CCWGG	3 cut(s)	547, 2307, 2448
BciVI	GTATCC	1 cut(s)	1921
BcnI	CCSGG	2 cut(s)	1173, 2365
BcoDI	GTCTC	2 cut(s)	922, 2601
BfaI	CTAG	9 cut(s)	45, 63, 107, 143, 960, 1053, 1791, 2316, 2399
BfmI	CTRYAG	4 cut(s)	99, 702, 1341, 2694
BfrI	CTTAAG	2 cut(s)	1915, 2000
BfuI	GTATCC	1 cut(s)	1921
BglI	GCCNNNNNGGC	1 cut(s)	2369
BglII	AGATCT	2 cut(s)	109, 898
BisI	GCNGC	7 cut(s)	93, 102, 810, 1004, 1341, 2070, 2073
BlnI	CCTAGG	1 cut(s)	142
BlsI	GCNGC	7 cut(s)	94, 103, 811, 1005, 1342, 2071, 2074
BmcAI	AGTACT	2 cut(s)	2379, 2665
Bme1390I	CCNGG	5 cut(s)	547, 1173, 2307, 2365, 2448
Bme18I	GGWCC	5 cut(s)	146, 929, 1071, 1157, 2141
BmeT110I	CYCGRG	1 cut(s)	1123
BmgT120I	GGNCC	9 cut(s)	4, 146, 929, 1071, 1157, 1170, 1700, 2141, 2347
BmiI	GGNNCC	3 cut(s)	204, 2348, 2452
BmrFI	CCNGG	5 cut(s)	547, 1173, 2307, 2365, 2448
BmsI	GCATC	9 cut(s)	388, 406, 447, 489, 796, 1450, 1737, 2020, 2551
BpiI	GAAGAC	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu14I	TTCGAA	3 cut(s)	711, 2042, 2473
BpuMI	CCSGG	2 cut(s)	1173, 2365
BsaAI	YACGTR	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	1329
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	7 cut(s)	142, 402, 558, 825, 1749, 2305, 2364
BsaWI	WCCGGW	2 cut(s)	432, 726
BsaXI	ACNNNNNCTCC	6 cut(s)	1230, 1260, 1564, 1594, 2550, 2580
Bsc4I	CCNNNNNNNGG	3 cut(s)	1200, 1217, 2681
Bse1I	ACTGG	2 cut(s)	149, 2686
Bse3DI	GCAATG	2 cut(s)	880, 2358
BseBI	CCWGG	3 cut(s)	547, 2307, 2448
BseDI	CCNNGG	7 cut(s)	142, 402, 558, 825, 1749, 2305, 2364
BseGI	GGATG	3 cut(s)	335, 542, 1205
BseLI	CCNNNNNNNGG	3 cut(s)	1200, 1217, 2681
BseMI	GCAATG	2 cut(s)	880, 2358
BseMII	CTCAG	5 cut(s)	189, 765, 1254, 2651, 2706
BseNI	ACTGG	2 cut(s)	149, 2686
BseRI	GAGGAG	2 cut(s)	422, 2181
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	7 cut(s)	104, 113, 796, 1015, 1327, 2059, 2081
BseYI	CCCAGC	1 cut(s)	1210
BsgI	GTGCAG	2 cut(s)	111, 330
BshFI	GGCC	6 cut(s)	5, 824, 1171, 1701, 2331, 2349
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	348, 2767
BsiHKCI	CYCGRG	1 cut(s)	1123
BsiSI	CCGG	4 cut(s)	433, 727, 1173, 2364
BslI	CCNNNNNNNGG	3 cut(s)	1200, 1217, 2681
BsmAI	GTCTC	2 cut(s)	922, 2601
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	6 cut(s)	5, 824, 1171, 1701, 2331, 2349
Bso31I	GGTCTC	1 cut(s)	922
BsoBI	CYCGRG	1 cut(s)	1123
Bsp119I	TTCGAA	3 cut(s)	711, 2042, 2473
Bsp1286I	GDGCHC	3 cut(s)	207, 348, 2767
Bsp143I	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
Bsp19I	CCATGG	2 cut(s)	825, 1749
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	6 cut(s)	5, 824, 1171, 1701, 2331, 2349
BspCNI	CTCAG	5 cut(s)	190, 766, 1255, 2650, 2707
BspHI	TCATGA	2 cut(s)	1089, 2200
BspLI	GGNNCC	3 cut(s)	204, 2348, 2452
BspMAI	CTGCAG	3 cut(s)	103, 1345, 2698
BspPI	GGATC	4 cut(s)	1280, 1620, 2438, 2621
BspQI	GCTCTTC	2 cut(s)	471, 2040
BspT104I	TTCGAA	3 cut(s)	711, 2042, 2473
BspT107I	GGYRCC	1 cut(s)	202
BspTI	CTTAAG	2 cut(s)	1915, 2000
BspTNI	GGTCTC	1 cut(s)	922
BsrDI	GCAATG	2 cut(s)	880, 2358
BsrI	ACTGG	2 cut(s)	149, 2686
BssECI	CCNNGG	7 cut(s)	142, 402, 558, 825, 1749, 2305, 2364
BssMI	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
BssNI	GRCGYC	1 cut(s)	1329
BssSI	CACGAG	1 cut(s)	1723
BssT1I	CCWWGG	5 cut(s)	142, 402, 558, 825, 1749
Bst2BI	CACGAG	1 cut(s)	1723
Bst2UI	CCWGG	3 cut(s)	547, 2307, 2448
Bst4CI	ACNGT	6 cut(s)	703, 951, 1060, 1873, 1933, 2612
Bst6I	CTCTTC	4 cut(s)	159, 471, 2040, 2199
BstACI	GRCGYC	1 cut(s)	1329
BstAFI	CTTAAG	2 cut(s)	1915, 2000
BstAPI	GCANNNNNTGC	4 cut(s)	98, 308, 343, 2570
BstBAI	YACGTR	1 cut(s)	355
BstBI	TTCGAA	3 cut(s)	711, 2042, 2473
BstC8I	GCNNGC	4 cut(s)	135, 195, 1414, 2214
BstDEI	CTNAG	5 cut(s)	198, 774, 1263, 2637, 2715
BstDSI	CCRYGG	2 cut(s)	825, 1749
BstF5I	GGATG	3 cut(s)	335, 542, 1205
BstHHI	GCGC	1 cut(s)	2624
BstKTI	GATC	9 cut(s)	112, 901, 1153, 1288, 1499, 1615, 1903, 2446, 2629
BstMAI	GTCTC	2 cut(s)	922, 2601
BstMBI	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
BstNI	CCWGG	3 cut(s)	547, 2307, 2448
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	5 cut(s)	545, 1171, 2305, 2363, 2446
BstSFI	CTRYAG	4 cut(s)	99, 702, 1341, 2694
BstSLI	GKGCMC	1 cut(s)	207
BstSNI	TACGTA	1 cut(s)	355
BstV1I	GCAGC	7 cut(s)	104, 113, 796, 1015, 1327, 2059, 2081
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	5 cut(s)	109, 898, 1285, 1612, 2626
BstXI	CCANNNNNNTGG	1 cut(s)	1167
BstYI	RGATCY	5 cut(s)	109, 898, 1285, 1612, 2626
BsuI	GTATCC	1 cut(s)	1921
BsuRI	GGCC	6 cut(s)	5, 824, 1171, 1701, 2331, 2349
BtgI	CCRYGG	2 cut(s)	825, 1749
BtsCI	GGATG	3 cut(s)	335, 542, 1205
BtsI	GCAGTG	3 cut(s)	245, 1350, 2056
BtsIMutI	CAGTG	8 cut(s)	94, 156, 245, 947, 1260, 1350, 2056, 2439
Cac8I	GCNNGC	4 cut(s)	135, 195, 1414, 2214
CaiI	CAGNNNCTG	4 cut(s)	98, 701, 1535, 2714
CciI	TCATGA	2 cut(s)	1089, 2200
CfoI	GCGC	1 cut(s)	2624
Cfr13I	GGNCC	9 cut(s)	4, 146, 929, 1071, 1157, 1170, 1700, 2141, 2347
CseI	GACGC	2 cut(s)	995, 1848
Csp6I	GTAC	4 cut(s)	383, 425, 2378, 2664
CviQI	GTAC	4 cut(s)	383, 425, 2378, 2664
DdeI	CTNAG	5 cut(s)	198, 774, 1263, 2637, 2715
DpnI	GATC	9 cut(s)	111, 900, 1152, 1287, 1498, 1614, 1902, 2445, 2628
DpnII	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
DraI	TTTAAA	2 cut(s)	2152, 2524
EaeI	YGGCCR	1 cut(s)	822
Eam1104I	CTCTTC	4 cut(s)	159, 471, 2040, 2199
EarI	CTCTTC	4 cut(s)	159, 471, 2040, 2199
Ecl136II	GAGCTC	1 cut(s)	2765
Eco105I	TACGTA	1 cut(s)	355
Eco130I	CCWWGG	5 cut(s)	142, 402, 558, 825, 1749
Eco24I	GRGCYC	1 cut(s)	2767
Eco31I	GGTCTC	1 cut(s)	922
Eco32I	GATATC	1 cut(s)	1966
Eco47I	GGWCC	5 cut(s)	146, 929, 1071, 1157, 2141
Eco53kI	GAGCTC	1 cut(s)	2765
Eco57I	CTGAAG	2 cut(s)	630, 2358
Eco88I	CYCGRG	1 cut(s)	1123
EcoICRI	GAGCTC	1 cut(s)	2765
EcoO109I	RGGNCCY	1 cut(s)	2347
EcoRI	GAATTC	2 cut(s)	640, 716
EcoRII	CCWGG	3 cut(s)	545, 2305, 2446
EcoRV	GATATC	1 cut(s)	1966
EcoT14I	CCWWGG	5 cut(s)	142, 402, 558, 825, 1749
EcoT38I	GRGCYC	1 cut(s)	2767
ErhI	CCWWGG	5 cut(s)	142, 402, 558, 825, 1749
FalI	AAGNNNNNCTT	8 cut(s)	1123, 1155, 1137, 1169, 1431, 1463, 1898, 1930
FauNDI	CATATG	1 cut(s)	1306
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	7 cut(s)	93, 102, 810, 1004, 1341, 2070, 2073
FokI	GGATG	3 cut(s)	342, 529, 1212
FriOI	GRGCYC	1 cut(s)	2767
Fsp4HI	GCNGC	7 cut(s)	93, 102, 810, 1004, 1341, 2070, 2073
FspBI	CTAG	9 cut(s)	45, 63, 107, 143, 960, 1053, 1791, 2316, 2399
GlaI	GCGC	1 cut(s)	2623
GluI	GCNGC	7 cut(s)	93, 102, 810, 1004, 1341, 2070, 2073
GsaI	CCCAGC	1 cut(s)	1214
HaeIII	GGCC	6 cut(s)	5, 824, 1171, 1701, 2331, 2349
HapII	CCGG	4 cut(s)	433, 727, 1173, 2364
HgaI	GACGC	2 cut(s)	995, 1848
HhaI	GCGC	1 cut(s)	2624
Hin1I	GRCGYC	1 cut(s)	1329
Hin6I	GCGC	1 cut(s)	2622
HinP1I	GCGC	1 cut(s)	2622
HindIII	AAGCTT	3 cut(s)	853, 1997, 2099
HpaII	CCGG	4 cut(s)	433, 727, 1173, 2364
HphI	GGTGA	2 cut(s)	1098, 2713
Hpy166II	GTNNAC	7 cut(s)	358, 425, 523, 1106, 1120, 1207, 1348
Hpy188I	TCNGA	6 cut(s)	13, 114, 639, 1026, 2617, 2779
Hpy8I	GTNNAC	7 cut(s)	358, 425, 523, 1106, 1120, 1207, 1348
HpyAV	CCTTC	9 cut(s)	243, 368, 581, 962, 1247, 2228, 2273, 2416, 2741
HpyCH4III	ACNGT	6 cut(s)	703, 951, 1060, 1873, 1933, 2612
HpyCH4IV	ACGT	4 cut(s)	354, 1329, 2226, 2427
HpyF3I	CTNAG	5 cut(s)	198, 774, 1263, 2637, 2715
HpySE526I	ACGT	4 cut(s)	354, 1329, 2226, 2427
Hsp92I	GRCGYC	1 cut(s)	1329
HspAI	GCGC	1 cut(s)	2622
Kzo9I	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
LguI	GCTCTTC	2 cut(s)	471, 2040
LmnI	GCTCC	7 cut(s)	190, 260, 435, 729, 870, 1049, 2450
Lsp1109I	GCAGC	7 cut(s)	104, 113, 796, 1015, 1327, 2059, 2081
LweI	GCATC	9 cut(s)	388, 406, 447, 489, 796, 1450, 1737, 2020, 2551
MaeI	CTAG	9 cut(s)	45, 63, 107, 143, 960, 1053, 1791, 2316, 2399
MaeII	ACGT	4 cut(s)	354, 1329, 2226, 2427
MaeIII	GTNAC	9 cut(s)	151, 951, 1276, 1309, 1477, 1841, 1860, 1894, 2227
MalI	GATC	9 cut(s)	111, 900, 1152, 1287, 1498, 1614, 1902, 2445, 2628
MboI	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	5 cut(s)	109, 898, 1285, 1612, 2626
MhlI	GDGCHC	3 cut(s)	207, 348, 2767
MlsI	TGGCCA	1 cut(s)	824
MluNI	TGGCCA	1 cut(s)	824
MlyI	GAGTC	6 cut(s)	77, 278, 387, 2000, 2553, 2699
MmeI	TCCRAC	4 cut(s)	782, 1042, 2119, 2325
Mox20I	TGGCCA	1 cut(s)	824
MscI	TGGCCA	1 cut(s)	824
Msp20I	TGGCCA	1 cut(s)	824
MspA1I	CMGCKG	1 cut(s)	2072
MspCI	CTTAAG	2 cut(s)	1915, 2000
MspI	CCGG	4 cut(s)	433, 727, 1173, 2364
MspR9I	CCNGG	5 cut(s)	547, 1173, 2307, 2365, 2448
MunI	CAATTG	1 cut(s)	831
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	3 cut(s)	547, 2307, 2448
NciI	CCSGG	2 cut(s)	1173, 2365
NcoI	CCATGG	2 cut(s)	825, 1749
NdeI	CATATG	1 cut(s)	1306
NdeII	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
NlaIV	GGNNCC	3 cut(s)	204, 2348, 2452
NmuCI	GTSAC	6 cut(s)	151, 951, 1276, 1309, 1860, 2227
NspI	RCATGY	1 cut(s)	131
NspV	TTCGAA	3 cut(s)	711, 2042, 2473
PaeR7I	CTCGAG	1 cut(s)	1123
PagI	TCATGA	2 cut(s)	1089, 2200
PciI	ACATGT	1 cut(s)	127
PciSI	GCTCTTC	2 cut(s)	471, 2040
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	7 cut(s)	1086, 1178, 1381, 1532, 1680, 2434, 2704
PflMI	CCANNNNNTGG	2 cut(s)	1200, 2681
PfoI	TCCNGGA	1 cut(s)	2446
PkrI	GCNGC	7 cut(s)	94, 103, 811, 1005, 1342, 2071, 2074
PleI	GAGTC	6 cut(s)	76, 278, 386, 1999, 2552, 2698
PpsI	GAGTC	6 cut(s)	76, 278, 386, 1999, 2552, 2698
Ppu21I	YACGTR	1 cut(s)	355
PscI	ACATGT	1 cut(s)	127
PsiI	TTATAA	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	2767
Psp6I	CCWGG	3 cut(s)	545, 2305, 2446
PspFI	CCCAGC	1 cut(s)	1210
PspGI	CCWGG	3 cut(s)	545, 2305, 2446
PspN4I	GGNNCC	3 cut(s)	204, 2348, 2452
PspPI	GGNCC	9 cut(s)	4, 146, 929, 1071, 1157, 1170, 1700, 2141, 2347
PspXI	VCTCGAGB	1 cut(s)	1123
PstI	CTGCAG	3 cut(s)	103, 1345, 2698
PstNI	CAGNNNCTG	4 cut(s)	98, 701, 1535, 2714
PsuI	RGATCY	5 cut(s)	109, 898, 1285, 1612, 2626
PvuII	CAGCTG	1 cut(s)	2072
RsaI	GTAC	4 cut(s)	384, 426, 2379, 2665
RsaNI	GTAC	4 cut(s)	383, 425, 2378, 2664
SacI	GAGCTC	1 cut(s)	2767
SapI	GCTCTTC	2 cut(s)	471, 2040
SatI	GCNGC	7 cut(s)	93, 102, 810, 1004, 1341, 2070, 2073
Sau3AI	GATC	9 cut(s)	109, 898, 1150, 1285, 1496, 1612, 1900, 2443, 2626
Sau96I	GGNCC	9 cut(s)	4, 146, 929, 1071, 1157, 1170, 1700, 2141, 2347
ScaI	AGTACT	2 cut(s)	2379, 2665
SchI	GAGTC	6 cut(s)	77, 278, 387, 2000, 2553, 2699
ScrFI	CCNGG	5 cut(s)	547, 1173, 2307, 2365, 2448
SduI	GDGCHC	3 cut(s)	207, 348, 2767
SfaNI	GCATC	9 cut(s)	388, 406, 447, 489, 796, 1450, 1737, 2020, 2551
SfcI	CTRYAG	4 cut(s)	99, 702, 1341, 2694
Sfr274I	CTCGAG	1 cut(s)	1123
SfuI	TTCGAA	3 cut(s)	711, 2042, 2473
SinI	GGWCC	5 cut(s)	146, 929, 1071, 1157, 2141
SlaI	CTCGAG	1 cut(s)	1123
SmlI	CTYRAG	3 cut(s)	1123, 1915, 2000
SmoI	CTYRAG	3 cut(s)	1123, 1915, 2000
SnaBI	TACGTA	1 cut(s)	355
SsiI	CCGC	1 cut(s)	745
SspI	AATATT	3 cut(s)	784, 1830, 2117
SspMI	CTAG	9 cut(s)	45, 63, 107, 143, 960, 1053, 1791, 2316, 2399
SstI	GAGCTC	1 cut(s)	2767
StyD4I	CCNGG	5 cut(s)	545, 1171, 2305, 2363, 2446
StyI	CCWWGG	5 cut(s)	142, 402, 558, 825, 1749
TaaI	ACNGT	6 cut(s)	703, 951, 1060, 1873, 1933, 2612
TaiI	ACGT	4 cut(s)	357, 1332, 2229, 2430
TaqI	TCGA	8 cut(s)	287, 474, 711, 1124, 1678, 1745, 2042, 2473
TaqII	GACCGA	1 cut(s)	2246
TatI	WGTACW	2 cut(s)	2377, 2663
TfiI	GAWTC	7 cut(s)	1086, 1178, 1381, 1532, 1680, 2434, 2704
TscAI	CASTG	8 cut(s)	94, 156, 252, 954, 1267, 1350, 2056, 2446
TseFI	GTSAC	6 cut(s)	151, 951, 1276, 1309, 1860, 2227
TseI	GCWGC	7 cut(s)	92, 101, 809, 1003, 1340, 2069, 2072
Tsp45I	GTSAC	6 cut(s)	151, 951, 1276, 1309, 1860, 2227
TspDTI	ATGAA	6 cut(s)	505, 2097, 2111, 2189, 2511, 2632
TspRI	CASTG	8 cut(s)	94, 156, 252, 954, 1267, 1350, 2056, 2446
Van91I	CCANNNNNTGG	2 cut(s)	1200, 2681
Vha464I	CTTAAG	2 cut(s)	1915, 2000
VpaK11BI	GGWCC	5 cut(s)	146, 929, 1071, 1157, 2141
XapI	RAATTY	7 cut(s)	640, 655, 716, 982, 2468, 2487, 2595
XbaI	TCTAGA	1 cut(s)	106
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2131
XhoI	CTCGAG	1 cut(s)	1123
XmaJI	CCTAGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	9 cut(s)	45, 63, 107, 143, 960, 1053, 1791, 2316, 2399
ZraI	GACGTC	1 cut(s)	1330
ZrmI	AGTACT	2 cut(s)	2379, 2665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.