Rh6DG160900

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000051
Physical Location & Seq
Forward (+)
24110855 .. 24121672
10818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG160900.1

Sequence Viewer

Length: 1986 bp
ATGCAAACCAACTTTGTAATTGATCTTGGAGAAAAAGCACGAGTTCCCATAATCTCATTTTCAGCGACAAGTCCTTCCCTCACTTCCCTTCCAAGTACATATTTTTTCCGAGCTGCACAGATTGATTCCTCTCAAGTCAAAGCCGTAGGGGCAATTATCAAAGCTTTTGGATGGAGAGAAGCTGTGCCAATCTATATTGACAATGAGTACGGCAACGGAGTATTACCATACTTGATCGACGCCTTGCAGATGGTTGAAGCTCGTGTCCCTTATCGAAGTGCCATTTCCGGGTCAGCAACGGATGATCAAATTGAAAAGGAGCTTTTCAAGTTGATGACAATGCAAACTAGAGTCTTCATTGTGCACATGCCCGGCCCTCTAGGCTCTCGGCTTTTTGCCAAGGCACAAAAGCTAGGGATGATGAATGAAGGCTATGTATGGATCATGACAGATGGATTGAGCAATATTTTAAGTTCAACAAATGCTTCAGTCACCAGTTCAATGCAGGGCGCACTGGGGCTGAGGACCTATGTGCCGAAAACAAAAGAACTTGTCGCTTTTAGAGAGCGATGGAAAAAGCAGTTCCACCAACAAAATCCAACCATCATTGATGTTGAACTAGATGTGTTTGCACTTTGGGCATATGATGCTGCTTATGCATTAGCCATGGCCGTTGAAGAACTTGGGACTACAAGCTTTGTCTTCCATGTGGTACATGATAATAGCACTAATACAACACCAGATGTTATTACTGGATTCTGTATTGACATCTTTAATGCTGCAATGGAAGGATTACCATATGCCGTTACTTATGACTTCATTCCCTTTGCATATTCAAATGGCAGTTCTGCGGGAACTTATGATGATTTGGTCTATCAGGTTTTCCTTGGGGATTATGATGCAGTGGCAGCAGATTCAACAATTAGAGCAAACAGGTCACTGTATGTGGACTTTACATTGCCATATACTGAATCTGGTGTAGTAATGGTAGTGCCAATGAAAGATAAAAACCAGATTAAAAATGCATGGATTTTCTTGAAGCCTTTGACATGGGACTTGTGGCTTGCGAGTTTCTTTTCCTTCGTCTTCATTGGTTTTGTGGTTTGGCTTCTTGAACACCGAGTAAATGAAGATTTTCGTGGGCCTCCCTCACATCAAGTTGGCACTGGCCTCTGGTTTGTGGTGATAGTATGGGTATTTGTGGTGCTCATACTGACTCAAAGTTACACAGCGAGTCTGACTTCACTGCTAACTGTGCAAAAGCTTGAGCCAACTTATACAAATATAAGCCATCTGATAAGCAATACTAAGGAGTATGTGGGCTACCTGGATGGCTCTTTTGTCTGCGACCTTTTACAACAAGGTTTCCATGCTTCCAATATTAGGAAGTATAAATCTTCACAAGAATGTAACCAACTTTTGATAAACGGGAGTCAAAACGGGGGTATTGCTGCAGCCATTGACGAAACTCCAAACATGAAGCTTTTTCTTGCAAATTATTGCTCCAGTTATACCATGATTGGTCCCATAATTAAAACTGATGGATTTGCCTTTGTTTTTCCTAAAGGTTCACCTCTTGTACCAGATGTATCAAGGTCGATTCTGCAATTCACCGAGGGAGACTTGATGAAGGAACTTGAACGCAAATGGTTCAGGAACGAAACATCTTGTTCAGGTAGCAACCCCATGGTGTCTGATTCTAGCAGTCTTAGCCTTGATAGGTTTTGGGGTCTGTTTCTGATTGCTGGCGTCACTTCGTTATTAGCCCTCATCATATTTGTAGCCTCATTTATATGGAGTTATCAGCACAAAGGAATTAGGGGTATGCTCAAAGTGTTTGACTGTAAAGACCTGAGCTCCCATACTTTTAAGAAGAAGAATTTGGGTGATCAGTTTGAGCGGTCACCAAGCTGTAGCATCTACTCAATAAACCCCTCGAATTTTAGCCATTCAAACCGTACAGATATTACAGAGATGGGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

661

Amino Acids

73.86

Weight (kDa)

5.65

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 2 - 242 3.4e-57 Receptor family ligand binding region
Peripla_BP_6 PF13458 7 - 231 2.7e-08 Periplasmic binding protein
Lig_chan-Glu_bd PF10613 233 - 332 3.3e-07 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 249 - 552 9.6e-09 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 350 - 395 5e-06 Ligand-gated ion channel
Lig_chan PF00060 393 - 584 3.7e-17 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1900
AciI CCGC 2 cut(s) 851, 1900
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 2 cut(s) 1879, 1939
AcuI CTGAAG 1 cut(s) 471
AcyI GRCGYC 2 cut(s) 240, 1749
AfaI GTAC 5 cut(s) 97, 209, 714, 1581, 1960
AfiI CCNNNNNNNGG 2 cut(s) 288, 1383
AjnI CCWGG 1 cut(s) 1326
AjuI GAANNNNNNNTTGG 2 cut(s) 1865, 1897
Alw21I GWGCWC 3 cut(s) 366, 1209, 1859
Alw26I GTCTC 1 cut(s) 1614
Alw44I GTGCAC 1 cut(s) 362
AlwI GGATC 1 cut(s) 449
AoxI GGCC 4 cut(s) 373, 669, 1142, 1168
ApaLI GTGCAC 1 cut(s) 362
ApeKI GCWGC 6 cut(s) 113, 650, 779, 908, 1451, 1454
ApoI RAATTY 2 cut(s) 1879, 1939
Asp700I GAANNNNTTC 1 cut(s) 1134
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 4 cut(s) 374, 525, 1142, 1523
AsuC2I CCSGG 2 cut(s) 289, 372
AsuHPI GGTGA 6 cut(s) 484, 1195, 1563, 1603, 1896, 1898
AvaII GGWCC 2 cut(s) 525, 1523
BaeGI GKGCMC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 1859
BauI CACGAG 2 cut(s) 39, 261
BbsI GAAGAC 3 cut(s) 346, 694, 1078
Bbv12I GWGCWC 3 cut(s) 366, 1209, 1859
BbvCI CCTCAGC 1 cut(s) 521
BbvI GCAGC 6 cut(s) 100, 637, 766, 920, 1438, 1466
BccI CCATC 9 cut(s) 165, 244, 446, 564, 611, 1299, 1325, 1535, 1969
BceAI ACGGC 4 cut(s) 128, 226, 656, 788
BciT130I CCWGG 1 cut(s) 1328
BclI TGATCA 2 cut(s) 304, 1888
BcnI CCSGG 2 cut(s) 289, 372
BcoDI GTCTC 1 cut(s) 1614
BfaI CTAG 5 cut(s) 348, 380, 413, 620, 1701
BfmI CTRYAG 2 cut(s) 1452, 1912
BglI GCCNNNNNGGC 2 cut(s) 149, 381
BisI GCNGC 6 cut(s) 114, 651, 780, 909, 1452, 1455
BlsI GCNGC 6 cut(s) 115, 652, 781, 910, 1453, 1456
Bme1390I CCNGG 3 cut(s) 289, 372, 1328
Bme18I GGWCC 2 cut(s) 525, 1523
BmgT120I GGNCC 4 cut(s) 374, 525, 1142, 1523
BmiI GGNNCC 1 cut(s) 1525
BmrFI CCNGG 3 cut(s) 289, 372, 1328
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 3 cut(s) 637, 889, 1926
BmuI ACTGGG 1 cut(s) 524
BpiI GAAGAC 3 cut(s) 346, 694, 1078
BpmI CTGGAG 1 cut(s) 1489
Bpu10I CCTNAGC 2 cut(s) 521, 1853
BpuEI CTTGAG 2 cut(s) 117, 1286
BpuMI CCSGG 2 cut(s) 289, 372
BsaHI GRCGYC 2 cut(s) 240, 1749
BsaJI CCNNGG 5 cut(s) 399, 666, 886, 1614, 1686
BsaXI ACNNNNNCTCC 2 cut(s) 1841, 1871
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 1383
Bse1I ACTGG 5 cut(s) 495, 519, 757, 1171, 1506
Bse3DI GCAATG 2 cut(s) 789, 956
BseBI CCWGG 1 cut(s) 1328
BseDI CCNNGG 5 cut(s) 399, 666, 886, 1614, 1686
BseGI GGATG 4 cut(s) 176, 307, 423, 1336
BseLI CCNNNNNNNGG 2 cut(s) 288, 1383
BseMI GCAATG 2 cut(s) 789, 956
BseMII CTCAG 2 cut(s) 512, 1844
BseNI ACTGG 5 cut(s) 495, 519, 757, 1171, 1506
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 6 cut(s) 100, 637, 766, 920, 1438, 1466
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 4 cut(s) 375, 671, 1144, 1170
BsiHKAI GWGCWC 3 cut(s) 366, 1209, 1859
BsiSI CCGG 2 cut(s) 288, 372
BslFI GGGAC 4 cut(s) 251, 700, 1067, 1509
BslI CCNNNNNNNGG 2 cut(s) 288, 1383
BsmAI GTCTC 1 cut(s) 1614
BsmFI GGGAC 4 cut(s) 251, 700, 1067, 1509
BsnI GGCC 4 cut(s) 375, 671, 1144, 1170
Bsp1286I GDGCHC 3 cut(s) 366, 1209, 1859
Bsp143I GATC 5 cut(s) 22, 234, 304, 441, 1888
Bsp19I CCATGG 2 cut(s) 666, 1686
BspACI CCGC 2 cut(s) 851, 1900
BspANI GGCC 4 cut(s) 375, 671, 1144, 1170
BspCNI CTCAG 2 cut(s) 513, 1845
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 1525
BspMAI CTGCAG 1 cut(s) 1456
BspPI GGATC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 1900
BsrDI GCAATG 2 cut(s) 789, 956
BsrI ACTGG 5 cut(s) 495, 519, 757, 1171, 1506
BssECI CCNNGG 5 cut(s) 399, 666, 886, 1614, 1686
BssMI GATC 5 cut(s) 22, 234, 304, 441, 1888
BssNI GRCGYC 2 cut(s) 240, 1749
BssSI CACGAG 2 cut(s) 39, 261
BssT1I CCWWGG 4 cut(s) 399, 666, 886, 1686
Bst2BI CACGAG 2 cut(s) 39, 261
Bst2UI CCWGG 1 cut(s) 1328
Bst4CI ACNGT 4 cut(s) 942, 1255, 1844, 1958
BstACI GRCGYC 2 cut(s) 240, 1749
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 1065, 1747
BstDEI CTNAG 4 cut(s) 521, 1308, 1709, 1853
BstDSI CCRYGG 2 cut(s) 666, 1686
BstEII GGTNACC 1 cut(s) 1902
BstF5I GGATG 4 cut(s) 176, 307, 423, 1336
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 5 cut(s) 25, 237, 307, 444, 1891
BstMAI GTCTC 1 cut(s) 1614
BstMBI GATC 5 cut(s) 22, 234, 304, 441, 1888
BstMWI GCNNNNNNNGC 8 cut(s) 149, 381, 638, 647, 656, 908, 1255, 1710
BstNI CCWGG 1 cut(s) 1328
BstNSI RCATGY 1 cut(s) 370
BstPI GGTNACC 1 cut(s) 1902
BstSCI CCNGG 3 cut(s) 287, 370, 1326
BstSFI CTRYAG 2 cut(s) 1452, 1912
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 6 cut(s) 100, 637, 766, 920, 1438, 1466
BstV2I GAAGAC 3 cut(s) 346, 694, 1078
BsuRI GGCC 4 cut(s) 375, 671, 1144, 1170
BtgI CCRYGG 2 cut(s) 666, 1686
BtgZI GCGATG 1 cut(s) 583
BtsCI GGATG 4 cut(s) 176, 307, 423, 1336
BtsI GCAGTG 2 cut(s) 909, 1244
BtsIMutI CAGTG 5 cut(s) 512, 909, 938, 1164, 1244
Cac8I GCNNGC 2 cut(s) 1065, 1747
CciI TCATGA 1 cut(s) 444
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 4 cut(s) 374, 525, 1142, 1523
CseI GACGC 2 cut(s) 248, 1738
Csp6I GTAC 5 cut(s) 96, 208, 713, 1580, 1959
CviQI GTAC 5 cut(s) 96, 208, 713, 1580, 1959
DdeI CTNAG 4 cut(s) 521, 1308, 1709, 1853
DpnI GATC 5 cut(s) 24, 236, 306, 443, 1890
DpnII GATC 5 cut(s) 22, 234, 304, 441, 1888
EaeI YGGCCR 1 cut(s) 669
Ecl136II GAGCTC 1 cut(s) 1857
Eco130I CCWWGG 4 cut(s) 399, 666, 886, 1686
Eco24I GRGCYC 1 cut(s) 1859
Eco47I GGWCC 2 cut(s) 525, 1523
Eco53kI GAGCTC 1 cut(s) 1857
Eco57I CTGAAG 1 cut(s) 471
Eco91I GGTNACC 1 cut(s) 1902
EcoICRI GAGCTC 1 cut(s) 1857
EcoO109I RGGNCCY 1 cut(s) 525
EcoO65I GGTNACC 1 cut(s) 1902
EcoRII CCWGG 1 cut(s) 1326
EcoT14I CCWWGG 4 cut(s) 399, 666, 886, 1686
EcoT22I ATGCAT 2 cut(s) 661, 1027
EcoT38I GRGCYC 1 cut(s) 1859
ErhI CCWWGG 4 cut(s) 399, 666, 886, 1686
FaqI GGGAC 4 cut(s) 251, 700, 1067, 1509
FauI CCCGC 1 cut(s) 844
FauNDI CATATG 2 cut(s) 643, 799
FbaI TGATCA 2 cut(s) 304, 1888
Fnu4HI GCNGC 6 cut(s) 114, 651, 780, 909, 1452, 1455
FokI GGATG 4 cut(s) 183, 314, 430, 1343
FriOI GRGCYC 1 cut(s) 1859
Fsp4HI GCNGC 6 cut(s) 114, 651, 780, 909, 1452, 1455
FspBI CTAG 5 cut(s) 348, 380, 413, 620, 1701
GlaI GCGC 1 cut(s) 511
GluI GCNGC 6 cut(s) 114, 651, 780, 909, 1452, 1455
GsuI CTGGAG 1 cut(s) 1489
HaeIII GGCC 4 cut(s) 375, 671, 1144, 1170
HapII CCGG 2 cut(s) 288, 372
HgaI GACGC 2 cut(s) 248, 1738
HhaI GCGC 1 cut(s) 512
Hin1I GRCGYC 2 cut(s) 240, 1749
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HindIII AAGCTT 4 cut(s) 162, 694, 1262, 1481
HpaII CCGG 2 cut(s) 288, 372
HphI GGTGA 6 cut(s) 484, 1195, 1563, 1603, 1896, 1898
Hpy166II GTNNAC 3 cut(s) 364, 949, 1571
Hpy188I TCNGA 5 cut(s) 110, 1239, 1296, 1696, 1740
Hpy188III TCNNGA 4 cut(s) 445, 1036, 1112, 1654
Hpy8I GTNNAC 3 cut(s) 364, 949, 1571
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 6 cut(s) 84, 98, 422, 782, 1090, 1624
HpyCH4III ACNGT 4 cut(s) 942, 1255, 1844, 1958
HpyF10VI GCNNNNNNNGC 8 cut(s) 149, 381, 638, 647, 656, 908, 1255, 1710
HpyF3I CTNAG 4 cut(s) 521, 1308, 1709, 1853
Hsp92I GRCGYC 2 cut(s) 240, 1749
HspAI GCGC 1 cut(s) 510
Ksp22I TGATCA 2 cut(s) 304, 1888
Kzo9I GATC 5 cut(s) 22, 234, 304, 441, 1888
LmnI GCTCC 3 cut(s) 319, 1508, 1862
Lsp1109I GCAGC 6 cut(s) 100, 637, 766, 920, 1438, 1466
LweI GCATC 3 cut(s) 637, 889, 1926
MaeI CTAG 5 cut(s) 348, 380, 413, 620, 1701
MaeIII GTNAC 7 cut(s) 490, 805, 936, 1223, 1409, 1750, 1902
MalI GATC 5 cut(s) 24, 236, 306, 443, 1890
MbiI CCGCTC 1 cut(s) 1900
MboI GATC 5 cut(s) 22, 234, 304, 441, 1888
MboII GAAGA 8 cut(s) 346, 689, 694, 1078, 1142, 1389, 1885, 1888
MhlI GDGCHC 3 cut(s) 366, 1209, 1859
MlyI GAGTC 4 cut(s) 360, 1210, 1243, 1441
MmeI TCCRAC 1 cut(s) 623
Mph1103I ATGCAT 2 cut(s) 661, 1027
MroXI GAANNNNTTC 1 cut(s) 1134
MseI TTAA 5 cut(s) 470, 774, 1017, 1533, 1869
MslI CAYNNNNRTG 2 cut(s) 1405, 1792
MspI CCGG 2 cut(s) 288, 372
MspR9I CCNGG 3 cut(s) 289, 372, 1328
MvaI CCWGG 1 cut(s) 1328
MwoI GCNNNNNNNGC 8 cut(s) 149, 381, 638, 647, 656, 908, 1255, 1710
NciI CCSGG 2 cut(s) 289, 372
NcoI CCATGG 2 cut(s) 666, 1686
NdeI CATATG 2 cut(s) 643, 799
NdeII GATC 5 cut(s) 22, 234, 304, 441, 1888
NlaIV GGNNCC 1 cut(s) 1525
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 4 cut(s) 490, 936, 1750, 1902
NsiI ATGCAT 2 cut(s) 661, 1027
NspI RCATGY 1 cut(s) 370
PagI TCATGA 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 1134
PfeI GAWTC 6 cut(s) 125, 756, 914, 971, 1600, 1697
PkrI GCNGC 6 cut(s) 115, 652, 781, 910, 1453, 1456
PleI GAGTC 4 cut(s) 359, 1210, 1242, 1440
PpsI GAGTC 4 cut(s) 359, 1210, 1242, 1440
PpuMI RGGWCCY 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 1859
Psp5II RGGWCCY 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 1326
PspEI GGTNACC 1 cut(s) 1902
PspGI CCWGG 1 cut(s) 1326
PspN4I GGNNCC 1 cut(s) 1525
PspPI GGNCC 4 cut(s) 374, 525, 1142, 1523
PspPPI RGGWCCY 1 cut(s) 525
PstI CTGCAG 1 cut(s) 1456
RsaI GTAC 5 cut(s) 97, 209, 714, 1581, 1960
RsaNI GTAC 5 cut(s) 96, 208, 713, 1580, 1959
RseI CAYNNNNRTG 2 cut(s) 1405, 1792
SacI GAGCTC 1 cut(s) 1859
SaqAI TTAA 5 cut(s) 470, 774, 1017, 1533, 1869
SatI GCNGC 6 cut(s) 114, 651, 780, 909, 1452, 1455
Sau3AI GATC 5 cut(s) 22, 234, 304, 441, 1888
Sau96I GGNCC 4 cut(s) 374, 525, 1142, 1523
SchI GAGTC 4 cut(s) 360, 1210, 1243, 1441
ScrFI CCNGG 3 cut(s) 289, 372, 1328
SduI GDGCHC 3 cut(s) 366, 1209, 1859
SfaNI GCATC 3 cut(s) 637, 889, 1926
SfcI CTRYAG 2 cut(s) 1452, 1912
SinI GGWCC 2 cut(s) 525, 1523
SmiMI CAYNNNNRTG 2 cut(s) 1405, 1792
SmlI CTYRAG 2 cut(s) 132, 1265
SmoI CTYRAG 2 cut(s) 132, 1265
SsiI CCGC 2 cut(s) 851, 1900
SspI AATATT 2 cut(s) 466, 1381
SspMI CTAG 5 cut(s) 348, 380, 413, 620, 1701
SstI GAGCTC 1 cut(s) 1859
StyD4I CCNGG 3 cut(s) 287, 370, 1326
StyI CCWWGG 4 cut(s) 399, 666, 886, 1686
TaaI ACNGT 4 cut(s) 942, 1255, 1844, 1958
TaqI TCGA 4 cut(s) 237, 274, 1598, 1937
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 6 cut(s) 125, 756, 914, 971, 1600, 1697
Tru1I TTAA 5 cut(s) 470, 774, 1017, 1533, 1869
Tru9I TTAA 5 cut(s) 470, 774, 1017, 1533, 1869
TscAI CASTG 5 cut(s) 519, 909, 945, 1171, 1251
TseFI GTSAC 4 cut(s) 490, 936, 1750, 1902
TseI GCWGC 6 cut(s) 113, 650, 779, 908, 1451, 1454
Tsp45I GTSAC 4 cut(s) 490, 936, 1750, 1902
TspDTI ATGAA 9 cut(s) 346, 437, 441, 808, 1013, 1078, 1143, 1493, 1643
TspGWI ACGGA 2 cut(s) 231, 314
TspRI CASTG 5 cut(s) 519, 909, 945, 1171, 1251
VneI GTGCAC 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 525, 1523
XapI RAATTY 2 cut(s) 1879, 1939
XceI RCATGY 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 1134
XspI CTAG 5 cut(s) 348, 380, 413, 620, 1701
Zsp2I ATGCAT 2 cut(s) 661, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.