MD15G1045900.v1.1

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000051
Physical Location & Seq
Forward (+)
3145821 .. 3149206
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1045900.v1.1.491

Sequence Viewer

Length: 2871 bp
ATGGAGTTGAAGAAATCAATCAACCTTTTTTGTTCTTTCTTCTTCCTTGTTTCTTTCAGCATTCATGTTTCCTTTGTCATTGGACAGAAGACGCAGAATAGAACAATCCCAGTGAATGTTGGTGTAATTCTTGATGACCCTGATTCGGTGAGGGGAAAGGTTCGGTTGAGCTGCATTGAAATGGCCCTCTCGGATTTTTATTCCTCTCACAGTTCCTCTAGAACTAGACTGGTCTTGAGCATTAGGGACTCTAGAAAAGACGTTGTCGATGCAGCTGCTGCAGCTTTGGACCTGATAAAGAATCTTCAAGTGCAAGCAATCATTGGTCCTACATCATCAATGCAAGCAGACTTTGCAATTGATCTCGGAGACAAAGCCAAAGTTCCCATAATCTCATTTTTGGCAACAAATCCTTCCCTCACTTCCATTCAGGGTTCATACTTTTTCCGAGCAGCGCAAAATGATGCCTCTCAAGTGAAAGCCATAACTGCTATCATCCAAGCCTTTGGATGGAGAGAAGTGGTGCCCATCTACGTAGACAATGAGTTTGGTGAGGGAATATTACCGTCCTTGGTTGATGCCTTAGATGAAGTTCAAGCTCGTGTGCCCTACCGGAGTGCCATACCTCCAATGGCCACTGATGACCAACTTGCCGCAGAGCTTTACAAGTTAATGACAAAGCAAACCAGGGTCTTCATCGTGCACATGTCGCCCTCTCTTGGTTCTCTTCTTTTCACCAAGGCACAAGAGATCGGTATGATGAATGAAAGCTATGTTTGGATCATGACCAATGGCCTAACAAATCATGTAAGTTCACTAAATTCTTCAATCATCAAGTCAATGCAAGGTGTGTTGGGTGTGAGAACTTATGTACCGAAAACAGAAGAGCTTATCCATTTTAGAGTTCGATGGAAGAGGCAATTCCAACAGAAAAATCCATCCGTGGTTGATGTCGAATTGGATGTTTTTTCAATTTGGGCATATGATGCTGCTGTTGCATTAGCCATGGCAGTTGAAAGTGTTGGGACTAGAAACTTTGGCTTTGTAAAGACGAATGCTTCCATCAACTCATCCTCAACAGATCTTATAACTTTCGGGGTCTCTCGAAATGGTCCAAAACTTTTTGAATCCTTATCAAGTACTCACTTTAAAGGCCTTGCAGGAGATTTCAGTTTTGTCAATGGGGAATTACAGTCTTCAGTGTTTGAAATAGTCAATGTGAATGGTGATGGAGCAAGAGAAATTGGTTTTTGGACACCAGAAAGTGGACTCATGAAAAAATTCATAAACCCCACAAACACAAAGAGTGTTGCAAATTCAACTTCTAGATCCAACATGGGATCCATCATATGGCCTGGAGATTCTACCTCTGTTCCAAAAGGATGGGAGATCCCCACGAACGACAGAAAATTGAGAGTGGGAGTTCCGGTGAAGATTGGTTCTCCGGAGTTTGTTAAGGTGGTACGTGATCCTAGTACTAACACAACAGATGTTTCTGGTTACTGCATTGACGTCTTTAATGCTGTCATGGAAAAATTACCATATGCTGTTATTTATGACTTCATTCCCTTTGCAAAACCCGATGGTACAACCGCTGGCACTTACAATGATTTAGTCGACCAAGTTTATCTCGGGAACTATGAAGCTTTGGCTGCAGCCACGACAATTAGAGCAAATAGGTCTTTGTATGTAGATTTCACATTGCCATATACCGAATCAGGTGTAGTAATGGTGGTGCGAACGAAAGATTACAAAAGCCAAAATGAATGGCTTTTCTTGAAGCCTTTGACATGGGATCTCTGGCTTACAAGTTCTTGCTTTTTTGTTTTCATTGGTTCGGTGATATGGGTTCTCGAACACCGCATTAACGAAGATTTTCGTGGCCCTCCCTCACATCAAGTCGGCACAAGCTTGTGGTTCTCCTTCTCAACCATGGTTTTTGCACATCGGGAGATAGTGGTTAGTAACTTGGCTAGGTTTGTGGTGATAGTATGGCTATTTGTAGTGCTAATCCTTACTCAAAGTTACACGGCTAGCCTGACTTCAATGTTAACCATCCAACAACTCCAGCCAACCTTTTCTGATCTAAACGAGCTTATAAACAAGAAGGAGAGTGTGGGATATCCGAAGGGCTCATTTGTCTGCGAACTTTTGCTAGATAGAGGTTTTGATAAACAGAAGATTAAAGCCTATACATCTCCAGAAGAATGTGACGAACTTTTGACGAAAGGGACTGCAAAAGGTGGCATCGCTGCCGCTATTGATGAAACCCCAAACTTGAGGCTTTTTCTTGCAAAATATTGCTCCAAATACACCATCGTTGGGCCAATATTTAAGACATCAGGCTTTGCCTTTGTTTTCCCCAAAGGTTCGAATCTTGTACCTGATGTTTCAAAGGCGATTCTGAACCTGACAGAGGGAGACGAGATGAAAGAAATAGAGATCAAATGGTTCGGGAAACAAGCCACTTGTATAGACTCTCAGTTCTCCAATAAATCCAACAGGCTTGGCCTTAATAGCTTTTGGGGCCTCTTACTCATCGCTGGGCTGGCGTCATCCTTAGCTCTTGTCGTATCTGCAGTCTCCTTCCTGTATGTGCACAGGCAAACCCTAATGACAAGAGATACCTCTGCATGGGAAAGAATTCGGGTCATATTTAGAAGCTTTGTCCAAAAAGATCTCACTTCCCATACTTTTCGAAACCAGAATGTGGGGAATGCGGAGTCCTCAGCAGCCTTCAGCACCGGCCAGCCGAGCCCGTTTAGCCTCTCAAATCACACGGGTCCAGTCTCACCTTCCTTCAGTGAATTAGGTACTCCTGTTGCTGTTGGTCAAGAATCTCCAGCATGTTTAATGCCACCAGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

957

Amino Acids

105.55

Weight (kDa)

7.17

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 39 - 344 5e-18 Periplasmic binding protein
ANF_receptor PF01094 56 - 410 4.7e-84 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 489 - 581 2.3e-07 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 496 - 820 2.3e-10 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 597 - 851 1.2e-36 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1088, 2099
AatII GACGTC 1 cut(s) 1515
AccB1I GGYRCC 1 cut(s) 523
AccB7I CCANNNNNTGG 3 cut(s) 1265, 1350, 2710
AccI GTMKAC 2 cut(s) 537, 1617
AccIII TCCGGA 1 cut(s) 1444
AciI CCGC 5 cut(s) 654, 1593, 1861, 2256, 2720
AclWI GGATC 7 cut(s) 788, 1323, 1335, 1348, 1384, 1463, 1803
AcoI YGGCCR 2 cut(s) 633, 2746
AcsI RAATTY 4 cut(s) 820, 1280, 1315, 2643
AcuI CTGAAG 3 cut(s) 1182, 2722, 2785
AcyI GRCGYC 2 cut(s) 1512, 2552
AfaI GTAC 7 cut(s) 873, 1141, 1464, 1477, 1588, 2382, 2815
AfiI CCNNNNNNNGG 9 cut(s) 145, 510, 719, 1265, 1350, 2322, 2416, 2634, 2710
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 2 cut(s) 686, 1354
Alw21I GWGCWC 2 cut(s) 705, 2601
Alw26I GTCTC 5 cut(s) 363, 1105, 2415, 2587, 2794
Alw44I GTGCAC 2 cut(s) 701, 2597
AlwI GGATC 7 cut(s) 788, 1323, 1335, 1348, 1384, 1463, 1803
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 1631
Aor13HI TCCGGA 1 cut(s) 1444
ApaLI GTGCAC 2 cut(s) 701, 2597
ApoI RAATTY 4 cut(s) 820, 1280, 1315, 2643
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
Asp700I GAANNNNTTC 3 cut(s) 1280, 1875, 2643
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 8 cut(s) 184, 289, 326, 1112, 1883, 2324, 2527, 2783
AsuHPI GGTGA 8 cut(s) 160, 563, 727, 1238, 1441, 1852, 1996, 2784
AsuII TTCGAA 2 cut(s) 2372, 2698
AsuNHI GCTAGC 1 cut(s) 2033
AvaI CYCGRG 1 cut(s) 1631
AvaII GGWCC 4 cut(s) 289, 326, 1112, 2783
BaeGI GKGCMC 4 cut(s) 528, 609, 705, 2601
BaeI ACNNNNGTAYC 4 cut(s) 855, 888, 2805, 2838
BalI TGGCCA 1 cut(s) 635
BamHI GGATCC 1 cut(s) 1340
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 2 cut(s) 2135, 2759
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 3 cut(s) 95, 685, 1188
Bbv12I GWGCWC 2 cut(s) 705, 2601
BbvCI CCTCAGC 1 cut(s) 2728
BceAI ACGGC 1 cut(s) 2046
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 2 cut(s) 688, 1356
BcoDI GTCTC 5 cut(s) 363, 1105, 2415, 2587, 2794
BfaI CTAG 9 cut(s) 219, 225, 252, 1029, 1326, 1473, 1974, 2034, 2156
BfmI CTRYAG 3 cut(s) 279, 1653, 2577
BglII AGATCT 2 cut(s) 1081, 2677
BmcAI AGTACT 2 cut(s) 1141, 1477
Bme1390I CCNGG 2 cut(s) 688, 1356
Bme18I GGWCC 4 cut(s) 289, 326, 1112, 2783
BmeT110I CYCGRG 1 cut(s) 1631
BmgT120I GGNCC 8 cut(s) 184, 289, 326, 1112, 1883, 2324, 2527, 2783
BmiI GGNNCC 4 cut(s) 525, 1342, 2528, 2784
BmrFI CCNGG 2 cut(s) 688, 1356
BmrI ACTGGG 1 cut(s) 104
BmsI GCATC 5 cut(s) 259, 454, 568, 976, 2256
BmtI GCTAGC 1 cut(s) 2037
BmuI ACTGGG 1 cut(s) 104
BpiI GAAGAC 3 cut(s) 95, 685, 1188
BpmI CTGGAG 4 cut(s) 1377, 2051, 2184, 2826
Bpu10I CCTNAGC 2 cut(s) 2560, 2728
Bpu14I TTCGAA 2 cut(s) 2372, 2698
BpuEI CTTGAG 3 cut(s) 256, 456, 2299
BsaAI YACGTR 2 cut(s) 535, 1466
BsaHI GRCGYC 2 cut(s) 1512, 2552
BsaI GGTCTC 1 cut(s) 1105
BsaJI CCNNGG 6 cut(s) 570, 687, 738, 942, 1005, 1932
BsaWI WCCGGW 3 cut(s) 612, 1426, 1444
BsaXI ACNNNNNCTCC 2 cut(s) 1413, 1443
Bsc4I CCNNNNNNNGG 9 cut(s) 145, 510, 719, 1265, 1350, 2322, 2416, 2634, 2710
Bse118I RCCGGY 1 cut(s) 2744
Bse1I ACTGG 3 cut(s) 110, 234, 2786
Bse3DI GCAATG 1 cut(s) 1700
BseAI TCCGGA 1 cut(s) 1444
BseBI CCWGG 2 cut(s) 688, 1356
BseDI CCNNGG 6 cut(s) 570, 687, 738, 942, 1005, 1932
BseGI GGATG 8 cut(s) 495, 515, 938, 967, 1070, 1388, 2055, 2555
BseLI CCNNNNNNNGG 9 cut(s) 145, 510, 719, 1265, 1350, 2322, 2416, 2634, 2710
BseMI GCAATG 1 cut(s) 1700
BseMII CTCAG 2 cut(s) 2495, 2742
BseNI ACTGG 3 cut(s) 110, 234, 2786
BseSI GKGCMC 4 cut(s) 528, 609, 705, 2601
BseYI CCCAGC 1 cut(s) 2543
BshNI GGYRCC 1 cut(s) 523
BsiHKAI GWGCWC 2 cut(s) 705, 2601
BsiHKCI CYCGRG 1 cut(s) 1631
BsiSI CCGG 4 cut(s) 613, 1427, 1445, 2745
BslFI GGGAC 3 cut(s) 260, 1039, 2245
BslI CCNNNNNNNGG 9 cut(s) 145, 510, 719, 1265, 1350, 2322, 2416, 2634, 2710
BsmAI GTCTC 5 cut(s) 363, 1105, 2415, 2587, 2794
BsmBI CGTCTC 1 cut(s) 2415
BsmFI GGGAC 3 cut(s) 260, 1039, 2245
BsmI GAATGC 3 cut(s) 60, 1060, 2722
Bso31I GGTCTC 1 cut(s) 1105
BsoBI CYCGRG 1 cut(s) 1631
Bsp119I TTCGAA 2 cut(s) 2372, 2698
Bsp1286I GDGCHC 6 cut(s) 528, 609, 705, 2135, 2601, 2759
Bsp13I TCCGGA 1 cut(s) 1444
Bsp19I CCATGG 2 cut(s) 1005, 1932
BspACI CCGC 5 cut(s) 654, 1593, 1861, 2256, 2720
BspCNI CTCAG 2 cut(s) 2494, 2741
BspEI TCCGGA 1 cut(s) 1444
BspHI TCATGA 2 cut(s) 783, 1272
BspLI GGNNCC 4 cut(s) 525, 1342, 2528, 2784
BspMAI CTGCAG 3 cut(s) 283, 1657, 2581
BspOI GCTAGC 1 cut(s) 2037
BspPI GGATC 7 cut(s) 788, 1323, 1335, 1348, 1384, 1463, 1803
BspQI GCTCTTC 1 cut(s) 879
BspT104I TTCGAA 2 cut(s) 2372, 2698
BspT107I GGYRCC 1 cut(s) 523
BspTNI GGTCTC 1 cut(s) 1105
BsrDI GCAATG 1 cut(s) 1700
BsrFI RCCGGY 1 cut(s) 2744
BsrI ACTGG 3 cut(s) 110, 234, 2786
BssAI RCCGGY 1 cut(s) 2744
BssECI CCNNGG 6 cut(s) 570, 687, 738, 942, 1005, 1932
BssNI GRCGYC 2 cut(s) 1512, 2552
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 4 cut(s) 570, 738, 1005, 1932
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 688, 1356
Bst4CI ACNGT 3 cut(s) 212, 567, 1194
Bst6I CTCTTC 3 cut(s) 732, 879, 908
BstACI GRCGYC 2 cut(s) 1512, 2552
BstAPI GCANNNNNTGC 3 cut(s) 278, 353, 986
BstBAI YACGTR 2 cut(s) 535, 1466
BstBI TTCGAA 2 cut(s) 2372, 2698
BstC8I GCNNGC 6 cut(s) 315, 345, 1597, 2035, 2550, 2750
BstDEI CTNAG 4 cut(s) 583, 2481, 2560, 2728
BstDSI CCRYGG 3 cut(s) 942, 1005, 1932
BstENI CCTNNNNNAGG 1 cut(s) 2414
BstF5I GGATG 8 cut(s) 495, 515, 938, 967, 1070, 1388, 2055, 2555
BstHHI GCGC 1 cut(s) 457
BstMAI GTCTC 5 cut(s) 363, 1105, 2415, 2587, 2794
BstNI CCWGG 2 cut(s) 688, 1356
BstNSI RCATGY 3 cut(s) 709, 2850, 2868
BstSCI CCNGG 2 cut(s) 686, 1354
BstSFI CTRYAG 3 cut(s) 279, 1653, 2577
BstSLI GKGCMC 4 cut(s) 528, 609, 705, 2601
BstSNI TACGTA 1 cut(s) 535
BstV2I GAAGAC 3 cut(s) 95, 685, 1188
BstX2I RGATCY 6 cut(s) 1081, 1328, 1340, 1389, 1795, 2677
BstXI CCANNNNNNTGG 2 cut(s) 506, 1383
BstYI RGATCY 6 cut(s) 1081, 1328, 1340, 1389, 1795, 2677
BtgI CCRYGG 3 cut(s) 942, 1005, 1932
BtgZI GCGATG 2 cut(s) 2233, 2524
BtsCI GGATG 8 cut(s) 495, 515, 938, 967, 1070, 1388, 2055, 2555
BtsIMutI CAGTG 4 cut(s) 117, 636, 1206, 2809
Cac8I GCNNGC 6 cut(s) 315, 345, 1597, 2035, 2550, 2750
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 2 cut(s) 783, 1272
CfoI GCGC 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 2744
Cfr13I GGNCC 8 cut(s) 184, 289, 326, 1112, 1883, 2324, 2527, 2783
CseI GACGC 2 cut(s) 100, 2541
Csp6I GTAC 7 cut(s) 872, 1140, 1463, 1476, 1587, 2381, 2814
CviQI GTAC 7 cut(s) 872, 1140, 1463, 1476, 1587, 2381, 2814
DdeI CTNAG 4 cut(s) 583, 2481, 2560, 2728
DraI TTTAAA 1 cut(s) 1150
EaeI YGGCCR 2 cut(s) 633, 2746
Eam1104I CTCTTC 3 cut(s) 732, 879, 908
EarI CTCTTC 3 cut(s) 732, 879, 908
Eco105I TACGTA 1 cut(s) 535
Eco130I CCWWGG 4 cut(s) 570, 738, 1005, 1932
Eco147I AGGCCT 1 cut(s) 1155
Eco24I GRGCYC 2 cut(s) 2135, 2759
Eco31I GGTCTC 1 cut(s) 1105
Eco32I GATATC 1 cut(s) 2123
Eco47I GGWCC 4 cut(s) 289, 326, 1112, 2783
Eco57I CTGAAG 3 cut(s) 1182, 2722, 2785
Eco88I CYCGRG 1 cut(s) 1631
EcoNI CCTNNNNNAGG 1 cut(s) 2414
EcoO109I RGGNCCY 1 cut(s) 2527
EcoRI GAATTC 1 cut(s) 2643
EcoRII CCWGG 2 cut(s) 686, 1354
EcoRV GATATC 1 cut(s) 2123
EcoT14I CCWWGG 4 cut(s) 570, 738, 1005, 1932
EcoT38I GRGCYC 2 cut(s) 2135, 2759
ErhI CCWWGG 4 cut(s) 570, 738, 1005, 1932
Esp3I CGTCTC 1 cut(s) 2415
FaqI GGGAC 3 cut(s) 260, 1039, 2245
FauNDI CATATG 3 cut(s) 982, 1349, 1543
FblI GTMKAC 2 cut(s) 537, 1617
FokI GGATG 8 cut(s) 482, 522, 925, 974, 1057, 1395, 2042, 2542
FriOI GRGCYC 2 cut(s) 2135, 2759
FspBI CTAG 9 cut(s) 219, 225, 252, 1029, 1326, 1473, 1974, 2034, 2156
GlaI GCGC 1 cut(s) 456
GsaI CCCAGC 1 cut(s) 2547
GsuI CTGGAG 4 cut(s) 1377, 2051, 2184, 2826
HapII CCGG 4 cut(s) 613, 1427, 1445, 2745
HgaI GACGC 2 cut(s) 100, 2541
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 2 cut(s) 1512, 2552
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 2 cut(s) 1618, 2052
HindII GTYRAC 2 cut(s) 1618, 2052
HindIII AAGCTT 3 cut(s) 1644, 1909, 2662
HpaI GTTAAC 1 cut(s) 2052
HpaII CCGG 4 cut(s) 613, 1427, 1445, 2745
HphI GGTGA 8 cut(s) 160, 563, 727, 1238, 1441, 1852, 1996, 2784
Hpy166II GTNNAC 7 cut(s) 538, 703, 815, 1268, 1618, 2052, 2599
Hpy188I TCNGA 6 cut(s) 193, 368, 449, 2083, 2127, 2406
Hpy8I GTNNAC 7 cut(s) 538, 703, 815, 1268, 1618, 2052, 2599
HpyAV CCTTC 8 cut(s) 423, 1933, 2101, 2122, 2596, 2746, 2805, 2809
HpyCH4III ACNGT 3 cut(s) 212, 567, 1194
HpyCH4IV ACGT 4 cut(s) 261, 534, 1465, 1512
HpyF3I CTNAG 4 cut(s) 583, 2481, 2560, 2728
HpySE526I ACGT 4 cut(s) 261, 534, 1465, 1512
Hsp92I GRCGYC 2 cut(s) 1512, 2552
HspAI GCGC 1 cut(s) 455
Kpn2I TCCGGA 1 cut(s) 1444
KspAI GTTAAC 1 cut(s) 2052
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 2 cut(s) 1232, 2309
LweI GCATC 5 cut(s) 259, 454, 568, 976, 2256
MaeI CTAG 9 cut(s) 219, 225, 252, 1029, 1326, 1473, 1974, 2034, 2156
MaeII ACGT 4 cut(s) 261, 534, 1465, 1512
MaeIII GTNAC 4 cut(s) 1499, 1964, 2024, 2210
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 6 cut(s) 1081, 1328, 1340, 1389, 1795, 2677
MhlI GDGCHC 6 cut(s) 528, 609, 705, 2135, 2601, 2759
MlsI TGGCCA 1 cut(s) 635
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 4 cut(s) 242, 1263, 2471, 2732
MmeI TCCRAC 4 cut(s) 949, 1356, 2083, 2523
Mox20I TGGCCA 1 cut(s) 635
MroI TCCGGA 1 cut(s) 1444
MroXI GAANNNNTTC 3 cut(s) 1280, 1875, 2643
MscI TGGCCA 1 cut(s) 635
MslI CAYNNNNRTG 2 cut(s) 179, 2863
Msp20I TGGCCA 1 cut(s) 635
MspA1I CMGCKG 2 cut(s) 275, 1595
MspI CCGG 4 cut(s) 613, 1427, 1445, 2745
MspR9I CCNGG 2 cut(s) 688, 1356
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 3 cut(s) 60, 1060, 2722
MvaI CCWGG 2 cut(s) 688, 1356
NcoI CCATGG 2 cut(s) 1005, 1932
NdeI CATATG 3 cut(s) 982, 1349, 1543
NheI GCTAGC 1 cut(s) 2033
NlaIV GGNNCC 4 cut(s) 525, 1342, 2528, 2784
NmeAIII GCCGAG 1 cut(s) 2778
NmuCI GTSAC 1 cut(s) 2210
NspI RCATGY 3 cut(s) 709, 2850, 2868
NspV TTCGAA 2 cut(s) 2372, 2698
PagI TCATGA 2 cut(s) 783, 1272
PceI AGGCCT 1 cut(s) 1155
PciI ACATGT 1 cut(s) 705
PciSI GCTCTTC 1 cut(s) 879
PctI GAATGC 3 cut(s) 60, 1060, 2722
PdmI GAANNNNTTC 3 cut(s) 1280, 1875, 2643
PfeI GAWTC 8 cut(s) 143, 301, 1127, 1361, 1715, 2374, 2401, 2837
PflFI GACNNNGTC 1 cut(s) 263
PflMI CCANNNNNTGG 3 cut(s) 1265, 1350, 2710
PleI GAGTC 4 cut(s) 242, 1263, 2471, 2731
PpsI GAGTC 4 cut(s) 242, 1263, 2471, 2731
Ppu21I YACGTR 2 cut(s) 535, 1466
PscI ACATGT 1 cut(s) 705
PsiI TTATAA 2 cut(s) 1088, 2099
Psp6I CCWGG 2 cut(s) 686, 1354
PspFI CCCAGC 1 cut(s) 2543
PspGI CCWGG 2 cut(s) 686, 1354
PspN4I GGNNCC 4 cut(s) 525, 1342, 2528, 2784
PspPI GGNCC 8 cut(s) 184, 289, 326, 1112, 1883, 2324, 2527, 2783
PstI CTGCAG 3 cut(s) 283, 1657, 2581
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 6 cut(s) 1081, 1328, 1340, 1389, 1795, 2677
PsyI GACNNNGTC 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 7 cut(s) 873, 1141, 1464, 1477, 1588, 2382, 2815
RsaNI GTAC 7 cut(s) 872, 1140, 1463, 1476, 1587, 2381, 2814
RseI CAYNNNNRTG 2 cut(s) 179, 2863
SalI GTCGAC 1 cut(s) 1616
SapI GCTCTTC 1 cut(s) 879
Sau96I GGNCC 8 cut(s) 184, 289, 326, 1112, 1883, 2324, 2527, 2783
ScaI AGTACT 2 cut(s) 1141, 1477
SchI GAGTC 4 cut(s) 242, 1263, 2471, 2732
ScrFI CCNGG 2 cut(s) 688, 1356
SduI GDGCHC 6 cut(s) 528, 609, 705, 2135, 2601, 2759
SfaNI GCATC 5 cut(s) 259, 454, 568, 976, 2256
SfcI CTRYAG 3 cut(s) 279, 1653, 2577
SfuI TTCGAA 2 cut(s) 2372, 2698
SinI GGWCC 4 cut(s) 289, 326, 1112, 2783
SmiMI CAYNNNNRTG 2 cut(s) 179, 2863
SmlI CTYRAG 3 cut(s) 235, 471, 2278
SmoI CTYRAG 3 cut(s) 235, 471, 2278
SnaBI TACGTA 1 cut(s) 535
SseBI AGGCCT 1 cut(s) 1155
SsiI CCGC 5 cut(s) 654, 1593, 1861, 2256, 2720
SspI AATATT 3 cut(s) 561, 2300, 2331
SspMI CTAG 9 cut(s) 219, 225, 252, 1029, 1326, 1473, 1974, 2034, 2156
StuI AGGCCT 1 cut(s) 1155
StyD4I CCNGG 2 cut(s) 686, 1354
StyI CCWWGG 4 cut(s) 570, 738, 1005, 1932
TaaI ACNGT 3 cut(s) 212, 567, 1194
TaiI ACGT 4 cut(s) 264, 537, 1468, 1515
TaqI TCGA 8 cut(s) 267, 907, 954, 1105, 1617, 1854, 2372, 2698
TatI WGTACW 2 cut(s) 1139, 1475
TauI GCSGC 2 cut(s) 656, 2258
TfiI GAWTC 8 cut(s) 143, 301, 1127, 1361, 1715, 2374, 2401, 2837
TscAI CASTG 4 cut(s) 117, 643, 1206, 2809
TseFI GTSAC 1 cut(s) 2210
Tsp45I GTSAC 1 cut(s) 2210
TspGWI ACGGA 1 cut(s) 931
TspRI CASTG 4 cut(s) 117, 643, 1206, 2809
Tth111I GACNNNGTC 1 cut(s) 263
Van91I CCANNNNNTGG 3 cut(s) 1265, 1350, 2710
VneI GTGCAC 2 cut(s) 701, 2597
VpaK11BI GGWCC 4 cut(s) 289, 326, 1112, 2783
XagI CCTNNNNNAGG 1 cut(s) 2414
XapI RAATTY 4 cut(s) 820, 1280, 1315, 2643
XbaI TCTAGA 3 cut(s) 218, 251, 1325
XceI RCATGY 3 cut(s) 709, 2850, 2868
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XmiI GTMKAC 2 cut(s) 537, 1617
XmnI GAANNNNTTC 3 cut(s) 1280, 1875, 2643
XspI CTAG 9 cut(s) 219, 225, 252, 1029, 1326, 1473, 1974, 2034, 2156
ZraI GACGTC 1 cut(s) 1513
ZrmI AGTACT 2 cut(s) 1141, 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.