Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

3159304 .. 3163882

Gene Structure 4579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1046000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2925 bp

ATGTGCCTTGCAAATAAAGAAAGCATTCAAATTAACATGACCATGATCAAGAAGAACCCTAGCAGTATCCTCGTTCTTTTTATCTCTTTCTGCTTTCTCTTCCCCCTGTCATGGAGTTTCAATATGGCGGCCATGGCAGCTGCGGAAAACACAACGATCCCAGTGAATGTGGGTGTTGTTGTTGACCTCAATCAAACCAGTCAGAGAGGGAAGATGTATTTAAGTTGCATCCAAATGGCCCTCGAGGACTTCTATGCCTCTCATGCTCACTTCAAAACTAGGCTCGTTTTGAACACTAGGAACTCCAAAAAAACTGTTGTTGGTGCAGCTTCTGCAGATCTGATAAACAATGTAGAAGTGCAAGCAATCCTTGGCCCAGTGACATCAATGCAGGCAAGCTTCGTTGTTAATCTTGGAGACCGAGCTAATGTGCCCATTGTATCATTTTCTGCAACAAGCCCTTCTCTTACTTCACTCCAAAGCTCTTACTTCTTCCGAATTGCACAAACCGACTCGCACCAAGTGCAAGCCATAAGTGCCATTGTTAAAAATTTCGCATGGAGAAAAGTTGTGCCAATTTACGTAGACAATACGTACGGAGAAGGAATCATACCCCTTTTAACCGGTGCATTACATGAGGTTGGTGCTCATGTCCCTCATCGGTGTGTCATTCCCCCATCAGCCACTGATGAACAAATTGGCAACGAGCTTTACAAGTTAATGACAATGCAAACTAGAGTCTTCATCGTGCACATGTTGCCCAAACTTTGCTCTAAGCTATTTGCCAAGGCAAAAGAAATTGGAATGATGAGTGAAGGCTATGTTTGGATCGTGACCAACGGAGTAGCAAATCGTTTATGGTCTATGAATCCCGTCATCTTAAATTCAATGCAAGGAGTCTTAGGAGTTGAAACTTATGTTCGGAGAACAAAGGAGCTCCAAGAGTTTAAAATGCGGTGGAAAAAGCAATTCCAACAAGACAATCCAGCCATCATGGAAGTTGATGTAGATGTGTTTGGACTTTGGGCTTATGATGCCACTTTTGCTCTAGCCTTGGCAGTTGAAGAAGTTGGAATTAATGCAAGCTTGGGATTCCGAAAGGGGAATTCATCCTTCAATTCGACAGATCTTAATACTTTCAAGGTTTCTCAAGATGGATCACAACTTGCCCAAGCCTTATCTAGTACTTCATTCAAAGGCATAGCTGGTGACTTCAGTCTTAAAGATGGGCAACTTCAATCATCAACCTTTAAGATAGTTAATTTAAATCGTTATGAGGTAAGAACAATAGCATATTGGACACCGGAAAGTGGAATGGTGGAAACATTGAATTCAACAAACACTAGTACACCTTCAATTTCGAGGATGTTTAATTTTGAAGATAAGATTAAATGGCCAGGAGATTCTCTCATTGTTCCAAGGGGATGGGAGATCCCAACAAAAGGCAAGAAGTTGAGGATTGGAGTACCTGTGAAGTCTGCTTTTACTGAGTTTGTTACGGTAACCAAGGATTCTAGCACCAATAAAACAGATGTCACTGGGTTTAGTATCGATGTCTTTAAGGCTGCAGTGGAACTGTTACCTTACGACCTTCATTTCGAGCTCATTCCCTTTGCAAAGCCGGATGGCACCAGTGCTGGCACTTACAACGATTTGGTCTATCATGTATATCTTCAGAAATTTGATGCTGTGGTGGGAGATATAACAATTAGAGCAAATAGATCTTTATATGCGGACTTTACAATGCCATATACAGAATCCGGTGTAGTCATGGTTGTGCCAATCACCGACACCAGGAGCAAAAGTCCATGGGTTTTTTTAAAGCCTCTGACATGGGACCTATGGCTTACAACTTTTTGTTTCTTCATCTTCATTGGCTTTGTAATTTGGGTGCTTGAACATCGAATTAACGAAGATTTTCGGGGTTCTCCCTCACACCAAGTTGGCACAAGCTTTTTCTTCTCTTTCTCAACCTTGGTCTTTTCAAATAGGGAGAGAGTGGTTAGCAACTTGGGTAGATTCTTGATGGTTATATGGGTATTTGTTGTGCTAGTTTTGACACAAAGCTACACAGCTAATCTAGCATCACTACTAACGGTTGAGCAGCTGCGGCCAACTGTCACGGATATAAAGGATCTTCTAAAGAATGGGGACAATGTCGGCTACATGAAGAATTCTTTCGTCTATGAACTTTTGAAACAAGTCGGTTTTGGTGAGTCCAAGCTTAAGGCTATGAAATCCATGGAAGATTGCGCTGAAGCTCTTTCCAAAGGGAGCAAAAGTGGTGGCATTACTGCTTTTGTTAATGAAACCCCCAACATGAAGCTTTTTCTTGCACAACATTGTTCCAAATGTACCATGATTGGTCCTATCTTCAGAACAGATGGTTTTGCCTTTGTGTTTCCAAGGCATTCTCCTCTTGTGCCTGATATTTCACGGGCGATCCTAAACGTGACAGAAGGAGAAAGGATGAAGAAAATTGAAAGCAAATGGTTCACTCAAGAAATGGATCGTGAAGCTAAGTCCGGTACACCAAGTTTTTCAAGCGGCAGTCTTGGCCTTGAAAGCTTTTGGGGCCTATTCCTCATTGTCGGTTTGACGTCAATTCTCGCGCTAGTCATCTTTGCAGCTTCATTCCTTTACAATCATAGGCATATATTGGAGCACCCTAATTCAAGAGCTTCAAGATGGAGAAGGATTCGAGCCATGATTAGAATTTTCAACGAAAAAGACCTCAACTCCCACAAAGGCAGTCAACAAGGAGATGGAATTGCTTGTGGGGGAGATGAAGTTAAGGCATCACCTAATAGCAACTGGCTGGAAGATAAGGATTTGGGATTGTATGAAGGGCAACAAACTCCATCGACTACTGGCTATTCGTCTCCGGAGATAGTTCAAATAATTCAGCTTGCTATCCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

975

Amino Acids

108.65

Weight (kDa)

8.69

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	54 - 414	1.2e-17	Periplasmic binding protein
ANF_receptor	PF01094	76 - 423	5.5e-80	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	498 - 593	6.3e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	508 - 833	1.7e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	611 - 866	2.6e-36	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2603
AbsI	CCTCGAGG	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	1628
AccI	GTMKAC	1 cut(s)	585
AccII	CGCG	1 cut(s)	2612
AccIII	TCCGGA	1 cut(s)	2884
AciI	CCGC	6 cut(s)	128, 143, 955, 1733, 2110, 2547
AclWI	GGATC	7 cut(s)	151, 836, 1165, 1426, 2142, 2437, 2517
AcoI	YGGCCR	3 cut(s)	129, 1394, 2111
AcsI	RAATTY	7 cut(s)	550, 883, 1105, 1330, 1679, 2173, 2715
AcuI	CTGAAG	4 cut(s)	1198, 1658, 2277, 2359
AcyI	GRCGYC	1 cut(s)	2600
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	6 cut(s)	596, 1186, 1348, 1467, 2356, 2530
AfiI	CCNNNNNNNGG	4 cut(s)	111, 1310, 1442, 1794
AflII	CTTAAG	1 cut(s)	2225
AflIII	ACRYGT	1 cut(s)	753
AgeI	ACCGGT	1 cut(s)	623
AhlI	ACTAGT	1 cut(s)	1343
AjnI	CCWGG	2 cut(s)	1396, 1793
Alw21I	GWGCWC	5 cut(s)	649, 753, 939, 1605, 2667
Alw26I	GTCTC	2 cut(s)	411, 2886
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	7 cut(s)	151, 836, 1165, 1426, 2142, 2437, 2517
AlwNI	CAGNNNCTG	2 cut(s)	332, 686
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	2884
AoxI	GGCC	7 cut(s)	129, 237, 373, 1394, 2111, 2557, 2575
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	7 cut(s)	137, 140, 326, 1565, 2104, 2107, 2627
ApoI	RAATTY	7 cut(s)	550, 883, 1105, 1330, 1679, 2173, 2715
ArsI	GACNNNNNNTTYG	2 cut(s)	1580, 1612
AseI	ATTAAT	1 cut(s)	1077
AsiGI	ACCGGT	1 cut(s)	623
Asp700I	GAANNNNTTC	3 cut(s)	24, 1917, 2177
AspLEI	GCGC	2 cut(s)	2255, 2614
AspS9I	GGNCC	5 cut(s)	238, 374, 1837, 2366, 2575
AsuHPI	GGTGA	4 cut(s)	1220, 1777, 2225, 2793
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	1837, 2366
BaeGI	GKGCMC	2 cut(s)	435, 753
BalI	TGGCCA	1 cut(s)	1396
BanI	GGYRCC	1 cut(s)	1628
BanII	GRGCYC	2 cut(s)	939, 1605
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	5 cut(s)	649, 753, 939, 1605, 2667
BbvI	GCAGC	7 cut(s)	127, 149, 338, 1552, 2094, 2116, 2639
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	2 cut(s)	1398, 1795
BciVI	GTATCC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	411, 2886
BcuI	ACTAGT	1 cut(s)	1343
BfmI	CTRYAG	2 cut(s)	333, 1566
BfrI	CTTAAG	1 cut(s)	2225
BfuI	GTATCC	1 cut(s)	77
BglII	AGATCT	3 cut(s)	337, 1126, 1721
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	2 cut(s)	1398, 1795
Bme18I	GGWCC	2 cut(s)	1837, 2366
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	5 cut(s)	238, 374, 1837, 2366, 2575
BmiI	GGNNCC	3 cut(s)	1630, 1838, 2576
BmrFI	CCNGG	2 cut(s)	1398, 1795
BmrI	ACTGGG	3 cut(s)	155, 371, 1548
BmsI	GCATC	5 cut(s)	237, 1024, 1675, 2093, 2807
BmuI	ACTGGG	3 cut(s)	155, 371, 1548
BoxI	GACNNNNGTC	1 cut(s)	1215
BpiI	GAAGAC	1 cut(s)	733
BplI	GAGNNNNNCTC	2 cut(s)	1392, 1424
BpuEI	CTTGAG	2 cut(s)	1134, 2484
Bsa29I	ATCGAT	1 cut(s)	1551
BsaAI	YACGTR	2 cut(s)	583, 594
BsaHI	GRCGYC	1 cut(s)	2600
BsaI	GGTCTC	1 cut(s)	411
BsaWI	WCCGGW	5 cut(s)	623, 1303, 1760, 2525, 2884
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 1310, 1442, 1794
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	7 cut(s)	161, 198, 377, 1543, 1632, 2819, 2875
BseAI	TCCGGA	1 cut(s)	2884
BseBI	CCWGG	2 cut(s)	1398, 1795
BseCI	ATCGAT	1 cut(s)	1551
BseGI	GGATG	6 cut(s)	228, 1109, 1371, 1430, 1630, 2475
BseLI	CCNNNNNNNGG	4 cut(s)	111, 1310, 1442, 1794
BseMII	CTCAG	1 cut(s)	1479
BseNI	ACTGG	7 cut(s)	161, 198, 377, 1543, 1632, 2819, 2875
BseRI	GAGGAG	1 cut(s)	2406
BseSI	GKGCMC	2 cut(s)	435, 753
BseXI	GCAGC	7 cut(s)	127, 149, 338, 1552, 2094, 2116, 2639
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	2612
BshFI	GGCC	7 cut(s)	131, 239, 375, 1396, 2113, 2559, 2577
BshNI	GGYRCC	1 cut(s)	1628
BshTI	ACCGGT	1 cut(s)	623
BshVI	ATCGAT	1 cut(s)	1551
BsiHKAI	GWGCWC	5 cut(s)	649, 753, 939, 1605, 2667
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	6 cut(s)	624, 1304, 1622, 1761, 2526, 2885
BsiWI	CGTACG	1 cut(s)	594
BslFI	GGGAC	3 cut(s)	638, 1850, 2165
BslI	CCNNNNNNNGG	4 cut(s)	111, 1310, 1442, 1794
BsmAI	GTCTC	2 cut(s)	411, 2886
BsmBI	CGTCTC	1 cut(s)	2886
BsmFI	GGGAC	3 cut(s)	638, 1850, 2165
BsmI	GAATGC	2 cut(s)	24, 2410
BsnI	GGCC	7 cut(s)	131, 239, 375, 1396, 2113, 2559, 2577
Bso31I	GGTCTC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	6 cut(s)	435, 649, 753, 939, 1605, 2667
Bsp13I	TCCGGA	1 cut(s)	2884
Bsp19I	CCATGG	3 cut(s)	132, 1808, 2241
BspACI	CCGC	6 cut(s)	128, 143, 955, 1733, 2110, 2547
BspANI	GGCC	7 cut(s)	131, 239, 375, 1396, 2113, 2559, 2577
BspCNI	CTCAG	1 cut(s)	1480
BspDI	ATCGAT	1 cut(s)	1551
BspEI	TCCGGA	1 cut(s)	2884
BspFNI	CGCG	1 cut(s)	2612
BspLI	GGNNCC	3 cut(s)	1630, 1838, 2576
BspMAI	CTGCAG	2 cut(s)	337, 1570
BspPI	GGATC	7 cut(s)	151, 836, 1165, 1426, 2142, 2437, 2517
BspT107I	GGYRCC	1 cut(s)	1628
BspTI	CTTAAG	1 cut(s)	2225
BspTNI	GGTCTC	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	7 cut(s)	161, 198, 377, 1543, 1632, 2819, 2875
BssAI	RCCGGY	1 cut(s)	623
BssNI	GRCGYC	1 cut(s)	2600
Bst2UI	CCWGG	2 cut(s)	1398, 1795
Bst4CI	ACNGT	5 cut(s)	316, 1501, 1578, 2098, 2119
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	2600
BstAFI	CTTAAG	1 cut(s)	2225
BstAPI	GCANNNNNTGC	3 cut(s)	332, 523, 757
BstBAI	YACGTR	2 cut(s)	583, 594
BstC8I	GCNNGC	7 cut(s)	363, 393, 397, 528, 1084, 1639, 2910
BstDEI	CTNAG	4 cut(s)	774, 901, 1488, 2520
BstDSI	CCRYGG	3 cut(s)	132, 1808, 2241
BstEII	GGTNACC	1 cut(s)	1501
BstF5I	GGATG	6 cut(s)	228, 1109, 1371, 1430, 1630, 2475
BstFNI	CGCG	1 cut(s)	2612
BstHHI	GCGC	2 cut(s)	2255, 2614
BstMAI	GTCTC	2 cut(s)	411, 2886
BstNI	CCWGG	2 cut(s)	1398, 1795
BstNSI	RCATGY	1 cut(s)	757
BstPAI	GACNNNNGTC	1 cut(s)	1215
BstPI	GGTNACC	1 cut(s)	1501
BstSCI	CCNGG	2 cut(s)	1396, 1793
BstSFI	CTRYAG	2 cut(s)	333, 1566
BstSLI	GKGCMC	2 cut(s)	435, 753
BstSNI	TACGTA	2 cut(s)	583, 594
BstUI	CGCG	1 cut(s)	2612
BstV1I	GCAGC	7 cut(s)	127, 149, 338, 1552, 2094, 2116, 2639
BstV2I	GAAGAC	1 cut(s)	733
BstX2I	RGATCY	5 cut(s)	337, 1126, 1431, 1721, 2134
BstXI	CCANNNNNNTGG	1 cut(s)	1425
BstYI	RGATCY	5 cut(s)	337, 1126, 1431, 1721, 2134
Bsu15I	ATCGAT	1 cut(s)	1551
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	7 cut(s)	131, 239, 375, 1396, 2113, 2559, 2577
BsuTUI	ATCGAT	1 cut(s)	1551
BtgI	CCRYGG	3 cut(s)	132, 1808, 2241
BtsCI	GGATG	6 cut(s)	228, 1109, 1371, 1430, 1630, 2475
BtsI	GCAGTG	1 cut(s)	1575
BtsIMutI	CAGTG	6 cut(s)	168, 384, 684, 1536, 1575, 1639
Cac8I	GCNNGC	7 cut(s)	363, 393, 397, 528, 1084, 1639, 2910
CaiI	CAGNNNCTG	2 cut(s)	332, 686
CfoI	GCGC	2 cut(s)	2255, 2614
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	5 cut(s)	238, 374, 1837, 2366, 2575
ClaI	ATCGAT	1 cut(s)	1551
Csp6I	GTAC	6 cut(s)	595, 1185, 1347, 1466, 2355, 2529
CspAI	ACCGGT	1 cut(s)	623
CspCI	CAANNNNNGTGG	2 cut(s)	2266, 2301
CviQI	GTAC	6 cut(s)	595, 1185, 1347, 1466, 2355, 2529
DdeI	CTNAG	4 cut(s)	774, 901, 1488, 2520
DraI	TTTAAA	3 cut(s)	949, 1266, 1821
DraIII	CACNNNGTG	1 cut(s)	523
EaeI	YGGCCR	3 cut(s)	129, 1394, 2111
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	2 cut(s)	937, 1603
Eco105I	TACGTA	2 cut(s)	583, 594
Eco24I	GRGCYC	2 cut(s)	939, 1605
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	1837, 2366
Eco53kI	GAGCTC	2 cut(s)	937, 1603
Eco57I	CTGAAG	4 cut(s)	1198, 1658, 2277, 2359
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	1501
EcoICRI	GAGCTC	2 cut(s)	937, 1603
EcoO109I	RGGNCCY	2 cut(s)	1837, 2575
EcoO65I	GGTNACC	1 cut(s)	1501
EcoRI	GAATTC	3 cut(s)	1105, 1330, 2173
EcoRII	CCWGG	2 cut(s)	1396, 1793
EcoT38I	GRGCYC	2 cut(s)	939, 1605
Esp3I	CGTCTC	1 cut(s)	2886
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	3 cut(s)	638, 1850, 2165
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	585
FokI	GGATG	6 cut(s)	215, 1096, 1378, 1437, 1637, 2482
FriOI	GRGCYC	2 cut(s)	939, 1605
GlaI	GCGC	2 cut(s)	2254, 2613
HaeIII	GGCC	7 cut(s)	131, 239, 375, 1396, 2113, 2559, 2577
HapII	CCGG	6 cut(s)	624, 1304, 1622, 1761, 2526, 2885
HhaI	GCGC	2 cut(s)	2255, 2614
Hin1I	GRCGYC	1 cut(s)	2600
Hin6I	GCGC	2 cut(s)	2253, 2612
HinP1I	GCGC	2 cut(s)	2253, 2612
HincII	GTYRAC	2 cut(s)	184, 2756
HindII	GTYRAC	2 cut(s)	184, 2756
HindIII	AAGCTT	6 cut(s)	397, 1084, 1951, 2222, 2324, 2566
HpaII	CCGG	6 cut(s)	624, 1304, 1622, 1761, 2526, 2885
HphI	GGTGA	4 cut(s)	1220, 1777, 2225, 2793
Hpy166II	GTNNAC	7 cut(s)	184, 586, 751, 1349, 2496, 2531, 2756
Hpy188I	TCNGA	8 cut(s)	204, 342, 497, 924, 1097, 1677, 1830, 2378
Hpy188III	TCNNGA	9 cut(s)	49, 832, 1151, 2023, 2501, 2513, 2676, 2685, 2885
Hpy8I	GTNNAC	7 cut(s)	184, 586, 751, 1349, 2496, 2531, 2756
HpyAV	CCTTC	9 cut(s)	471, 596, 809, 1123, 1362, 1601, 2453, 2688, 2840
HpyCH4III	ACNGT	5 cut(s)	316, 1501, 1578, 2098, 2119
HpyCH4IV	ACGT	4 cut(s)	582, 593, 2451, 2600
HpyF3I	CTNAG	4 cut(s)	774, 901, 1488, 2520
HpySE526I	ACGT	4 cut(s)	582, 593, 2451, 2600
Hsp92I	GRCGYC	1 cut(s)	2600
HspAI	GCGC	2 cut(s)	2253, 2612
Kpn2I	TCCGGA	1 cut(s)	2884
Ksp22I	TGATCA	1 cut(s)	45
LmnI	GCTCC	5 cut(s)	934, 942, 1797, 2274, 2662
Lsp1109I	GCAGC	7 cut(s)	127, 149, 338, 1552, 2094, 2116, 2639
LweI	GCATC	5 cut(s)	237, 1024, 1675, 2093, 2807
MaeII	ACGT	4 cut(s)	582, 593, 2451, 2600
MaeIII	GTNAC	9 cut(s)	379, 832, 1208, 1495, 1501, 1534, 1578, 2119, 2452
MflI	RGATCY	5 cut(s)	337, 1126, 1431, 1721, 2134
MhlI	GDGCHC	6 cut(s)	435, 649, 753, 939, 1605, 2667
MlsI	TGGCCA	1 cut(s)	1396
MluNI	TGGCCA	1 cut(s)	1396
MlyI	GAGTC	4 cut(s)	506, 747, 906, 2225
MmeI	TCCRAC	2 cut(s)	997, 1051
Mox20I	TGGCCA	1 cut(s)	1396
MroI	TCCGGA	1 cut(s)	2884
MroXI	GAANNNNTTC	3 cut(s)	24, 1917, 2177
MscI	TGGCCA	1 cut(s)	1396
MslI	CAYNNNNRTG	4 cut(s)	41, 233, 663, 1775
Msp20I	TGGCCA	1 cut(s)	1396
MspA1I	CMGCKG	2 cut(s)	140, 2107
MspCI	CTTAAG	1 cut(s)	2225
MspI	CCGG	6 cut(s)	624, 1304, 1622, 1761, 2526, 2885
MspR9I	CCNGG	2 cut(s)	1398, 1795
Mva1269I	GAATGC	2 cut(s)	24, 2410
MvaI	CCWGG	2 cut(s)	1398, 1795
MvnI	CGCG	1 cut(s)	2612
NcoI	CCATGG	3 cut(s)	132, 1808, 2241
NlaIV	GGNNCC	3 cut(s)	1630, 1838, 2576
NmuCI	GTSAC	6 cut(s)	379, 832, 1208, 1534, 2119, 2452
NspI	RCATGY	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	242
PciI	ACATGT	1 cut(s)	753
PctI	GAATGC	2 cut(s)	24, 2410
PdmI	GAANNNNTTC	3 cut(s)	24, 1917, 2177
PfeI	GAWTC	8 cut(s)	606, 868, 1092, 1403, 1511, 1757, 2019, 2698
Pfl23II	CGTACG	1 cut(s)	594
PflFI	GACNNNGTC	1 cut(s)	2156
PinAI	ACCGGT	1 cut(s)	623
PleI	GAGTC	4 cut(s)	506, 746, 905, 2224
PpsI	GAGTC	4 cut(s)	506, 746, 905, 2224
Ppu21I	YACGTR	2 cut(s)	583, 594
PpuMI	RGGWCCY	1 cut(s)	1837
PscI	ACATGT	1 cut(s)	753
PshAI	GACNNNNGTC	1 cut(s)	1215
PshBI	ATTAAT	1 cut(s)	1077
Psp124BI	GAGCTC	2 cut(s)	939, 1605
Psp5II	RGGWCCY	1 cut(s)	1837
Psp6I	CCWGG	2 cut(s)	1396, 1793
PspEI	GGTNACC	1 cut(s)	1501
PspGI	CCWGG	2 cut(s)	1396, 1793
PspLI	CGTACG	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	1630, 1838, 2576
PspPI	GGNCC	5 cut(s)	238, 374, 1837, 2366, 2575
PspPPI	RGGWCCY	1 cut(s)	1837
PspXI	VCTCGAGB	1 cut(s)	242
PstI	CTGCAG	2 cut(s)	337, 1570
PstNI	CAGNNNCTG	2 cut(s)	332, 686
PsuI	RGATCY	5 cut(s)	337, 1126, 1431, 1721, 2134
PsyI	GACNNNGTC	1 cut(s)	2156
PvuII	CAGCTG	2 cut(s)	140, 2107
RsaI	GTAC	6 cut(s)	596, 1186, 1348, 1467, 2356, 2530
RsaNI	GTAC	6 cut(s)	595, 1185, 1347, 1466, 2355, 2529
RseI	CAYNNNNRTG	4 cut(s)	41, 233, 663, 1775
SacI	GAGCTC	2 cut(s)	939, 1605
Sau96I	GGNCC	5 cut(s)	238, 374, 1837, 2366, 2575
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	4 cut(s)	506, 747, 906, 2225
ScrFI	CCNGG	2 cut(s)	1398, 1795
SduI	GDGCHC	6 cut(s)	435, 649, 753, 939, 1605, 2667
SfaNI	GCATC	5 cut(s)	237, 1024, 1675, 2093, 2807
SfcI	CTRYAG	2 cut(s)	333, 1566
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	2 cut(s)	1837, 2366
SlaI	CTCGAG	1 cut(s)	242
SmiI	ATTTAAAT	1 cut(s)	1266
SmiMI	CAYNNNNRTG	4 cut(s)	41, 233, 663, 1775
SmlI	CTYRAG	4 cut(s)	242, 1149, 2225, 2499
SmoI	CTYRAG	4 cut(s)	242, 1149, 2225, 2499
SnaBI	TACGTA	2 cut(s)	583, 594
SpeI	ACTAGT	1 cut(s)	1343
SsiI	CCGC	6 cut(s)	128, 143, 955, 1733, 2110, 2547
SstI	GAGCTC	2 cut(s)	939, 1605
StyD4I	CCNGG	2 cut(s)	1396, 1793
SwaI	ATTTAAAT	1 cut(s)	1266
TaaI	ACNGT	5 cut(s)	316, 1501, 1578, 2098, 2119
TaiI	ACGT	4 cut(s)	585, 596, 2454, 2603
TaqI	TCGA	8 cut(s)	243, 1121, 1361, 1551, 1599, 1903, 2701, 2864
TaqII	GACCGA	1 cut(s)	435
TatI	WGTACW	2 cut(s)	1184, 1346
TauI	GCSGC	3 cut(s)	131, 2113, 2550
TfiI	GAWTC	8 cut(s)	606, 868, 1092, 1403, 1511, 1757, 2019, 2698
TscAI	CASTG	6 cut(s)	168, 384, 691, 1543, 1575, 1639
TseFI	GTSAC	6 cut(s)	379, 832, 1208, 1534, 2119, 2452
TseI	GCWGC	7 cut(s)	137, 140, 326, 1565, 2104, 2107, 2627
Tsp45I	GTSAC	6 cut(s)	379, 832, 1208, 1534, 2119, 2452
TspGWI	ACGGA	3 cut(s)	612, 855, 2138
TspRI	CASTG	6 cut(s)	168, 384, 691, 1543, 1575, 1639
Tth111I	GACNNNGTC	1 cut(s)	2156
Vha464I	CTTAAG	1 cut(s)	2225
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	1837, 2366
VspI	ATTAAT	1 cut(s)	1077
XapI	RAATTY	7 cut(s)	550, 883, 1105, 1330, 1679, 2173, 2715
XceI	RCATGY	1 cut(s)	757
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	3 cut(s)	24, 1917, 2177
ZraI	GACGTC	1 cut(s)	2601
ZrmI	AGTACT	1 cut(s)	1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.