Rh3DG338400

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000051
Physical Location & Seq
Forward (+)
37738959 .. 37742210
3252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG338400.1

Sequence Viewer

Length: 2745 bp
ATGATTCCAGTGGGGCTTGTTCTCGATGACTATAGTTCAGTGCGGGGCAAGATTTTGTTGAGTGTCTTCCAAATGGCCCTCTCTGACATCTCTGCTTATCACCCTAGCTACAAGACCAGACTGGTCTTGAAAACTGGGGAGTCGAAAAAAAATGTTGTTGGGGCAGCTGCCGCTGCTCTAAATCTGATAAAGAATGAAGAAGTGCAAGCCATCATCGGGCCGGTGACATCAATGGAGACAAGCTTTGTCATCAATCTCGGAGACCAAACTCATGTGCCGATCATATCATTTTCAGCAACAAGTCCTTCGCTTACTTCCCTCCGGAGCTCCTACTTTTTCCAGTTTGCACAAAATGACACATCCCAAGTGAGAGCTATAAGTGCAGTCATTAACAATTACGGGTGGAGACAAGTTGTGCCTATATACATAGACACTTCGTACGGGGAGGCAGTCATACCATTCTTAACCGATGCCTTACAAGAGATAGGTGTAAGTGTCCCCTACCGGAGTGTGATTTCCCCCTCTGCAACTGATGATCAAATTGCCAACGAGCTTTACAAGCTAATGATCATGCAAACTAGAGTCTTCATTGTCCATATGACAACCGATCTAAGCTCTAAGCTATTTGCCAAGGCAGAAGAGATTGGAATGATGGTTGAAGGCTATGTTTGGCTAACCACAAGTGGAATAACTAATCGTTTAACATCACTGAACTCTTCAGTAATCCATTCCATGAATGGAGCCATAGGTGTGCAAACTCATGTCCAAAAAACAGCAGAGCTAGAAGAATTCAAACTCCGGTGGAAAAGGCAATTCCAAAAGGACCATCCACTCATCGTTGGCGCTGAATTGGATGTTTTCGGATTTTGGGCTTATGATGCTACTTTTGCACTAGCAATGGCAATTGAACAAGTGATTGGCAATACAAGTAGTTTTGATTTCCAAAAGCCAAATGCCTCCAACAAGTCCACAGATATTCTTGACAGTTTTCCAATCTCTCCATATGGTCCAAAACTTTGCAAAGCCCTATCAACTACTAGATTCCCAGGCATTGCTGGAGATTTAATGCTCATTGATGGGCAACTTCAATCATCTAATTTTCGGATAATTAATGTCAACGGCCGTGGAGCAAGAACAATTGGATTTTGGACACCACACCATGGACTTGTTAGCAAAATGAATTATTCCACAAGCCATCTTGGACCTGTCATATGGCCAGGAGAGTCTCTCTCTGTTCCCAAAGGGTGGGAGATCCCAACAAAGGGCAAGAAGTTGAGAATAGGAGTTCCTGTAAAGGATGGGTTTTTCGAGCTTGTTAAGGTAACAAAAGATCCAACCAAGAACACAACGGATGTTACCGGATTCAGTATTGATGTGTTTAAGGCCGTAGTTGAGAAGTTGCCATATGCTATTTCGTATGACTTCATTCCTTTTGCAAAGCCTGATGGCACCCCAGCTGGCAATTACAATGATATGTGCTATCAAGTGTACCTTGGGAAGTTTGATGCTGTGGTCGGAGATACAACAATTAGAGCAAATAGGTCTCTGTATGTGGACTTTACGATGCCATATGCAGACACCGGAGTAGTAATGGTTGTACCCGTCGTAGACACAAATAAAAGAAGTGCATGGGCATTCTTGAAGCCATGGGAATGGGACATTTGGCTTGCAATCATTATTTCCTTATTGTCAGTTGGTTTTGTCGTATGGGCCGTTGAACATCACACTAATGAAGACTTTCGGGGCAAAACAGCAGAGCAAGAAGTTGGCAAAGTTGTCTGGTTCTCCTTCTCAACCATGGTTTTTGCTCACCATGAGAGAGTGGATAGCAACTTGGCCAGACTTGTTATGGGTATATGGATATTTGTTGTACTGGTGCTGACAATAAATTACCAAGCAAGTCTAACCTCAATATATACGGTTGAAAAACTTGAGCCAACTATTACCAGTATCCAGGATATATTAAGGAAGGGCGAAAACATTGGCTATATAGCATCTTCTTTTACTTACGAGACGTTGAAGCAAGTAGGTTTTGAAGATTCCAAGCTTAGGGCTTTCGGAAGTATGGAAGCAATTGACGATGCTCTTTCAAACAGTGGCATCGCTGGTTTTGTTGATGAAACACCCTATATGAAGCTTTTTATTGCAAGATATTGCAACAAATATACCATGATTGGACCCATCTTCAAAACCGATGGATTTGGCTTTGTATTTCCAAAACGCTCTCCTCTTCTACCGGATGTTTCCCAGGCAGTCCTGAACATTACCGGAGGAGAAACGATACTGAACATTGAAAACACATGGTTCAAGAAAGACGGCAACTGTGAAGACGGTAGTAACCCAAAAGTTTCCAGTAATAAACTTGAATTGAGAGACTTTCGGGTCCTTTTTGTCACTACCTTGGTGGCTTCAGGACTTGCTCTCATCATATATATAATTCGGTTCAGTTACAAGTATAGGGACGTTTGGAATTCTGAAACATCTATATGTAGAAGGATTGGGGCCATGTTAAAAAAATTTCTTGATATAGACCCCAATTCTCATACTTTTAGAAGCCAGCAGCCGGATGTAGTTACAACCTTTCCAAACAACAATAGCCCAGAAAGTCCGGTACTCATCCAGAATTCAAACCACGCAAATACGAATTATGTATCTTCTGATTTTGATTCTGATTCTGATTCTGGACAGCAACGAACATCTACTGAGTCTCCTGCTGAAGTTCATCGACTGATCAGCAATCACTGA

Protein Analysis

914

Amino Acids

101.71

Weight (kDa)

6.14

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 16 - 307 3e-17 Periplasmic binding protein
ANF_receptor PF01094 21 - 374 5.6e-80 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 440 - 533 6.4e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 448 - 770 4.7e-09 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 551 - 803 4.8e-33 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2381
AccB1I GGYRCC 1 cut(s) 1448
AccB7I CCANNNNNTGG 2 cut(s) 1160, 1245
AccI GTMKAC 1 cut(s) 1608
AccIII TCCGGA 1 cut(s) 321
AciI CCGC 2 cut(s) 43, 171
AclWI GGATC 2 cut(s) 1246, 1325
AcoI YGGCCR 3 cut(s) 1120, 1214, 1836
AcsI RAATTY 4 cut(s) 788, 2470, 2516, 2623
AcuI CTGAAG 3 cut(s) 702, 2394, 2736
AfaI GTAC 5 cut(s) 440, 1490, 1599, 1872, 2613
AfiI CCNNNNNNNGG 7 cut(s) 216, 1160, 1245, 1261, 1262, 2049, 2563
AjnI CCWGG 4 cut(s) 1045, 1216, 1953, 2247
AjuI GAANNNNNNNTTGG 2 cut(s) 900, 932
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 8 cut(s) 230, 255, 400, 1230, 1548, 2006, 2367, 2712
AlwI GGATC 2 cut(s) 1246, 1325
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 8 cut(s) 75, 218, 1120, 1214, 1383, 1710, 1836, 2502
ApeKI GCWGC 4 cut(s) 164, 167, 173, 2560
ApoI RAATTY 4 cut(s) 788, 2470, 2516, 2623
AseI ATTAAT 1 cut(s) 1110
Asp700I GAANNNNTTC 1 cut(s) 1737
AspLEI GCGC 1 cut(s) 845
AspS9I GGNCC 9 cut(s) 76, 218, 823, 1007, 1202, 1710, 2177, 2383, 2502
AsuHPI GGTGA 3 cut(s) 92, 235, 1802
AvaII GGWCC 5 cut(s) 823, 1007, 1202, 2177, 2383
BalI TGGCCA 2 cut(s) 1216, 1838
BanI GGYRCC 1 cut(s) 1448
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 4 cut(s) 58, 577, 1740, 2334
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 4 cut(s) 154, 160, 176, 2572
BccI CCATC 9 cut(s) 218, 646, 834, 1070, 1203, 1292, 1439, 2189, 2189
BceAI ACGGC 5 cut(s) 1107, 1135, 1370, 1697, 2332
BciT130I CCWGG 4 cut(s) 1047, 1218, 1955, 2249
BciVI GTATCC 1 cut(s) 1961
BclI TGATCA 3 cut(s) 535, 567, 2730
BcoDI GTCTC 8 cut(s) 230, 255, 400, 1230, 1548, 2006, 2367, 2712
BfaI CTAG 5 cut(s) 105, 579, 782, 893, 1038
BfmI CTRYAG 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 846
BfuI GTATCC 1 cut(s) 1961
BisI GCNGC 5 cut(s) 165, 168, 171, 174, 2561
BlsI GCNGC 5 cut(s) 166, 169, 172, 175, 2562
Bme1390I CCNGG 4 cut(s) 1047, 1218, 1955, 2249
Bme18I GGWCC 5 cut(s) 823, 1007, 1202, 2177, 2383
BmgT120I GGNCC 9 cut(s) 76, 218, 823, 1007, 1202, 1710, 2177, 2383, 2502
BmiI GGNNCC 5 cut(s) 742, 1450, 2179, 2384, 2503
BmrFI CCNGG 4 cut(s) 1047, 1218, 1955, 2249
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 7 cut(s) 460, 868, 1495, 1554, 2003, 2071, 2109
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 4 cut(s) 58, 577, 1740, 2334
BplI GAGNNNNNCTC 4 cut(s) 1212, 1244, 1214, 1246
BpmI CTGGAG 1 cut(s) 1077
Bpu10I CCTNAGC 1 cut(s) 2048
BpuEI CTTGAG 1 cut(s) 1952
BsaI GGTCTC 2 cut(s) 255, 1548
BsaJI CCNNGG 9 cut(s) 630, 1045, 1123, 1159, 1492, 1646, 1797, 2247, 2400
BsaWI WCCGGW 8 cut(s) 321, 504, 798, 1358, 1580, 2236, 2267, 2608
BsaXI ACNNNNNCTCC 4 cut(s) 1275, 1305, 2692, 2722
Bsc4I CCNNNNNNNGG 7 cut(s) 216, 1160, 1245, 1261, 1262, 2049, 2563
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 7 cut(s) 8, 126, 139, 340, 1878, 1947, 2352
Bse3DI GCAATG 2 cut(s) 903, 1050
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 4 cut(s) 1047, 1218, 1955, 2249
BseDI CCNNGG 9 cut(s) 630, 1045, 1123, 1159, 1492, 1646, 1797, 2247, 2400
BseGI GGATG 8 cut(s) 359, 826, 859, 1303, 1357, 2245, 2572, 2616
BseLI CCNNNNNNNGG 7 cut(s) 216, 1160, 1245, 1261, 1262, 2049, 2563
BseMI GCAATG 2 cut(s) 903, 1050
BseMII CTCAG 1 cut(s) 2694
BseNI ACTGG 7 cut(s) 8, 126, 139, 340, 1878, 1947, 2352
BseRI GAGGAG 2 cut(s) 2217, 2286
BseX3I CGGCCG 1 cut(s) 1120
BseXI GCAGC 4 cut(s) 154, 160, 176, 2572
BseYI CCCAGC 1 cut(s) 1453
BsgI GTGCAG 1 cut(s) 402
Bsh1285I CGRYCG 1 cut(s) 1123
BshFI GGCC 8 cut(s) 77, 220, 1122, 1216, 1385, 1712, 1838, 2504
BshNI GGYRCC 1 cut(s) 1448
BsiEI CGRYCG 1 cut(s) 1123
BsiHKAI GWGCWC 1 cut(s) 329
BsiWI CGTACG 1 cut(s) 438
BslFI GGGAC 3 cut(s) 482, 1670, 2474
BslI CCNNNNNNNGG 7 cut(s) 216, 1160, 1245, 1261, 1262, 2049, 2563
BsmAI GTCTC 8 cut(s) 230, 255, 400, 1230, 1548, 2006, 2367, 2712
BsmBI CGTCTC 1 cut(s) 2006
BsmFI GGGAC 3 cut(s) 482, 1670, 2474
BsmI GAATGC 1 cut(s) 1634
BsnI GGCC 8 cut(s) 77, 220, 1122, 1216, 1385, 1712, 1838, 2504
Bso31I GGTCTC 2 cut(s) 255, 1548
Bsp1286I GDGCHC 1 cut(s) 329
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
Bsp19I CCATGG 3 cut(s) 1159, 1646, 1797
BspACI CCGC 2 cut(s) 43, 171
BspANI GGCC 8 cut(s) 77, 220, 1122, 1216, 1385, 1712, 1838, 2504
BspCNI CTCAG 1 cut(s) 2695
BspEI TCCGGA 1 cut(s) 321
BspLI GGNNCC 5 cut(s) 742, 1450, 2179, 2384, 2503
BspPI GGATC 2 cut(s) 1246, 1325
BspT107I GGYRCC 1 cut(s) 1448
BspTNI GGTCTC 2 cut(s) 255, 1548
BsrDI GCAATG 2 cut(s) 903, 1050
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 7 cut(s) 8, 126, 139, 340, 1878, 1947, 2352
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 9 cut(s) 630, 1045, 1123, 1159, 1492, 1646, 1797, 2247, 2400
BssMI GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
BssT1I CCWWGG 6 cut(s) 630, 1159, 1492, 1646, 1797, 2400
Bst2UI CCWGG 4 cut(s) 1047, 1218, 1955, 2249
Bst4CI ACNGT 5 cut(s) 986, 1921, 2096, 2324, 2333
Bst6I CTCTTC 3 cut(s) 633, 721, 2235
BstC8I GCNNGC 4 cut(s) 207, 1459, 1668, 2558
BstDEI CTNAG 4 cut(s) 611, 618, 2048, 2703
BstDSI CCRYGG 4 cut(s) 1123, 1159, 1646, 1797
BstF5I GGATG 8 cut(s) 359, 826, 859, 1303, 1357, 2245, 2572, 2616
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 1 cut(s) 845
BstKTI GATC 7 cut(s) 282, 538, 570, 610, 1254, 1333, 2733
BstMAI GTCTC 8 cut(s) 230, 255, 400, 1230, 1548, 2006, 2367, 2712
BstMBI GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
BstMCI CGRYCG 1 cut(s) 1123
BstMWI GCNNNNNNNGC 6 cut(s) 170, 173, 380, 559, 878, 887
BstNI CCWGG 4 cut(s) 1047, 1218, 1955, 2249
BstSCI CCNGG 4 cut(s) 1045, 1216, 1953, 2247
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 4 cut(s) 154, 160, 176, 2572
BstV2I GAAGAC 4 cut(s) 58, 577, 1740, 2334
BstX2I RGATCY 2 cut(s) 1251, 1330
BstXI CCANNNNNNTGG 1 cut(s) 1653
BstYI RGATCY 2 cut(s) 1251, 1330
BstZI CGGCCG 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 1961
BsuRI GGCC 8 cut(s) 77, 220, 1122, 1216, 1385, 1712, 1838, 2504
BtgI CCRYGG 4 cut(s) 1123, 1159, 1646, 1797
BtgZI GCGATG 1 cut(s) 2086
BtsCI GGATG 8 cut(s) 359, 826, 859, 1303, 1357, 2245, 2572, 2616
BtsIMutI CAGTG 5 cut(s) 15, 45, 707, 2101, 2740
Cac8I GCNNGC 4 cut(s) 207, 1459, 1668, 2558
CfoI GCGC 1 cut(s) 845
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 9 cut(s) 76, 218, 823, 1007, 1202, 1710, 2177, 2383, 2502
Csp6I GTAC 5 cut(s) 439, 1489, 1598, 1871, 2612
CspCI CAANNNNNGTGG 2 cut(s) 1105, 1140
CviQI GTAC 5 cut(s) 439, 1489, 1598, 1871, 2612
DdeI CTNAG 4 cut(s) 611, 618, 2048, 2703
DpnI GATC 7 cut(s) 281, 537, 569, 609, 1253, 1332, 2732
DpnII GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
DrdI GACNNNNNNGTC 1 cut(s) 2381
DseDI GACNNNNNNGTC 1 cut(s) 2381
EaeI YGGCCR 3 cut(s) 1120, 1214, 1836
EagI CGGCCG 1 cut(s) 1120
Eam1104I CTCTTC 3 cut(s) 633, 721, 2235
EarI CTCTTC 3 cut(s) 633, 721, 2235
Ecl136II GAGCTC 1 cut(s) 327
EclXI CGGCCG 1 cut(s) 1120
Eco130I CCWWGG 6 cut(s) 630, 1159, 1492, 1646, 1797, 2400
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 2 cut(s) 255, 1548
Eco47I GGWCC 5 cut(s) 823, 1007, 1202, 2177, 2383
Eco52I CGGCCG 1 cut(s) 1120
Eco53kI GAGCTC 1 cut(s) 327
Eco57I CTGAAG 3 cut(s) 702, 2394, 2736
EcoICRI GAGCTC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 2383
EcoRI GAATTC 3 cut(s) 788, 2470, 2623
EcoRII CCWGG 4 cut(s) 1045, 1216, 1953, 2247
EcoT14I CCWWGG 6 cut(s) 630, 1159, 1492, 1646, 1797, 2400
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 6 cut(s) 630, 1159, 1492, 1646, 1797, 2400
Esp3I CGTCTC 1 cut(s) 2006
FalI AAGNNNNNCTT 2 cut(s) 1476, 1508
FaqI GGGAC 3 cut(s) 482, 1670, 2474
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 5 cut(s) 597, 1003, 1211, 1405, 1570
FbaI TGATCA 3 cut(s) 535, 567, 2730
FblI GTMKAC 1 cut(s) 1608
Fnu4HI GCNGC 5 cut(s) 165, 168, 171, 174, 2561
FokI GGATG 8 cut(s) 346, 813, 866, 1310, 1364, 2252, 2579, 2603
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 5 cut(s) 165, 168, 171, 174, 2561
FspBI CTAG 5 cut(s) 105, 579, 782, 893, 1038
GlaI GCGC 1 cut(s) 844
GluI GCNGC 5 cut(s) 165, 168, 171, 174, 2561
GsaI CCCAGC 1 cut(s) 1457
GsuI CTGGAG 1 cut(s) 1077
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 8 cut(s) 77, 220, 1122, 1216, 1385, 1712, 1838, 2504
HhaI GCGC 1 cut(s) 845
Hin6I GCGC 1 cut(s) 843
HinP1I GCGC 1 cut(s) 843
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HindIII AAGCTT 3 cut(s) 241, 2045, 2135
HphI GGTGA 3 cut(s) 92, 235, 1802
Hpy166II GTNNAC 5 cut(s) 969, 1117, 1489, 1555, 1609
Hpy8I GTNNAC 5 cut(s) 969, 1117, 1489, 1555, 1609
Hpy99I CGWCG 1 cut(s) 1607
HpyAV CCTTC 5 cut(s) 315, 653, 1798, 1963, 2487
HpyCH4III ACNGT 5 cut(s) 986, 1921, 2096, 2324, 2333
HpyCH4IV ACGT 2 cut(s) 2015, 2463
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 173, 380, 559, 878, 887
HpyF3I CTNAG 4 cut(s) 611, 618, 2048, 2703
HpySE526I ACGT 2 cut(s) 2015, 2463
HspAI GCGC 1 cut(s) 843
Kpn2I TCCGGA 1 cut(s) 321
Ksp22I TGATCA 3 cut(s) 535, 567, 2730
Kzo9I GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
LmnI GCTCC 4 cut(s) 324, 332, 740, 1127
Lsp1109I GCAGC 4 cut(s) 154, 160, 176, 2572
LweI GCATC 7 cut(s) 460, 868, 1495, 1554, 2003, 2071, 2109
MaeI CTAG 5 cut(s) 105, 579, 782, 893, 1038
MaeII ACGT 2 cut(s) 2015, 2463
MaeIII GTNAC 7 cut(s) 223, 1321, 1354, 2336, 2392, 2447, 2572
MalI GATC 7 cut(s) 281, 537, 569, 609, 1253, 1332, 2732
MboI GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
MfeI CAATTG 3 cut(s) 903, 1137, 2073
MflI RGATCY 2 cut(s) 1251, 1330
MhlI GDGCHC 1 cut(s) 329
MlsI TGGCCA 2 cut(s) 1216, 1838
MluNI TGGCCA 2 cut(s) 1216, 1838
MlyI GAGTC 4 cut(s) 149, 591, 1232, 2714
MmeI TCCRAC 3 cut(s) 984, 1358, 1495
MnlI CCTC 8 cut(s) 89, 329, 439, 532, 967, 1918, 2238, 2264
Mox20I TGGCCA 2 cut(s) 1216, 1838
MroI TCCGGA 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 1737
MscI TGGCCA 2 cut(s) 1216, 1838
MseI TTAA 9 cut(s) 390, 464, 701, 1064, 1110, 1317, 1380, 1964, 2510
MslI CAYNNNNRTG 4 cut(s) 749, 1651, 1728, 2485
Msp20I TGGCCA 2 cut(s) 1216, 1838
MspA1I CMGCKG 3 cut(s) 167, 173, 1457
MspR9I CCNGG 4 cut(s) 1047, 1218, 1955, 2249
MunI CAATTG 3 cut(s) 903, 1137, 2073
Mva1269I GAATGC 1 cut(s) 1634
MvaI CCWGG 4 cut(s) 1047, 1218, 1955, 2249
MwoI GCNNNNNNNGC 6 cut(s) 170, 173, 380, 559, 878, 887
NcoI CCATGG 3 cut(s) 1159, 1646, 1797
NdeI CATATG 5 cut(s) 597, 1003, 1211, 1405, 1570
NdeII GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
NlaIV GGNNCC 5 cut(s) 742, 1450, 2179, 2384, 2503
NmuCI GTSAC 2 cut(s) 223, 2392
PcsI WCGNNNNNNNCGW 1 cut(s) 1710
PctI GAATGC 1 cut(s) 1634
PdmI GAANNNNTTC 1 cut(s) 1737
PfeI GAWTC 7 cut(s) 4, 1041, 1362, 2039, 2666, 2672, 2678
Pfl23II CGTACG 1 cut(s) 438
PflMI CCANNNNNTGG 2 cut(s) 1160, 1245
PfoI TCCNGGA 1 cut(s) 1953
PkrI GCNGC 5 cut(s) 166, 169, 172, 175, 2562
PleI GAGTC 4 cut(s) 148, 590, 1231, 2713
PpsI GAGTC 4 cut(s) 148, 590, 1231, 2713
PpuMI RGGWCCY 1 cut(s) 2383
PshBI ATTAAT 1 cut(s) 1110
Psp124BI GAGCTC 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 2383
Psp6I CCWGG 4 cut(s) 1045, 1216, 1953, 2247
PspFI CCCAGC 1 cut(s) 1453
PspGI CCWGG 4 cut(s) 1045, 1216, 1953, 2247
PspLI CGTACG 1 cut(s) 438
PspN4I GGNNCC 5 cut(s) 742, 1450, 2179, 2384, 2503
PspPI GGNCC 9 cut(s) 76, 218, 823, 1007, 1202, 1710, 2177, 2383, 2502
PspPPI RGGWCCY 1 cut(s) 2383
PsuI RGATCY 2 cut(s) 1251, 1330
PvuII CAGCTG 2 cut(s) 167, 1457
RsaI GTAC 5 cut(s) 440, 1490, 1599, 1872, 2613
RsaNI GTAC 5 cut(s) 439, 1489, 1598, 1871, 2612
RseI CAYNNNNRTG 4 cut(s) 749, 1651, 1728, 2485
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 9 cut(s) 390, 464, 701, 1064, 1110, 1317, 1380, 1964, 2510
SatI GCNGC 5 cut(s) 165, 168, 171, 174, 2561
Sau3AI GATC 7 cut(s) 279, 535, 567, 607, 1251, 1330, 2730
Sau96I GGNCC 9 cut(s) 76, 218, 823, 1007, 1202, 1710, 2177, 2383, 2502
SchI GAGTC 4 cut(s) 149, 591, 1232, 2714
ScrFI CCNGG 4 cut(s) 1047, 1218, 1955, 2249
SduI GDGCHC 1 cut(s) 329
SfaNI GCATC 7 cut(s) 460, 868, 1495, 1554, 2003, 2071, 2109
SfcI CTRYAG 1 cut(s) 31
SinI GGWCC 5 cut(s) 823, 1007, 1202, 2177, 2383
SmiMI CAYNNNNRTG 4 cut(s) 749, 1651, 1728, 2485
SmlI CTYRAG 1 cut(s) 1931
SmoI CTYRAG 1 cut(s) 1931
SsiI CCGC 2 cut(s) 43, 171
SspMI CTAG 5 cut(s) 105, 579, 782, 893, 1038
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 4 cut(s) 1045, 1216, 1953, 2247
StyI CCWWGG 6 cut(s) 630, 1159, 1492, 1646, 1797, 2400
TaaI ACNGT 5 cut(s) 986, 1921, 2096, 2324, 2333
TaiI ACGT 2 cut(s) 2018, 2466
TaqI TCGA 4 cut(s) 24, 143, 1308, 2725
TatI WGTACW 1 cut(s) 1870
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 7 cut(s) 4, 1041, 1362, 2039, 2666, 2672, 2678
Tru1I TTAA 9 cut(s) 390, 464, 701, 1064, 1110, 1317, 1380, 1964, 2510
Tru9I TTAA 9 cut(s) 390, 464, 701, 1064, 1110, 1317, 1380, 1964, 2510
TscAI CASTG 4 cut(s) 15, 45, 714, 2101
TseFI GTSAC 2 cut(s) 223, 2392
TseI GCWGC 4 cut(s) 164, 167, 173, 2560
Tsp45I GTSAC 2 cut(s) 223, 2392
TspDTI ATGAA 9 cut(s) 210, 577, 749, 1193, 1414, 1746, 2133, 2147, 2711
TspGWI ACGGA 1 cut(s) 1364
TspRI CASTG 4 cut(s) 15, 45, 714, 2101
Van91I CCANNNNNTGG 2 cut(s) 1160, 1245
VpaK11BI GGWCC 5 cut(s) 823, 1007, 1202, 2177, 2383
VspI ATTAAT 1 cut(s) 1110
XapI RAATTY 4 cut(s) 788, 2470, 2516, 2623
XcmI CCANNNNNNNNNTGG 2 cut(s) 734, 1846
XmiI GTMKAC 1 cut(s) 1608
XmnI GAANNNNTTC 1 cut(s) 1737
XspI CTAG 5 cut(s) 105, 579, 782, 893, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.