FvH4_1g01361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
682287 .. 683574
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01361.t1

Sequence Viewer

Length: 357 bp
ATGATGTACTTTCTGGTAATTCTCTCTCTCAAACTATACGTGTGTGTGTATATATATCATCAGAGAGAATGTAGAGCGGACGTCCGCACTCGGATTAAAGTGCGGACGTCCGTCCGTTCTCCACCCTTCGGCGCCGGCGACGGCGCGTCTCCACCCCAGAAGACTCCAGCAGCATCCCTGACCACTTTCCCTCCTCGCCGGAAAACTGGAAAAGAATTGAAGCTGTTAAAGTTAAACATTTATACGACAGACCGAATCAAAGCATTGAAGATTCTAATGTCTGATTATGTTGAGCTTTTCCACGCTCTTGATAAAGAGGAAGAAAAGATGGAGTTCATTACTCAGCTTATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.64

Weight (kDa)

9.66

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 84, 110
AccB1I GGYRCC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 77
AccII CGCG 1 cut(s) 146
AciI CCGC 3 cut(s) 77, 85, 103
AcyI GRCGYC 3 cut(s) 81, 107, 132
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 2 cut(s) 220, 268
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 3 cut(s) 223, 295, 346
AluI AGCT 3 cut(s) 223, 295, 346
Alw26I GTCTC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 170
AspLEI GCGC 2 cut(s) 134, 146
BanI GGYRCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmeRI GACNNNNNGTC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 182
BoxI GACNNNNGTC 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 40
BsaHI GRCGYC 3 cut(s) 81, 107, 132
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 2 cut(s) 135, 199
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BspACI CCGC 3 cut(s) 77, 85, 103
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 134
BssNI GRCGYC 3 cut(s) 81, 107, 132
BstACI GRCGYC 3 cut(s) 81, 107, 132
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 342, 354
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 146
BstMAI GTCTC 1 cut(s) 153
BstPAI GACNNNNGTC 1 cut(s) 110
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 2 cut(s) 134, 146
Cfr10I RCCGGY 1 cut(s) 134
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 3 cut(s) 223, 295, 346
CviKI_1 RGCY 3 cut(s) 223, 295, 346
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 342, 354
DinI GGCGCC 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 153
FaiI YATR 6 cut(s) 37, 51, 53, 55, 243, 288
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 171
GlaI GCGC 2 cut(s) 133, 145
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 135
HapII CCGG 2 cut(s) 135, 199
HgaI GACGC 1 cut(s) 135
HhaI GCGC 2 cut(s) 134, 146
Hin1I GRCGYC 3 cut(s) 81, 107, 132
Hin6I GCGC 2 cut(s) 132, 144
HinP1I GCGC 2 cut(s) 132, 144
HinfI GANTC 3 cut(s) 163, 255, 271
HpaII CCGG 2 cut(s) 135, 199
Hpy188I TCNGA 3 cut(s) 63, 93, 283
Hpy188III TCNNGA 1 cut(s) 308
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 3 cut(s) 39, 81, 107
HpyF3I CTNAG 2 cut(s) 342, 354
HpySE526I ACGT 3 cut(s) 39, 81, 107
Hsp92I GRCGYC 3 cut(s) 81, 107, 132
HspAI GCGC 2 cut(s) 132, 144
KasI GGCGCC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
LpnPI CCDG 6 cut(s) 148, 170, 180, 191, 192, 212
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 182
MaeII ACGT 3 cut(s) 39, 81, 107
MbiI CCGCTC 1 cut(s) 77
MboII GAAGA 3 cut(s) 172, 280, 332
MluCI AATT 2 cut(s) 18, 215
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 3 cut(s) 201, 204, 310
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 3 cut(s) 96, 227, 233
MspI CCGG 2 cut(s) 135, 199
MvnI CGCG 1 cut(s) 146
NaeI GCCGGC 1 cut(s) 136
NarI GGCGCC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 255, 271
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 157
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 40
PshAI GACNNNNGTC 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 3 cut(s) 96, 227, 233
SatI GCNGC 1 cut(s) 171
SchI GAGTC 1 cut(s) 157
SetI ASST 6 cut(s) 42, 84, 110, 225, 297, 348
SfaNI GCATC 1 cut(s) 182
SfoI GGCGCC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 134
Sse9I AATT 2 cut(s) 18, 215
SsiI CCGC 3 cut(s) 77, 85, 103
SspDI GGCGCC 1 cut(s) 131
TaiI ACGT 3 cut(s) 42, 84, 110
TaqII GACCGA 1 cut(s) 267
TasI AATT 2 cut(s) 18, 215
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 255, 271
Tru1I TTAA 3 cut(s) 96, 227, 233
Tru9I TTAA 3 cut(s) 96, 227, 233
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 2 cut(s) 100, 104
ZraI GACGTC 2 cut(s) 82, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.