FvH4_5g38271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Reverse (-)
28303040 .. 28303876
837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38271.t1

Sequence Viewer

Length: 702 bp
ATGTCTAGAAGGAAGTTTGAGGAAATTCGATCGGGAAGTGGTGCAAAAATGGAAATCCGCACCAAAACTTTGATGTGGACGCTCGCACCTGATCAGCATTGTGTCGTCGGCAACGGCCCTTCTCTTCCCGGACGGACACTAGACGTCGATCGTGAGCTTCCTCTTGCCGGCGAACTCGCCGAATATCAGTTTGCAGCCGAGATTGATGTTGTCAAAAGTTTTGGGTGGAGGTTGCTGCCCAGACCTTCAACTCTGATCTCCATGGCCTTCATCTTCACGTTAAATAGGTCCGGGATGCCTCTGGTGTCCGTCCGGCAAGAGAAAGGACGTCGTCGGCGCTTGATCGCTGCAAAAGCAGGGACGTTCGCACTTTTACGGGATGAGAAGCAGACATCCGCACTCGGCTTAAAGTGCGGACCTCCGTCGGTTCTCCACCCTCCTACGCCGGCGACGGCGCGCCTCCACCCCAGAACACTCCAGCAGCGTCCCCGACTACTTTCCCTCCCCGGCGAGTCCGTTCTTTTCCAGTTTCCGGCGAGATTGATCTTGTTTGAAGTTTTGGGTGATCTCGCCGGAAAACTGAAAAAGAACGGACTCGCCGGGGAGAGAAAGTGGTCGGGAACACTGCTGGAGTGTTCTGGGGTGGAGGCGCGCCGTCGCCGGCGCCGGATGGTGGAGAACGGACGGAGGTCCGCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.99

Weight (kDa)

11.18

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 147, 331
AccB1I GGYRCC 1 cut(s) 663
AccII CGCG 2 cut(s) 457, 652
AciI CCGC 4 cut(s) 58, 396, 414, 693
AcsI RAATTY 1 cut(s) 24
AcyI GRCGYC 3 cut(s) 144, 328, 664
AfiI CCNNNNNNNGG 3 cut(s) 167, 532, 673
AgsI TTSAA 2 cut(s) 249, 554
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AoxI GGCC 2 cut(s) 115, 264
ApeKI GCWGC 4 cut(s) 194, 235, 347, 481
ApoI RAATTY 1 cut(s) 24
AscI GGCGCGCC 2 cut(s) 455, 650
AspLEI GCGC 6 cut(s) 339, 457, 459, 652, 654, 666
AspS9I GGNCC 4 cut(s) 116, 288, 416, 690
AsuC2I CCSGG 4 cut(s) 129, 292, 507, 601
AsuHPI GGTGA 1 cut(s) 575
AvaII GGWCC 3 cut(s) 288, 416, 690
BanI GGYRCC 1 cut(s) 663
BbvI GCAGC 4 cut(s) 206, 222, 334, 493
BccI CCATC 1 cut(s) 664
BceAI ACGGC 3 cut(s) 130, 468, 639
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 4 cut(s) 129, 292, 507, 601
BfaI CTAG 2 cut(s) 6, 140
BfoI RGCGCY 2 cut(s) 340, 667
BisI GCNGC 4 cut(s) 195, 236, 348, 482
BlsI GCNGC 4 cut(s) 196, 237, 349, 483
Bme1390I CCNGG 4 cut(s) 129, 292, 507, 601
Bme18I GGWCC 3 cut(s) 288, 416, 690
BmgT120I GGNCC 4 cut(s) 116, 288, 416, 690
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 4 cut(s) 129, 292, 507, 601
BmsI GCATC 1 cut(s) 285
BoxI GACNNNNGTC 2 cut(s) 421, 688
BpmI CTGGAG 2 cut(s) 461, 650
BpuMI CCSGG 4 cut(s) 129, 292, 507, 601
BsaHI GRCGYC 3 cut(s) 144, 328, 664
BsaJI CCNNGG 3 cut(s) 261, 505, 600
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 596, 626
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 532, 673
Bse118I RCCGGY 3 cut(s) 167, 445, 660
Bse1I ACTGG 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 261, 505, 600
BseGI GGATG 4 cut(s) 300, 385, 392, 675
BseLI CCNNNNNNNGG 3 cut(s) 167, 532, 673
BseNI ACTGG 1 cut(s) 526
BsePI GCGCGC 2 cut(s) 455, 650
BseXI GCAGC 4 cut(s) 206, 222, 334, 493
Bsh1236I CGCG 2 cut(s) 457, 652
Bsh1285I CGRYCG 2 cut(s) 32, 151
BshFI GGCC 2 cut(s) 117, 266
BshNI GGYRCC 1 cut(s) 663
BsiEI CGRYCG 2 cut(s) 32, 151
BslFI GGGAC 2 cut(s) 373, 471
BslI CCNNNNNNNGG 3 cut(s) 167, 532, 673
BsmFI GGGAC 2 cut(s) 373, 471
BsnI GGCC 2 cut(s) 117, 266
Bsp143I GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 4 cut(s) 58, 396, 414, 693
BspANI GGCC 2 cut(s) 117, 266
BspFNI CGCG 2 cut(s) 457, 652
BspLI GGNNCC 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 663
BsrFI RCCGGY 3 cut(s) 167, 445, 660
BsrI ACTGG 1 cut(s) 526
BssAI RCCGGY 3 cut(s) 167, 445, 660
BssECI CCNNGG 3 cut(s) 261, 505, 600
BssHII GCGCGC 2 cut(s) 455, 650
BssMI GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
BssNI GRCGYC 3 cut(s) 144, 328, 664
BssT1I CCWWGG 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 3 cut(s) 144, 328, 664
BstC8I GCNNGC 6 cut(s) 84, 169, 447, 457, 652, 662
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 300, 385, 392, 675
BstFNI CGCG 2 cut(s) 457, 652
BstH2I RGCGCY 2 cut(s) 340, 667
BstHHI GCGC 6 cut(s) 339, 457, 459, 652, 654, 666
BstKTI GATC 7 cut(s) 32, 94, 151, 258, 345, 546, 568
BstMBI GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
BstMCI CGRYCG 2 cut(s) 32, 151
BstMWI GCNNNNNNNGC 2 cut(s) 353, 411
BstPAI GACNNNNGTC 2 cut(s) 421, 688
BstSCI CCNGG 4 cut(s) 127, 290, 505, 599
BstUI CGCG 2 cut(s) 457, 652
BstV1I GCAGC 4 cut(s) 206, 222, 334, 493
BsuRI GGCC 2 cut(s) 117, 266
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 4 cut(s) 300, 385, 392, 675
BtsI GCAGTG 1 cut(s) 623
BtsIMutI CAGTG 1 cut(s) 623
Cac8I GCNNGC 6 cut(s) 84, 169, 447, 457, 652, 662
CfoI GCGC 6 cut(s) 339, 457, 459, 652, 654, 666
Cfr10I RCCGGY 3 cut(s) 167, 445, 660
Cfr13I GGNCC 4 cut(s) 116, 288, 416, 690
CseI GACGC 2 cut(s) 88, 473
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 117, 157, 197, 266, 405
CviKI_1 RGCY 5 cut(s) 117, 157, 197, 266, 405
DinI GGCGCC 1 cut(s) 665
DpnI GATC 7 cut(s) 31, 93, 150, 257, 344, 545, 567
DpnII GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 3 cut(s) 288, 416, 690
EcoT14I CCWWGG 1 cut(s) 261
EgeI GGCGCC 1 cut(s) 665
EheI GGCGCC 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 265
FaiI YATR 1 cut(s) 263
FaqI GGGAC 2 cut(s) 373, 471
FatI CATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 195, 236, 348, 482
FokI GGATG 4 cut(s) 307, 379, 392, 682
Fsp4HI GCNGC 4 cut(s) 195, 236, 348, 482
FspBI CTAG 2 cut(s) 6, 140
GlaI GCGC 6 cut(s) 338, 456, 458, 651, 653, 665
GluI GCNGC 4 cut(s) 195, 236, 348, 482
GsuI CTGGAG 2 cut(s) 461, 650
HaeII RGCGCY 2 cut(s) 340, 667
HaeIII GGCC 2 cut(s) 117, 266
HgaI GACGC 2 cut(s) 88, 473
HhaI GCGC 6 cut(s) 339, 457, 459, 652, 654, 666
Hin1I GRCGYC 3 cut(s) 144, 328, 664
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 6 cut(s) 337, 455, 457, 650, 652, 664
HinP1I GCGC 6 cut(s) 337, 455, 457, 650, 652, 664
HinfI GANTC 2 cut(s) 512, 594
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 6, 33, 152, 618
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 7 cut(s) 110, 149, 333, 336, 427, 454, 660
HpyAV CCTTC 4 cut(s) 3, 129, 255, 277
HpyCH4IV ACGT 4 cut(s) 144, 278, 328, 362
HpyCH4V TGCA 3 cut(s) 44, 194, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 411
HpySE526I ACGT 4 cut(s) 144, 278, 328, 362
Hsp92I GRCGYC 3 cut(s) 144, 328, 664
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 6 cut(s) 337, 455, 457, 650, 652, 664
KasI GGCGCC 1 cut(s) 663
KroI GCCGGC 3 cut(s) 167, 445, 660
KroNI GCCGGC 3 cut(s) 169, 447, 662
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
Lsp1109I GCAGC 4 cut(s) 206, 222, 334, 493
LweI GCATC 1 cut(s) 285
MaeI CTAG 2 cut(s) 6, 140
MaeII ACGT 4 cut(s) 144, 278, 328, 362
MalI GATC 7 cut(s) 31, 93, 150, 257, 344, 545, 567
MboI GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
MboII GAAGA 2 cut(s) 116, 265
MluCI AATT 1 cut(s) 24
Mly113I GGCGCC 1 cut(s) 664
MlyI GAGTC 2 cut(s) 521, 588
MreI CGCCGGCG 2 cut(s) 445, 660
MroNI GCCGGC 3 cut(s) 167, 445, 660
MseI TTAA 3 cut(s) 281, 407, 700
MspR9I CCNGG 4 cut(s) 129, 292, 507, 601
MvnI CGCG 2 cut(s) 457, 652
MwoI GCNNNNNNNGC 2 cut(s) 353, 411
NaeI GCCGGC 3 cut(s) 169, 447, 662
NarI GGCGCC 1 cut(s) 664
NciI CCSGG 4 cut(s) 129, 292, 507, 601
NcoI CCATGG 1 cut(s) 261
NdeII GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
NgoMIV GCCGGC 3 cut(s) 167, 445, 660
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 665
NmeAIII GCCGAG 2 cut(s) 223, 381
PalAI GGCGCGCC 2 cut(s) 455, 650
PauI GCGCGC 2 cut(s) 455, 650
PdiI GCCGGC 3 cut(s) 169, 447, 662
PflFI GACNNNGTC 1 cut(s) 330
PfoI TCCNGGA 2 cut(s) 127, 290
PkrI GCNGC 4 cut(s) 196, 237, 349, 483
Ple19I CGATCG 2 cut(s) 32, 151
PleI GAGTC 2 cut(s) 520, 588
PluTI GGCGCC 1 cut(s) 667
PpsI GAGTC 2 cut(s) 520, 588
PshAI GACNNNNGTC 2 cut(s) 421, 688
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 4 cut(s) 116, 288, 416, 690
PsyI GACNNNGTC 1 cut(s) 330
PteI GCGCGC 2 cut(s) 455, 650
PvuI CGATCG 2 cut(s) 32, 151
SaqAI TTAA 3 cut(s) 281, 407, 700
SatI GCNGC 4 cut(s) 195, 236, 348, 482
Sau3AI GATC 7 cut(s) 29, 91, 148, 255, 342, 543, 565
Sau96I GGNCC 4 cut(s) 116, 288, 416, 690
SchI GAGTC 2 cut(s) 521, 588
ScrFI CCNGG 4 cut(s) 129, 292, 507, 601
SfaNI GCATC 1 cut(s) 285
SfoI GGCGCC 1 cut(s) 665
SgrAI CRCCGGYG 2 cut(s) 445, 660
SgsI GGCGCGCC 2 cut(s) 455, 650
SinI GGWCC 3 cut(s) 288, 416, 690
Sse9I AATT 1 cut(s) 24
SsiI CCGC 4 cut(s) 58, 396, 414, 693
SspDI GGCGCC 1 cut(s) 663
SspMI CTAG 2 cut(s) 6, 140
StyD4I CCNGG 4 cut(s) 127, 290, 505, 599
StyI CCWWGG 1 cut(s) 261
TaiI ACGT 4 cut(s) 147, 281, 331, 365
TaqI TCGA 2 cut(s) 28, 147
TasI AATT 1 cut(s) 24
Tru1I TTAA 3 cut(s) 281, 407, 700
Tru9I TTAA 3 cut(s) 281, 407, 700
TscAI CASTG 1 cut(s) 630
TseI GCWGC 4 cut(s) 194, 235, 347, 481
TspDTI ATGAA 1 cut(s) 259
TspGWI ACGGA 7 cut(s) 148, 298, 411, 505, 606, 696, 700
TspRI CASTG 1 cut(s) 630
Tth111I GACNNNGTC 1 cut(s) 330
VpaK11BI GGWCC 3 cut(s) 288, 416, 690
XapI RAATTY 1 cut(s) 24
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 2 cut(s) 6, 140
ZraI GACGTC 2 cut(s) 145, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.