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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 4 cut(s) | 150, 176, 223, 435 |
| AccB1I | GGYRCC | 2 cut(s) | 244, 501 |
| AccBSI | CCGCTC | 1 cut(s) | 273 |
| AccI | GTMKAC | 1 cut(s) | 475 |
| AccII | CGCG | 4 cut(s) | 34, 48, 110, 395 |
| AciI | CCGC | 5 cut(s) | 151, 169, 177, 273, 283 |
| AclI | AACGTT | 1 cut(s) | 194 |
| AclWI | GGATC | 1 cut(s) | 170 |
| AcsI | RAATTY | 1 cut(s) | 323 |
| AcuI | CTGAAG | 1 cut(s) | 560 |
| AcyI | GRCGYC | 6 cut(s) | 147, 173, 220, 245, 432, 502 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 98, 104, 186, 241 |
| AgsI | TTSAA | 1 cut(s) | 533 |
| AjnI | CCWGG | 2 cut(s) | 453, 584 |
| Alw26I | GTCTC | 1 cut(s) | 82 |
| AlwI | GGATC | 1 cut(s) | 170 |
| Ama87I | CYCGRG | 2 cut(s) | 97, 268 |
| AoxI | GGCC | 1 cut(s) | 456 |
| ApeKI | GCWGC | 1 cut(s) | 72 |
| ApoI | RAATTY | 1 cut(s) | 323 |
| AscI | GGCGCGCC | 3 cut(s) | 46, 108, 393 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 442 |
| AspA2I | CCTAGG | 1 cut(s) | 578 |
| AspS9I | GGNCC | 2 cut(s) | 457, 582 |
| AsuC2I | CCSGG | 3 cut(s) | 98, 99, 499 |
| AsuII | TTCGAA | 1 cut(s) | 547 |
| AvaI | CYCGRG | 2 cut(s) | 97, 268 |
| AvaII | GGWCC | 1 cut(s) | 582 |
| AvrII | CCTAGG | 1 cut(s) | 578 |
| BanI | GGYRCC | 2 cut(s) | 244, 501 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| BbvI | GCAGC | 1 cut(s) | 84 |
| BccI | CCATC | 3 cut(s) | 487, 513, 521 |
| BceAI | ACGGC | 5 cut(s) | 59, 97, 270, 382, 473 |
| BciT130I | CCWGG | 2 cut(s) | 455, 586 |
| BclI | TGATCA | 1 cut(s) | 357 |
| BcnI | CCSGG | 3 cut(s) | 98, 99, 499 |
| BcoDI | GTCTC | 1 cut(s) | 82 |
| BfaI | CTAG | 3 cut(s) | 17, 59, 579 |
| BfoI | RGCGCY | 4 cut(s) | 125, 248, 260, 505 |
| BglII | AGATCT | 1 cut(s) | 535 |
| BisI | GCNGC | 2 cut(s) | 73, 284 |
| BlnI | CCTAGG | 1 cut(s) | 578 |
| BlsI | GCNGC | 2 cut(s) | 74, 285 |
| Bme1390I | CCNGG | 5 cut(s) | 98, 99, 455, 499, 586 |
| Bme18I | GGWCC | 1 cut(s) | 582 |
| BmeT110I | CYCGRG | 2 cut(s) | 97, 268 |
| BmgT120I | GGNCC | 2 cut(s) | 457, 582 |
| BmiI | GGNNCC | 3 cut(s) | 246, 459, 503 |
| BmrFI | CCNGG | 5 cut(s) | 98, 99, 455, 499, 586 |
| BmsI | GCATC | 3 cut(s) | 209, 295, 355 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 14, 46 |
| BpmI | CTGGAG | 3 cut(s) | 52, 146, 468 |
| Bpu10I | CCTNAGC | 1 cut(s) | 382 |
| Bpu14I | TTCGAA | 1 cut(s) | 547 |
| BpuMI | CCSGG | 3 cut(s) | 98, 99, 499 |
| BsaHI | GRCGYC | 6 cut(s) | 147, 173, 220, 245, 432, 502 |
| BsaJI | CCNNGG | 6 cut(s) | 96, 97, 453, 497, 578, 636 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 77, 107 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 98, 104, 186, 241 |
| Bse118I | RCCGGY | 1 cut(s) | 335 |
| Bse1I | ACTGG | 1 cut(s) | 328 |
| BseBI | CCWGG | 2 cut(s) | 455, 586 |
| BseDI | CCNNGG | 6 cut(s) | 96, 97, 453, 497, 578, 636 |
| BseGI | GGATG | 3 cut(s) | 286, 370, 505 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 98, 104, 186, 241 |
| BseMII | CTCAG | 1 cut(s) | 396 |
| BseNI | ACTGG | 1 cut(s) | 328 |
| BsePI | GCGCGC | 3 cut(s) | 46, 108, 393 |
| BseRI | GAGGAG | 2 cut(s) | 224, 251 |
| BseXI | GCAGC | 1 cut(s) | 84 |
| BseYI | CCCAGC | 1 cut(s) | 308 |
| Bsh1236I | CGCG | 4 cut(s) | 34, 48, 110, 395 |
| BshFI | GGCC | 1 cut(s) | 458 |
| BshNI | GGYRCC | 2 cut(s) | 244, 501 |
| BsiHKCI | CYCGRG | 2 cut(s) | 97, 268 |
| BsiSI | CCGG | 5 cut(s) | 98, 242, 336, 499, 519 |
| BslFI | GGGAC | 2 cut(s) | 158, 207 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 98, 104, 186, 241 |
| BsmAI | GTCTC | 1 cut(s) | 82 |
| BsmBI | CGTCTC | 1 cut(s) | 82 |
| BsmFI | GGGAC | 2 cut(s) | 158, 207 |
| BsnI | GGCC | 1 cut(s) | 458 |
| BsoBI | CYCGRG | 2 cut(s) | 97, 268 |
| Bsp119I | TTCGAA | 1 cut(s) | 547 |
| Bsp143I | GATC | 4 cut(s) | 162, 293, 357, 535 |
| Bsp19I | CCATGG | 1 cut(s) | 636 |
| BspACI | CCGC | 5 cut(s) | 151, 169, 177, 273, 283 |
| BspANI | GGCC | 1 cut(s) | 458 |
| BspCNI | CTCAG | 1 cut(s) | 395 |
| BspFNI | CGCG | 4 cut(s) | 34, 48, 110, 395 |
| BspLI | GGNNCC | 3 cut(s) | 246, 459, 503 |
| BspPI | GGATC | 1 cut(s) | 170 |
| BspT104I | TTCGAA | 1 cut(s) | 547 |
| BspT107I | GGYRCC | 2 cut(s) | 244, 501 |
| BsrBI | CCGCTC | 1 cut(s) | 273 |
| BsrFI | RCCGGY | 1 cut(s) | 335 |
| BsrI | ACTGG | 1 cut(s) | 328 |
| BssAI | RCCGGY | 1 cut(s) | 335 |
| BssECI | CCNNGG | 6 cut(s) | 96, 97, 453, 497, 578, 636 |
| BssHII | GCGCGC | 3 cut(s) | 46, 108, 393 |
| BssMI | GATC | 4 cut(s) | 162, 293, 357, 535 |
| BssNI | GRCGYC | 6 cut(s) | 147, 173, 220, 245, 432, 502 |
| BssT1I | CCWWGG | 2 cut(s) | 578, 636 |
| Bst2UI | CCWGG | 2 cut(s) | 455, 586 |
| Bst6I | CTCTTC | 1 cut(s) | 309 |
| BstACI | GRCGYC | 6 cut(s) | 147, 173, 220, 245, 432, 502 |
| BstBI | TTCGAA | 1 cut(s) | 547 |
| BstC8I | GCNNGC | 4 cut(s) | 48, 110, 337, 395 |
| BstDEI | CTNAG | 2 cut(s) | 382, 567 |
| BstDSI | CCRYGG | 1 cut(s) | 636 |
| BstF5I | GGATG | 3 cut(s) | 286, 370, 505 |
| BstFNI | CGCG | 4 cut(s) | 34, 48, 110, 395 |
| BstH2I | RGCGCY | 4 cut(s) | 125, 248, 260, 505 |
| BstKTI | GATC | 4 cut(s) | 165, 296, 360, 538 |
| BstMAI | GTCTC | 1 cut(s) | 82 |
| BstMBI | GATC | 4 cut(s) | 162, 293, 357, 535 |
| BstNI | CCWGG | 2 cut(s) | 455, 586 |
| BstSCI | CCNGG | 5 cut(s) | 96, 97, 453, 497, 584 |
| BstUI | CGCG | 4 cut(s) | 34, 48, 110, 395 |
| BstV1I | GCAGC | 1 cut(s) | 84 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 1 cut(s) | 535 |
| BstYI | RGATCY | 1 cut(s) | 535 |
| BsuRI | GGCC | 1 cut(s) | 458 |
| BtgI | CCRYGG | 1 cut(s) | 636 |
| BtsCI | GGATG | 3 cut(s) | 286, 370, 505 |
| Cac8I | GCNNGC | 4 cut(s) | 48, 110, 337, 395 |
| Cfr10I | RCCGGY | 1 cut(s) | 335 |
| Cfr13I | GGNCC | 2 cut(s) | 457, 582 |
| Cfr9I | CCCGGG | 1 cut(s) | 97 |
| CseI | GACGC | 1 cut(s) | 64 |
| CviAII | CATG | 1 cut(s) | 637 |
| CviJI | RGCY | 3 cut(s) | 458, 488, 522 |
| CviKI_1 | RGCY | 3 cut(s) | 458, 488, 522 |
| DdeI | CTNAG | 2 cut(s) | 382, 567 |
| DinI | GGCGCC | 2 cut(s) | 246, 503 |
| DpnI | GATC | 4 cut(s) | 164, 295, 359, 537 |
| DpnII | GATC | 4 cut(s) | 162, 293, 357, 535 |
| Eam1104I | CTCTTC | 1 cut(s) | 309 |
| EarI | CTCTTC | 1 cut(s) | 309 |
| EciI | GGCGGA | 1 cut(s) | 166 |
| Eco130I | CCWWGG | 2 cut(s) | 578, 636 |
| Eco47I | GGWCC | 1 cut(s) | 582 |
| Eco57I | CTGAAG | 1 cut(s) | 560 |
| Eco88I | CYCGRG | 2 cut(s) | 97, 268 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRII | CCWGG | 2 cut(s) | 453, 584 |
| EcoT14I | CCWWGG | 2 cut(s) | 578, 636 |
| EgeI | GGCGCC | 2 cut(s) | 246, 503 |
| EheI | GGCGCC | 2 cut(s) | 246, 503 |
| ErhI | CCWWGG | 2 cut(s) | 578, 636 |
| Esp3I | CGTCTC | 1 cut(s) | 82 |
| FaeI | CATG | 1 cut(s) | 640 |
| FaiI | YATR | 1 cut(s) | 638 |
| FaqI | GGGAC | 2 cut(s) | 158, 207 |
| FatI | CATG | 1 cut(s) | 636 |
| FbaI | TGATCA | 1 cut(s) | 357 |
| FblI | GTMKAC | 1 cut(s) | 475 |
| Fnu4HI | GCNGC | 2 cut(s) | 73, 284 |
| FokI | GGATG | 3 cut(s) | 273, 377, 492 |
| Fsp4HI | GCNGC | 2 cut(s) | 73, 284 |
| FspBI | CTAG | 3 cut(s) | 17, 59, 579 |
| GluI | GCNGC | 2 cut(s) | 73, 284 |
| GsaI | CCCAGC | 1 cut(s) | 312 |
| GsuI | CTGGAG | 3 cut(s) | 52, 146, 468 |
| HaeII | RGCGCY | 4 cut(s) | 125, 248, 260, 505 |
| HaeIII | GGCC | 1 cut(s) | 458 |
| HapII | CCGG | 5 cut(s) | 98, 242, 336, 499, 519 |
| HgaI | GACGC | 1 cut(s) | 64 |
| Hin1I | GRCGYC | 6 cut(s) | 147, 173, 220, 245, 432, 502 |
| Hin1II | CATG | 1 cut(s) | 640 |
| HincII | GTYRAC | 1 cut(s) | 476 |
| HindII | GTYRAC | 1 cut(s) | 476 |
| HinfI | GANTC | 3 cut(s) | 65, 314, 544 |
| HpaII | CCGG | 5 cut(s) | 98, 242, 336, 499, 519 |
| Hpy166II | GTNNAC | 2 cut(s) | 218, 476 |
| Hpy188I | TCNGA | 6 cut(s) | 82, 184, 412, 437, 510, 540 |
| Hpy188III | TCNNGA | 1 cut(s) | 533 |
| Hpy8I | GTNNAC | 2 cut(s) | 218, 476 |
| Hpy99I | CGWCG | 7 cut(s) | 42, 45, 118, 121, 323, 403, 406 |
| HpyAV | CCTTC | 2 cut(s) | 410, 421 |
| HpyCH4IV | ACGT | 5 cut(s) | 147, 173, 194, 220, 432 |
| HpyCH4V | TGCA | 1 cut(s) | 200 |
| HpyF3I | CTNAG | 2 cut(s) | 382, 567 |
| HpySE526I | ACGT | 5 cut(s) | 147, 173, 194, 220, 432 |
| Hsp92I | GRCGYC | 6 cut(s) | 147, 173, 220, 245, 432, 502 |
| Hsp92II | CATG | 1 cut(s) | 640 |
| KasI | GGCGCC | 2 cut(s) | 244, 501 |
| KroI | GCCGGC | 1 cut(s) | 335 |
| KroNI | GCCGGC | 1 cut(s) | 337 |
| Ksp22I | TGATCA | 1 cut(s) | 357 |
| Kzo9I | GATC | 4 cut(s) | 162, 293, 357, 535 |
| LmnI | GCTCC | 2 cut(s) | 264, 499 |
| Lsp1109I | GCAGC | 1 cut(s) | 84 |
| LweI | GCATC | 3 cut(s) | 209, 295, 355 |
| MaeI | CTAG | 3 cut(s) | 17, 59, 579 |
| MaeII | ACGT | 5 cut(s) | 147, 173, 194, 220, 432 |
| MalI | GATC | 4 cut(s) | 164, 295, 359, 537 |
| MbiI | CCGCTC | 1 cut(s) | 273 |
| MboI | GATC | 4 cut(s) | 162, 293, 357, 535 |
| MboII | GAAGA | 5 cut(s) | 74, 217, 296, 438, 553 |
| MflI | RGATCY | 1 cut(s) | 535 |
| MluCI | AATT | 1 cut(s) | 323 |
| Mly113I | GGCGCC | 2 cut(s) | 245, 502 |
| MlyI | GAGTC | 2 cut(s) | 59, 323 |
| MmeI | TCCRAC | 3 cut(s) | 105, 390, 533 |
| MroNI | GCCGGC | 1 cut(s) | 335 |
| MroXI | GAANNNNTTC | 1 cut(s) | 442 |
| MseI | TTAA | 4 cut(s) | 158, 351, 600, 632 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| MspA1I | CMGCKG | 1 cut(s) | 283 |
| MspI | CCGG | 5 cut(s) | 98, 242, 336, 499, 519 |
| MspR9I | CCNGG | 5 cut(s) | 98, 99, 455, 499, 586 |
| MvaI | CCWGG | 2 cut(s) | 455, 586 |
| MvnI | CGCG | 4 cut(s) | 34, 48, 110, 395 |
| NaeI | GCCGGC | 1 cut(s) | 337 |
| NarI | GGCGCC | 2 cut(s) | 245, 502 |
| NciI | CCSGG | 3 cut(s) | 98, 99, 499 |
| NcoI | CCATGG | 1 cut(s) | 636 |
| NdeII | GATC | 4 cut(s) | 162, 293, 357, 535 |
| NgoMIV | GCCGGC | 1 cut(s) | 335 |
| NlaIII | CATG | 1 cut(s) | 640 |
| NlaIV | GGNNCC | 3 cut(s) | 246, 459, 503 |
| NspV | TTCGAA | 1 cut(s) | 547 |
| PalAI | GGCGCGCC | 3 cut(s) | 46, 108, 393 |
| PauI | GCGCGC | 3 cut(s) | 46, 108, 393 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 200 |
| PdiI | GCCGGC | 1 cut(s) | 337 |
| PdmI | GAANNNNTTC | 1 cut(s) | 442 |
| PfeI | GAWTC | 1 cut(s) | 544 |
| PkrI | GCNGC | 2 cut(s) | 74, 285 |
| PleI | GAGTC | 2 cut(s) | 59, 322 |
| PluTI | GGCGCC | 2 cut(s) | 248, 505 |
| PpsI | GAGTC | 2 cut(s) | 59, 322 |
| Psp1406I | AACGTT | 1 cut(s) | 194 |
| Psp6I | CCWGG | 2 cut(s) | 453, 584 |
| PspFI | CCCAGC | 1 cut(s) | 308 |
| PspGI | CCWGG | 2 cut(s) | 453, 584 |
| PspN4I | GGNNCC | 3 cut(s) | 246, 459, 503 |
| PspPI | GGNCC | 2 cut(s) | 457, 582 |
| PsuI | RGATCY | 1 cut(s) | 535 |
| PteI | GCGCGC | 3 cut(s) | 46, 108, 393 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SalI | GTCGAC | 1 cut(s) | 474 |
| SaqAI | TTAA | 4 cut(s) | 158, 351, 600, 632 |
| SatI | GCNGC | 2 cut(s) | 73, 284 |
| Sau3AI | GATC | 4 cut(s) | 162, 293, 357, 535 |
| Sau96I | GGNCC | 2 cut(s) | 457, 582 |
| SchI | GAGTC | 2 cut(s) | 59, 323 |
| ScrFI | CCNGG | 5 cut(s) | 98, 99, 455, 499, 586 |
| SetI | ASST | 9 cut(s) | 150, 176, 197, 223, 388, 435, 584, 590, 606 |
| SfaNI | GCATC | 3 cut(s) | 209, 295, 355 |
| SfoI | GGCGCC | 2 cut(s) | 246, 503 |
| SfuI | TTCGAA | 1 cut(s) | 547 |
| SgsI | GGCGCGCC | 3 cut(s) | 46, 108, 393 |
| SinI | GGWCC | 1 cut(s) | 582 |
| SmaI | CCCGGG | 1 cut(s) | 99 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| Sse9I | AATT | 1 cut(s) | 323 |
| SsiI | CCGC | 5 cut(s) | 151, 169, 177, 273, 283 |
| SspDI | GGCGCC | 2 cut(s) | 244, 501 |
| SspMI | CTAG | 3 cut(s) | 17, 59, 579 |
| StyD4I | CCNGG | 5 cut(s) | 96, 97, 453, 497, 584 |
| StyI | CCWWGG | 2 cut(s) | 578, 636 |
| TaiI | ACGT | 5 cut(s) | 150, 176, 197, 223, 435 |
| TaqI | TCGA | 6 cut(s) | 10, 203, 321, 475, 547, 606 |
| TasI | AATT | 1 cut(s) | 323 |
| TauI | GCSGC | 1 cut(s) | 286 |
| TfiI | GAWTC | 1 cut(s) | 544 |
| Tru1I | TTAA | 4 cut(s) | 158, 351, 600, 632 |
| Tru9I | TTAA | 4 cut(s) | 158, 351, 600, 632 |
| TseI | GCWGC | 1 cut(s) | 72 |
| TspDTI | ATGAA | 1 cut(s) | 517 |
| TspGWI | ACGGA | 3 cut(s) | 227, 307, 439 |
| TspMI | CCCGGG | 1 cut(s) | 97 |
| VpaK11BI | GGWCC | 1 cut(s) | 582 |
| XapI | RAATTY | 1 cut(s) | 323 |
| XmaI | CCCGGG | 1 cut(s) | 97 |
| XmaJI | CCTAGG | 1 cut(s) | 578 |
| XmiI | GTMKAC | 1 cut(s) | 475 |
| XmnI | GAANNNNTTC | 1 cut(s) | 442 |
| XspI | CTAG | 3 cut(s) | 17, 59, 579 |
| ZraI | GACGTC | 4 cut(s) | 148, 174, 221, 433 |