FvH4_7g00240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000118
Physical Location & Seq
Forward (+)
845635 .. 847397
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00240.t1

Sequence Viewer

Length: 318 bp
ATGATCGGTTGTGAAGTTCTGAGTGAGATTGCTGCACAGACCTCCGATCACGATCTCTCTGGCCTTCTTCTTCATTCCAACACCGTCGGGGGAGACCTTGATACTGAGCTTCCTCTTGCCAGTGGACTCGCCGGCTACAAGTTTGCAGCCAACCTTGATCGGATAGCCCAAGTTGCGGCACAGAGCTCCGATCCCGATCCCGATGACCTTCTTCTTCATGTCAACGTTGTCCCAAAGGCCTCTGGTGTTGATCCGGCAAGAGAAGCGCCACCGTCGATGCCCCTGAAGGTGGAGAAATCGGCAACACCAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.86

Weight (kDa)

4.37

Isoelectric Point (pI)

26.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclI AACGTT 1 cut(s) 225
AclWI GGATC 3 cut(s) 185, 191, 245
AcuI CTGAAG 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 175, 289
AluBI AGCT 2 cut(s) 109, 186
AluI AGCT 2 cut(s) 109, 186
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 3 cut(s) 185, 191, 245
AoxI GGCC 2 cut(s) 61, 237
ApeKI GCWGC 2 cut(s) 32, 146
AspLEI GCGC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 19, 158
BcoDI GTCTC 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 3 cut(s) 33, 147, 177
BlsI GCNGC 3 cut(s) 34, 148, 178
BmsI GCATC 1 cut(s) 267
BsaBI GATNNNNATC 2 cut(s) 51, 195
BsaI GGTCTC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 289
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 120
Bse8I GATNNNNATC 2 cut(s) 51, 195
BseJI GATNNNNATC 2 cut(s) 51, 195
BseLI CCNNNNNNNGG 2 cut(s) 175, 289
BseMII CTCAG 2 cut(s) 11, 96
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 19, 158
BsgI GTGCAG 1 cut(s) 18
BshFI GGCC 2 cut(s) 63, 239
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 132, 254
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 175, 289
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 63, 239
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
BspACI CCGC 1 cut(s) 176
BspANI GGCC 2 cut(s) 63, 239
BspCNI CTCAG 2 cut(s) 12, 97
BspPI GGATC 3 cut(s) 185, 191, 245
BspTNI GGTCTC 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 131
BssMI GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
Bst4CI ACNGT 2 cut(s) 85, 273
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 20, 105
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 7 cut(s) 6, 49, 55, 160, 193, 199, 253
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
BstMWI GCNNNNNNNGC 2 cut(s) 173, 263
BstV1I GCAGC 2 cut(s) 19, 158
BsuRI GGCC 2 cut(s) 63, 239
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 131
CviAII CATG 1 cut(s) 218
CviJI RGCY 7 cut(s) 63, 109, 135, 149, 167, 186, 239
CviKI_1 RGCY 7 cut(s) 63, 109, 135, 149, 167, 186, 239
DdeI CTNAG 2 cut(s) 20, 105
DpnI GATC 7 cut(s) 5, 48, 54, 159, 192, 198, 252
DpnII GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
Ecl136II GAGCTC 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 1 cut(s) 221
FaiI YATR 1 cut(s) 219
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 33, 147, 177
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 33, 147, 177
GlaI GCGC 1 cut(s) 267
GluI GCNGC 3 cut(s) 33, 147, 177
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 2 cut(s) 63, 239
HapII CCGG 2 cut(s) 132, 254
HhaI GCGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 126
HpaII CCGG 2 cut(s) 132, 254
Hpy166II GTNNAC 2 cut(s) 125, 223
Hpy188I TCNGA 4 cut(s) 21, 46, 162, 190
Hpy188III TCNNGA 3 cut(s) 50, 194, 200
Hpy8I GTNNAC 2 cut(s) 125, 223
Hpy99I CGWCG 2 cut(s) 89, 277
HpyAV CCTTC 3 cut(s) 74, 218, 280
HpyCH4III ACNGT 2 cut(s) 85, 273
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 35, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 263
HpyF3I CTNAG 2 cut(s) 20, 105
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Kzo9I GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 6 cut(s) 45, 133, 145, 228, 267, 296
Lsp1109I GCAGC 2 cut(s) 19, 158
LweI GCATC 1 cut(s) 267
MaeII ACGT 1 cut(s) 225
MalI GATC 7 cut(s) 5, 48, 54, 159, 192, 198, 252
MboI GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
MboII GAAGA 4 cut(s) 59, 62, 203, 206
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 313
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 3 cut(s) 52, 123, 250
MroNI GCCGGC 1 cut(s) 131
MseI TTAA 1 cut(s) 316
MspI CCGG 2 cut(s) 132, 254
MwoI GCNNNNNNNGC 2 cut(s) 173, 263
NaeI GCCGGC 1 cut(s) 133
NdeII GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 221
PceI AGGCCT 1 cut(s) 239
PdiI GCCGGC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 34, 148, 178
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 225
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 3 cut(s) 33, 147, 177
Sau3AI GATC 7 cut(s) 3, 46, 52, 157, 190, 196, 250
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 188
SetI ASST 8 cut(s) 44, 99, 111, 156, 188, 210, 228, 291
SfaNI GCATC 1 cut(s) 267
Sse9I AATT 1 cut(s) 313
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 1 cut(s) 176
SstI GAGCTC 1 cut(s) 188
StuI AGGCCT 1 cut(s) 239
TaaI ACNGT 2 cut(s) 85, 273
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 275
TasI AATT 1 cut(s) 313
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 32, 146
TspDTI ATGAA 2 cut(s) 62, 206
TspRI CASTG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.