FvH4_4g24721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
26759711 .. 26760467
757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24721.t1

Sequence Viewer

Length: 483 bp
ATGGCGCGCTTCCACCCGAGCGGACACCAGAGGTGTCCCCGATCACTTTCTCTCACTAGCGAGTCCGTCGAATTCCAGTTTTCCGGCGAGATCGATCTTGTCTCAAGTTTTGGGTGGAAGTTGTTGCCCAAACCTTCAAATCGATCTCGCCGGGAAGAGAAAGTGATCGGGGACAACGCTGGAGTCCGCTCGGGTGGAGGCGCGCCATTGTCGGAGCCGTCCGGTGGAGAACGGAGGGACGTCCGCACTTTAAGGGCTGTGCAGACGTCCTCTTTGGAACGGCTCCATGAAGACATCGAAGTCTGGTACGGTGCCAGTGGAGCTGCGGTGTCCATGGCGGTGGAGCACGGTGCAACAACGACTAGAATCGTGATTTGTGAAGGCTGGTCAGCTTGCTCCAATCCATCCTTTTGGATTCGGGCTTCGGTTTGGGCCGGAGGTATGGTGGTCTTGGTGGTGGGTCTGGGCTCTTCTTGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.27

Weight (kDa)

7.8

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AatII GACGTC 2 cut(s) 243, 269
AccB1I GGYRCC 1 cut(s) 311
AccBSI CCGCTC 2 cut(s) 21, 189
AccII CGCG 2 cut(s) 7, 203
AciI CCGC 5 cut(s) 21, 187, 244, 326, 338
AcsI RAATTY 1 cut(s) 71
AcyI GRCGYC 2 cut(s) 240, 266
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 2 cut(s) 323, 392
AluI AGCT 2 cut(s) 323, 392
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 16, 190
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 256, 288
AscI GGCGCGCC 1 cut(s) 201
AspLEI GCGC 4 cut(s) 7, 9, 203, 205
AspS9I GGNCC 2 cut(s) 432, 477
AsuC2I CCSGG 1 cut(s) 152
AvaI CYCGRG 2 cut(s) 16, 190
AvaII GGWCC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 310
BccI CCATC 1 cut(s) 412
BceAI ACGGC 2 cut(s) 202, 296
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 57, 363
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 477
BmeT110I CYCGRG 2 cut(s) 16, 190
BmgT120I GGNCC 2 cut(s) 432, 477
BmiI GGNNCC 3 cut(s) 216, 284, 313
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 152
Bsa29I ATCGAT 2 cut(s) 93, 142
BsaHI GRCGYC 2 cut(s) 240, 266
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 76, 315
BseCI ATCGAT 2 cut(s) 93, 142
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 404
BseLI CCNNNNNNNGG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 76, 315
BsePI GCGCGC 2 cut(s) 5, 201
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 281
Bsh1236I CGCG 2 cut(s) 7, 203
BshFI GGCC 1 cut(s) 434
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 2 cut(s) 93, 142
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 2 cut(s) 16, 190
BsiSI CCGG 4 cut(s) 84, 151, 222, 435
BslFI GGGAC 3 cut(s) 21, 185, 251
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 3 cut(s) 21, 185, 251
BsnI GGCC 1 cut(s) 434
BsoBI CYCGRG 2 cut(s) 16, 190
Bsp1286I GDGCHC 2 cut(s) 348, 470
Bsp143I GATC 5 cut(s) 41, 90, 94, 143, 165
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 5 cut(s) 21, 187, 244, 326, 338
BspANI GGCC 1 cut(s) 434
BspDI ATCGAT 2 cut(s) 93, 142
BspFNI CGCG 2 cut(s) 7, 203
BspLI GGNNCC 3 cut(s) 216, 284, 313
BspQI GCTCTTC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 311
BsrBI CCGCTC 2 cut(s) 21, 189
BsrI ACTGG 2 cut(s) 76, 315
BssECI CCNNGG 1 cut(s) 333
BssHII GCGCGC 2 cut(s) 5, 201
BssMI GATC 5 cut(s) 41, 90, 94, 143, 165
BssNI GRCGYC 2 cut(s) 240, 266
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 311, 350
Bst6I CTCTTC 2 cut(s) 150, 475
BstACI GRCGYC 2 cut(s) 240, 266
BstC8I GCNNGC 3 cut(s) 7, 203, 394
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 404
BstFNI CGCG 2 cut(s) 7, 203
BstHHI GCGC 4 cut(s) 7, 9, 203, 205
BstKTI GATC 5 cut(s) 44, 93, 97, 146, 168
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 5 cut(s) 41, 90, 94, 143, 165
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 2 cut(s) 7, 203
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 340, 411
Bsu15I ATCGAT 2 cut(s) 93, 142
BsuRI GGCC 1 cut(s) 434
BsuTUI ATCGAT 2 cut(s) 93, 142
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 3 cut(s) 7, 203, 394
CfoI GCGC 4 cut(s) 7, 9, 203, 205
Cfr13I GGNCC 2 cut(s) 432, 477
ClaI ATCGAT 2 cut(s) 93, 142
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 287, 334
CviJI RGCY 9 cut(s) 217, 257, 283, 323, 384, 392, 422, 434, 468
CviKI_1 RGCY 9 cut(s) 217, 257, 283, 323, 384, 392, 422, 434, 468
CviQI GTAC 1 cut(s) 307
DpnI GATC 5 cut(s) 43, 92, 96, 145, 167
DpnII GATC 5 cut(s) 41, 90, 94, 143, 165
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 2 cut(s) 150, 475
EarI CTCTTC 2 cut(s) 150, 475
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 16, 190
EcoRI GAATTC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 2 cut(s) 290, 337
FaiI YATR 3 cut(s) 288, 335, 443
FaqI GGGAC 3 cut(s) 21, 185, 251
FatI CATG 2 cut(s) 286, 333
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 57, 363
GlaI GCGC 4 cut(s) 6, 8, 202, 204
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 434
HapII CCGG 4 cut(s) 84, 151, 222, 435
HhaI GCGC 4 cut(s) 7, 9, 203, 205
Hin1I GRCGYC 2 cut(s) 240, 266
Hin1II CATG 2 cut(s) 290, 337
Hin6I GCGC 4 cut(s) 5, 7, 201, 203
HinP1I GCGC 4 cut(s) 5, 7, 201, 203
HinfI GANTC 4 cut(s) 62, 183, 366, 415
HpaII CCGG 4 cut(s) 84, 151, 222, 435
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 370
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 144, 374
HpyCH4III ACNGT 2 cut(s) 311, 350
HpyCH4IV ACGT 2 cut(s) 240, 266
HpyCH4V TGCA 2 cut(s) 262, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpySE526I ACGT 2 cut(s) 240, 266
Hsp92I GRCGYC 2 cut(s) 240, 266
Hsp92II CATG 2 cut(s) 290, 337
HspAI GCGC 4 cut(s) 5, 7, 201, 203
Kzo9I GATC 5 cut(s) 41, 90, 94, 143, 165
LguI GCTCTTC 1 cut(s) 475
LmnI GCTCC 5 cut(s) 214, 288, 320, 343, 401
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 2 cut(s) 57, 363
MaeII ACGT 2 cut(s) 240, 266
MalI GATC 5 cut(s) 43, 92, 96, 145, 167
MbiI CCGCTC 2 cut(s) 21, 189
MboI GATC 5 cut(s) 41, 90, 94, 143, 165
MboII GAAGA 3 cut(s) 167, 302, 462
MhlI GDGCHC 2 cut(s) 348, 470
MluCI AATT 1 cut(s) 71
MlyI GAGTC 2 cut(s) 71, 192
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 24, 191, 228, 280, 431
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 338
MspI CCGG 4 cut(s) 84, 151, 222, 435
MspR9I CCNGG 1 cut(s) 152
MvnI CGCG 2 cut(s) 7, 203
MwoI GCNNNNNNNGC 1 cut(s) 320
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 333
NdeII GATC 5 cut(s) 41, 90, 94, 143, 165
NlaIII CATG 2 cut(s) 290, 337
NlaIV GGNNCC 3 cut(s) 216, 284, 313
PalAI GGCGCGCC 1 cut(s) 201
PauI GCGCGC 2 cut(s) 5, 201
PciSI GCTCTTC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 366, 415
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 2 cut(s) 70, 191
PpsI GAGTC 2 cut(s) 70, 191
PspN4I GGNNCC 3 cut(s) 216, 284, 313
PspPI GGNCC 2 cut(s) 432, 477
PteI GCGCGC 2 cut(s) 5, 201
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 5 cut(s) 41, 90, 94, 143, 165
Sau96I GGNCC 2 cut(s) 432, 477
SchI GAGTC 2 cut(s) 71, 192
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 348, 470
SetI ASST 8 cut(s) 35, 136, 243, 269, 325, 394, 442, 482
SgsI GGCGCGCC 1 cut(s) 201
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 1 cut(s) 71
SsiI CCGC 5 cut(s) 21, 187, 244, 326, 338
SspMI CTAG 2 cut(s) 57, 363
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 311, 350
TaiI ACGT 2 cut(s) 243, 269
TaqI TCGA 4 cut(s) 69, 93, 142, 297
TasI AATT 1 cut(s) 71
TfiI GAWTC 2 cut(s) 366, 415
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 303
TspGWI ACGGA 2 cut(s) 55, 247
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 1 cut(s) 71
XspI CTAG 2 cut(s) 57, 363
ZraI GACGTC 2 cut(s) 241, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.