FvH4_3g20812

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
13900281 .. 13900962
682 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20812.t1

Sequence Viewer

Length: 345 bp
ATGGCGGTAGCCGTGAAATTTGACTTTTCTAAGGCGGTAAGGTTCCGGATTGGGAAACATTTGGTCGGGAGGAAGAAGAAGAAGTCGGTCAAGGAGAAGAAGACGGTGAGAGGAGAAGAAGAAGAAGTTGGTGAAGACGAAGATGGAAGGAGAAGGCGACTGGTTTCAACGGTGGCGGTGCCCTTTTTCCGTCTAGGAGGGAGGGTGTTGATCGTGACAGGCGGTAGTGTGGAGGGCTGCAGATCGGCTGGTTCTGATTTGATCTCCCGCGTGGATCATTGCGGCGGCTTTGGCTGCAGCTTAGAGAGTTTCCTGGGCTGCAGCTTTGTGGCCTTGGTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.35

Weight (kDa)

9.74

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 178
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 7 cut(s) 5, 35, 176, 222, 268, 282, 285
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 17
AgsI TTSAA 1 cut(s) 168
AjnI CCWGG 1 cut(s) 312
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 2 cut(s) 300, 324
AluI AGCT 2 cut(s) 300, 324
AlwI GGATC 1 cut(s) 282
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 5 cut(s) 237, 294, 297, 318, 321
ApoI RAATTY 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 118, 143
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 178
BbsI GAAGAC 2 cut(s) 107, 141
BbvI GCAGC 5 cut(s) 224, 281, 305, 309, 333
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 314
BfaI CTAG 2 cut(s) 194, 343
BfmI CTRYAG 3 cut(s) 238, 295, 319
BisI GCNGC 7 cut(s) 238, 283, 286, 295, 298, 319, 322
BlsI GCNGC 7 cut(s) 239, 284, 287, 296, 299, 320, 323
Bme1390I CCNGG 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 44, 180
BmrFI CCNGG 1 cut(s) 314
BpiI GAAGAC 2 cut(s) 107, 141
BsaJI CCNNGG 2 cut(s) 313, 333
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bse1I ACTGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 277
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 313, 333
BseMI GCAATG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 5 cut(s) 224, 281, 305, 309, 333
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 46
BsnI GGCC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 183
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 4 cut(s) 210, 242, 261, 274
BspACI CCGC 7 cut(s) 5, 35, 176, 222, 268, 282, 285
BspANI GGCC 1 cut(s) 332
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 44, 180
BspMAI CTGCAG 3 cut(s) 242, 299, 323
BspPI GGATC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 313, 333
BssMI GATC 4 cut(s) 210, 242, 261, 274
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 106, 172
BstDEI CTNAG 2 cut(s) 30, 301
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 4 cut(s) 213, 245, 264, 277
BstMBI GATC 4 cut(s) 210, 242, 261, 274
BstMWI GCNNNNNNNGC 2 cut(s) 291, 294
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 3 cut(s) 238, 295, 319
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 5 cut(s) 224, 281, 305, 309, 333
BstV2I GAAGAC 2 cut(s) 107, 141
BsuRI GGCC 1 cut(s) 332
DdeI CTNAG 2 cut(s) 30, 301
DpnI GATC 4 cut(s) 212, 244, 263, 276
DpnII GATC 4 cut(s) 210, 242, 261, 274
Eco130I CCWWGG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 7 cut(s) 238, 283, 286, 295, 298, 319, 322
Fsp4HI GCNGC 7 cut(s) 238, 283, 286, 295, 298, 319, 322
FspBI CTAG 2 cut(s) 194, 343
GluI GCNGC 7 cut(s) 238, 283, 286, 295, 298, 319, 322
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 46
HpaII CCGG 1 cut(s) 46
HphI GGTGA 2 cut(s) 118, 143
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 3 cut(s) 46, 67, 214
HpyAV CCTTC 2 cut(s) 141, 147
HpyCH4III ACNGT 2 cut(s) 106, 172
HpyCH4V TGCA 3 cut(s) 240, 297, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 294
HpyF3I CTNAG 2 cut(s) 30, 301
Kpn2I TCCGGA 1 cut(s) 45
Kzo9I GATC 4 cut(s) 210, 242, 261, 274
LpnPI CCDG 6 cut(s) 59, 146, 204, 234, 299, 326
Lsp1109I GCAGC 5 cut(s) 224, 281, 305, 309, 333
MaeI CTAG 2 cut(s) 194, 343
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 212, 244, 263, 276
MboI GATC 4 cut(s) 210, 242, 261, 274
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 17
MnlI CCTC 5 cut(s) 63, 104, 191, 195, 226
MroI TCCGGA 1 cut(s) 45
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 291, 294
NdeII GATC 4 cut(s) 210, 242, 261, 274
NlaIV GGNNCC 2 cut(s) 44, 180
NmuCI GTSAC 1 cut(s) 214
PkrI GCNGC 7 cut(s) 239, 284, 287, 296, 299, 320, 323
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 44, 180
PstI CTGCAG 3 cut(s) 242, 299, 323
SatI GCNGC 7 cut(s) 238, 283, 286, 295, 298, 319, 322
Sau3AI GATC 4 cut(s) 210, 242, 261, 274
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 183
SetI ASST 3 cut(s) 44, 302, 326
SfcI CTRYAG 3 cut(s) 238, 295, 319
Sse9I AATT 1 cut(s) 17
SsiI CCGC 7 cut(s) 5, 35, 176, 222, 268, 282, 285
SspMI CTAG 2 cut(s) 194, 343
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 106, 172
TaqII GACCGA 1 cut(s) 76
TasI AATT 1 cut(s) 17
TauI GCSGC 2 cut(s) 285, 288
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 5 cut(s) 237, 294, 297, 318, 321
Tsp45I GTSAC 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 179
XapI RAATTY 1 cut(s) 17
XspI CTAG 2 cut(s) 194, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.