RLG00000030343

Ethylene-responsive protein kinase Le-CTR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000118
Physical Location & Seq
Forward (+)
59846288 .. 59846948
661 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030343

Sequence Viewer

Length: 459 bp
ATGGAAGCCCTGATTTCTCTCAAACCTGCGATGCCAAATTGGAAGTCGTTGACGACGGTGCCGGCGCCGGAGCCGAATCGGTCCTCGACGTCTCCTGCCAAAGCCTGGACTTTCCGATCGGTGAGAACTCCGCTGTTCTCGTCGCCAGAGATCGGCGGCTTCGTAAGGCTAGAATGCGTGAGGATCTCGTCGCCGGAGTTGGACGGTTTGCCGCTGCACAAATTCAAAAGGATGAAGGAGCTTGAGCTCTCCATGGTGACATCTCGGTGCTCGGCGGTTCCCATTTTGAGCGAGATCGCCGGACTCAAGCTCCTCCGCACAAAGCTATCGGAAGATGGAGAATGCAAATCAGGAAATAAAGATGTTATCGATTCTGGTTTCCAATCTTTTTCATCACCTTCATCTACTGCAGTAGAGTTAACAGAGGAACACATTTCCAAAGCTTCCGATTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 LRR_8 Pkinase

Protein Analysis

153

Amino Acids

16.6

Weight (kDa)

7.72

Isoelectric Point (pI)

77.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 34
AccB1I GGYRCC 2 cut(s) 58, 64
AccB7I CCANNNNNTGG 1 cut(s) 105
AciI CCGC 5 cut(s) 131, 156, 212, 275, 316
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 2 cut(s) 65, 89
AfiI CCNNNNNNNGG 2 cut(s) 105, 152
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 5 cut(s) 241, 247, 310, 325, 443
AluI AGCT 5 cut(s) 241, 247, 310, 325, 443
Alw21I GWGCWC 2 cut(s) 249, 272
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 133, 268, 387
AvaII GGWCC 1 cut(s) 81
BanI GGYRCC 2 cut(s) 58, 64
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 2 cut(s) 249, 272
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 3 cut(s) 157, 212, 215
BlsI GCNGC 3 cut(s) 158, 213, 216
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 4 cut(s) 60, 66, 72, 279
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 263, 290
Bsa29I ATCGAT 1 cut(s) 369
BsaHI GRCGYC 2 cut(s) 65, 89
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 152
Bse118I RCCGGY 1 cut(s) 61
BseBI CCWGG 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 105, 152
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 119
BshNI GGYRCC 2 cut(s) 58, 64
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 249, 272
BsiSI CCGG 4 cut(s) 62, 68, 194, 300
BslI CCNNNNNNNGG 2 cut(s) 105, 152
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsmI GAATGC 2 cut(s) 179, 347
Bsp1286I GDGCHC 2 cut(s) 249, 272
Bsp143I GATC 4 cut(s) 116, 150, 183, 294
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 5 cut(s) 131, 156, 212, 275, 316
BspDI ATCGAT 1 cut(s) 369
BspLI GGNNCC 4 cut(s) 60, 66, 72, 279
BspMAI CTGCAG 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 58, 64
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 4 cut(s) 116, 150, 183, 294
BssNI GRCGYC 2 cut(s) 65, 89
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 58, 206
BstACI GRCGYC 2 cut(s) 65, 89
BstC8I GCNNGC 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 119, 153, 186, 297
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 4 cut(s) 116, 150, 183, 294
BstMCI CGRYCG 1 cut(s) 119
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 81
ClaI ATCGAT 1 cut(s) 369
CviAII CATG 1 cut(s) 253
DinI GGCGCC 1 cut(s) 66
DpnI GATC 4 cut(s) 118, 152, 185, 296
DpnII GATC 4 cut(s) 116, 150, 183, 294
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 157, 212, 215
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 157, 212, 215
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 157, 212, 215
HaeII RGCGCY 1 cut(s) 68
HapII CCGG 4 cut(s) 62, 68, 194, 300
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 2 cut(s) 65, 89
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 2 cut(s) 51, 420
HindII GTYRAC 2 cut(s) 51, 420
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 4 cut(s) 76, 303, 371, 449
HpaI GTTAAC 1 cut(s) 420
HpaII CCGG 4 cut(s) 62, 68, 194, 300
HphI GGTGA 3 cut(s) 133, 268, 387
Hpy166II GTNNAC 2 cut(s) 51, 420
Hpy188I TCNGA 3 cut(s) 116, 331, 448
Hpy188III TCNNGA 1 cut(s) 351
Hpy8I GTNNAC 2 cut(s) 51, 420
Hpy99I CGWCG 4 cut(s) 58, 91, 145, 193
HpyAV CCTTC 2 cut(s) 229, 408
HpyCH4III ACNGT 2 cut(s) 58, 206
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 217, 345, 410
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 2 cut(s) 65, 89
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 65
KasI GGCGCC 1 cut(s) 64
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
KspAI GTTAAC 1 cut(s) 420
Kzo9I GATC 4 cut(s) 116, 150, 183, 294
LmnI GCTCC 3 cut(s) 70, 238, 315
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 256
MalI GATC 4 cut(s) 118, 152, 185, 296
MboI GATC 4 cut(s) 116, 150, 183, 294
MboII GAAGA 1 cut(s) 344
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 249, 272
MluCI AATT 2 cut(s) 37, 221
Mly113I GGCGCC 1 cut(s) 65
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 94, 174, 323, 418
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 2 cut(s) 419, 457
MslI CAYNNNNRTG 1 cut(s) 265
MspA1I CMGCKG 2 cut(s) 133, 214
MspI CCGG 4 cut(s) 62, 68, 194, 300
MspR9I CCNGG 1 cut(s) 106
Mva1269I GAATGC 2 cut(s) 179, 347
MvaI CCWGG 1 cut(s) 106
NaeI GCCGGC 1 cut(s) 63
NarI GGCGCC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 252
NdeII GATC 4 cut(s) 116, 150, 183, 294
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 4 cut(s) 60, 66, 72, 279
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 2 cut(s) 179, 347
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 76, 371, 449
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 3 cut(s) 158, 213, 216
Ple19I CGATCG 1 cut(s) 119
PleI GAGTC 1 cut(s) 297
PluTI GGCGCC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 4 cut(s) 60, 66, 72, 279
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 183
PvuI CGATCG 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 265
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 419, 457
SatI GCNGC 3 cut(s) 157, 212, 215
Sau3AI GATC 4 cut(s) 116, 150, 183, 294
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 2 cut(s) 249, 272
SetI ASST 8 cut(s) 28, 92, 243, 249, 312, 327, 400, 445
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 408
SfoI GGCGCC 1 cut(s) 66
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 265
SmlI CTYRAG 2 cut(s) 242, 305
SmoI CTYRAG 2 cut(s) 242, 305
Sse9I AATT 2 cut(s) 37, 221
SsiI CCGC 5 cut(s) 131, 156, 212, 275, 316
SspDI GGCGCC 1 cut(s) 64
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 58, 206
TaiI ACGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 86, 369
TaqII GACCGA 1 cut(s) 69
TasI AATT 2 cut(s) 37, 221
TauI GCSGC 2 cut(s) 159, 214
TfiI GAWTC 3 cut(s) 76, 371, 449
Tru1I TTAA 2 cut(s) 419, 457
Tru9I TTAA 2 cut(s) 419, 457
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 248, 381, 390
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 221
XspI CTAG 1 cut(s) 170
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.