FvH4_3g40141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
33941055 .. 33942676
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40141.t1

Sequence Viewer

Length: 477 bp
ATGCCAGCTACATATATACAAGCTGAAGGAAAGATTGATAATTGTGCAGAAGCAGACGTCCCTCCGTTCTCCTCCTTCCGGAGCCGACGACGGCGCCAACGGCGTCCCCGACCACTTTCCCTTCCCGGTGAGATTGATTTGAAGGTCTGGGCAGCAATCTCCACCCAAAACTTCACACAAGATCGATCTCGCTGGAAAACTGGAATTCGGTGGGGAGGAAAAGTGGTCGGGGACGCCACTGGAGTCCGCTTGGGTGGAGGCACGCCGTCGTCGGGGAAGGAGATAAATCAATTGATCAAAGATCATTACGATCAAAAAGGTCAAACCATGTGGGGGTTCAAGATGCCAAAATCGGTCGTAAGCAATCTACGATATCACCACCACACCAGCATCCTCGGCCAACCACCAACCTCAGTCGACCGAGAGTCCGAGACAGTCTCCCTATTGTCGCACCACCCACAACGAACGACGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.76

Weight (kDa)

10.27

Isoelectric Point (pI)

62.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 417
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 4 cut(s) 57, 94, 103, 234
AfiI CCNNNNNNNGG 3 cut(s) 78, 272, 333
AgsI TTSAA 2 cut(s) 142, 340
AhdI GACNNNNNGTC 1 cut(s) 424
AluBI AGCT 2 cut(s) 8, 23
AluI AGCT 2 cut(s) 8, 23
Alw26I GTCTC 2 cut(s) 425, 442
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 140, 368
BanI GGYRCC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 164
BceAI ACGGC 3 cut(s) 107, 116, 250
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 425, 442
BfaI CTAG 1 cut(s) 475
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 126
BmeRI GACNNNNNGTC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 83, 95
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 333, 399
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 184
BsaHI GRCGYC 4 cut(s) 57, 94, 103, 234
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 272, 333
Bse1I ACTGG 2 cut(s) 205, 244
BseAI TCCGGA 1 cut(s) 78
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 78, 272, 333
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 205, 244
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 66
Bsh1285I CGRYCG 2 cut(s) 357, 421
BshFI GGCC 1 cut(s) 399
BshNI GGYRCC 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 184
BsiEI CGRYCG 2 cut(s) 357, 421
BsiSI CCGG 2 cut(s) 79, 126
BslFI GGGAC 3 cut(s) 44, 90, 245
BslI CCNNNNNNNGG 3 cut(s) 78, 272, 333
BsmAI GTCTC 2 cut(s) 425, 442
BsmFI GGGAC 3 cut(s) 44, 90, 245
BsnI GGCC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 5 cut(s) 181, 185, 294, 301, 310
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 425
BspDI ATCGAT 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 83, 95
BspT107I GGYRCC 1 cut(s) 93
BsrI ACTGG 2 cut(s) 205, 244
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 5 cut(s) 181, 185, 294, 301, 310
BssNI GRCGYC 4 cut(s) 57, 94, 103, 234
Bst4CI ACNGT 1 cut(s) 436
BstACI GRCGYC 4 cut(s) 57, 94, 103, 234
BstC8I GCNNGC 2 cut(s) 6, 263
BstDEI CTNAG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 184, 188, 297, 304, 313
BstMAI GTCTC 2 cut(s) 425, 442
BstMBI GATC 5 cut(s) 181, 185, 294, 301, 310
BstMCI CGRYCG 2 cut(s) 357, 421
BstMWI GCNNNNNNNGC 2 cut(s) 100, 396
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 184
BsuRI GGCC 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 184
BtsCI GGATG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 6, 263
CfoI GCGC 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 2 cut(s) 92, 242
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 1 cut(s) 328
CviJI RGCY 4 cut(s) 8, 23, 84, 399
CviKI_1 RGCY 4 cut(s) 8, 23, 84, 399
DdeI CTNAG 1 cut(s) 412
DinI GGCGCC 1 cut(s) 95
DpnI GATC 5 cut(s) 183, 187, 296, 303, 312
DpnII GATC 5 cut(s) 181, 185, 294, 301, 310
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 397
Eam1105I GACNNNNNGTC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 374
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
FaeI CATG 1 cut(s) 331
FaiI YATR 4 cut(s) 13, 15, 17, 329
FaqI GGGAC 3 cut(s) 44, 90, 245
FatI CATG 1 cut(s) 327
FbaI TGATCA 1 cut(s) 294
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 475
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 1 cut(s) 399
HapII CCGG 2 cut(s) 79, 126
HgaI GACGC 2 cut(s) 92, 242
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 4 cut(s) 57, 94, 103, 234
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 243, 425
HpaII CCGG 2 cut(s) 79, 126
HphI GGTGA 2 cut(s) 140, 368
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 2 cut(s) 79, 340
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 5 cut(s) 90, 93, 271, 274, 472
HpyAV CCTTC 5 cut(s) 20, 85, 131, 136, 271
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 396
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 4 cut(s) 57, 94, 103, 234
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 94
KasI GGCGCC 1 cut(s) 93
Kpn2I TCCGGA 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 5 cut(s) 181, 185, 294, 301, 310
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 8 cut(s) 18, 92, 133, 139, 178, 186, 225, 400
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 2 cut(s) 333, 399
MaeI CTAG 1 cut(s) 475
MaeII ACGT 1 cut(s) 57
MalI GATC 5 cut(s) 183, 187, 296, 303, 312
MboI GATC 5 cut(s) 181, 185, 294, 301, 310
MfeI CAATTG 1 cut(s) 290
MluCI AATT 3 cut(s) 40, 204, 290
Mly113I GGCGCC 1 cut(s) 94
MlyI GAGTC 2 cut(s) 252, 434
MnlI CCTC 6 cut(s) 72, 82, 209, 251, 404, 421
MroI TCCGGA 1 cut(s) 78
MspI CCGG 2 cut(s) 79, 126
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 100, 396
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 1 cut(s) 126
NdeII GATC 5 cut(s) 181, 185, 294, 301, 310
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 2 cut(s) 83, 95
NmeAIII GCCGAG 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 251, 433
PluTI GGCGCC 1 cut(s) 97
PpsI GAGTC 2 cut(s) 251, 433
PspN4I GGNNCC 2 cut(s) 83, 95
SalI GTCGAC 1 cut(s) 416
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 5 cut(s) 181, 185, 294, 301, 310
SchI GAGTC 2 cut(s) 252, 434
ScrFI CCNGG 1 cut(s) 126
SetI ASST 7 cut(s) 10, 25, 60, 147, 322, 413, 476
SfaNI GCATC 2 cut(s) 333, 399
SfoI GGCGCC 1 cut(s) 95
Sse9I AATT 3 cut(s) 40, 204, 290
SsiI CCGC 1 cut(s) 247
SspDI GGCGCC 1 cut(s) 93
SspMI CTAG 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 184, 417
TaqII GACCGA 2 cut(s) 343, 435
TasI AATT 3 cut(s) 40, 204, 290
TscAI CASTG 1 cut(s) 244
TseI GCWGC 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 1 cut(s) 475
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.