FvH4_6g40582

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
32058003 .. 32058464
462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40582.t1

Sequence Viewer

Length: 291 bp
ATGAGCAAACTGATCCAGGCTAGAGGAGTAATCCAACCCAGGCCACACACGTGGCTGACGTCAGCGGCTTGCCTCCCTTTCTTCGACGCCGGAGGAGGCCTGGTGCACTCGCTGCTGGGGTGGCGCAAGGTAGAGGGGCTGCTTGCTGCTGTGCGTGCGGAGGAGGCTGGGCATGCGGAGCGGCTGGGCATGCGGATGAGGCTGGAGTTGCACTGCTCACCGTTGGAAGGTGGGTGCTCGCCGTCGGCAGCCCAGAGTAGAATCGATTGGGTGCCCAGAGCAGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.46

Weight (kDa)

8.66

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 271
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 5 cut(s) 65, 158, 176, 181, 193
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 284
AcvI CACGTG 1 cut(s) 51
AcyI GRCGYC 2 cut(s) 59, 87
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 48
AjnI CCWGG 3 cut(s) 15, 38, 99
AleI CACNNNNGTG 1 cut(s) 49
Alw21I GWGCWC 2 cut(s) 108, 239
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 1 cut(s) 7
AoxI GGCC 2 cut(s) 41, 97
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 4 cut(s) 112, 139, 146, 248
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 210
BaeGI GKGCMC 2 cut(s) 108, 276
BanI GGYRCC 1 cut(s) 271
BbrPI CACGTG 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 108, 239
BbvI GCAGC 4 cut(s) 99, 126, 133, 260
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 3 cut(s) 17, 40, 101
BfaI CTAG 1 cut(s) 21
BisI GCNGC 6 cut(s) 66, 113, 140, 147, 182, 249
BlsI GCNGC 6 cut(s) 67, 114, 141, 148, 183, 250
Bme1390I CCNGG 3 cut(s) 17, 40, 101
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 3 cut(s) 17, 40, 101
BpmI CTGGAG 1 cut(s) 224
Bsa29I ATCGAT 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 59, 87
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 227
BseBI CCWGG 3 cut(s) 17, 40, 101
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 227
BseRI GAGGAG 3 cut(s) 39, 108, 176
BseSI GKGCMC 2 cut(s) 108, 276
BseXI GCAGC 4 cut(s) 99, 126, 133, 260
BseYI CCCAGC 3 cut(s) 115, 167, 184
BshFI GGCC 2 cut(s) 43, 99
BshNI GGYRCC 1 cut(s) 271
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 108, 239
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 2 cut(s) 43, 99
Bsp1286I GDGCHC 3 cut(s) 108, 239, 276
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 5 cut(s) 65, 158, 176, 181, 193
BspANI GGCC 2 cut(s) 43, 99
BspDI ATCGAT 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 12
BssNI GRCGYC 2 cut(s) 59, 87
Bst2UI CCWGG 3 cut(s) 17, 40, 101
Bst4CI ACNGT 1 cut(s) 222
BstACI GRCGYC 2 cut(s) 59, 87
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 6 cut(s) 70, 144, 156, 174, 191, 239
BstF5I GGATG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 9 cut(s) 112, 121, 155, 164, 173, 178, 190, 199, 208
BstNI CCWGG 3 cut(s) 17, 40, 101
BstNSI RCATGY 2 cut(s) 176, 193
BstSCI CCNGG 3 cut(s) 15, 38, 99
BstSLI GKGCMC 2 cut(s) 108, 276
BstV1I GCAGC 4 cut(s) 99, 126, 133, 260
BstXI CCANNNNNNTGG 1 cut(s) 51
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 2 cut(s) 43, 99
BsuTUI ATCGAT 1 cut(s) 264
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 6 cut(s) 70, 144, 156, 174, 191, 239
CfoI GCGC 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 1 cut(s) 95
CviAII CATG 2 cut(s) 173, 190
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 99
Eco72I CACGTG 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 15, 38, 99
FaeI CATG 2 cut(s) 176, 193
FaiI YATR 2 cut(s) 174, 191
FatI CATG 2 cut(s) 172, 189
Fnu4HI GCNGC 6 cut(s) 66, 113, 140, 147, 182, 249
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 6 cut(s) 66, 113, 140, 147, 182, 249
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 125
GluI GCNGC 6 cut(s) 66, 113, 140, 147, 182, 249
GsaI CCCAGC 3 cut(s) 119, 171, 188
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 43, 99
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 2 cut(s) 59, 87
Hin1II CATG 2 cut(s) 176, 193
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 1 cut(s) 261
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 89, 247
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 2 cut(s) 50, 59
HpyCH4V TGCA 2 cut(s) 106, 211
HpyF10VI GCNNNNNNNGC 9 cut(s) 112, 121, 155, 164, 173, 178, 190, 199, 208
HpySE526I ACGT 2 cut(s) 50, 59
Hsp92I GRCGYC 2 cut(s) 59, 87
Hsp92II CATG 2 cut(s) 176, 193
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 4 cut(s) 99, 126, 133, 260
MaeI CTAG 1 cut(s) 21
MaeII ACGT 2 cut(s) 50, 59
MalI GATC 1 cut(s) 14
MbiI CCGCTC 1 cut(s) 181
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 108, 239, 276
MluCI AATT 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 58, 204
MnlI CCTC 8 cut(s) 17, 83, 86, 89, 127, 154, 157, 192
MslI CAYNNNNRTG 2 cut(s) 49, 194
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 3 cut(s) 17, 40, 101
MvaI CCWGG 3 cut(s) 17, 40, 101
MwoI GCNNNNNNNGC 9 cut(s) 112, 121, 155, 164, 173, 178, 190, 199, 208
NdeII GATC 1 cut(s) 12
NlaIII CATG 2 cut(s) 176, 193
NlaIV GGNNCC 1 cut(s) 273
NspI RCATGY 2 cut(s) 176, 193
OliI CACNNNNGTG 1 cut(s) 49
PaeI GCATGC 2 cut(s) 176, 193
PceI AGGCCT 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 6 cut(s) 67, 114, 141, 148, 183, 250
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 15, 38, 99
PspCI CACGTG 1 cut(s) 51
PspFI CCCAGC 3 cut(s) 115, 167, 184
PspGI CCWGG 3 cut(s) 15, 38, 99
PspN4I GGNNCC 1 cut(s) 273
RseI CAYNNNNRTG 2 cut(s) 49, 194
SatI GCNGC 6 cut(s) 66, 113, 140, 147, 182, 249
Sau3AI GATC 1 cut(s) 12
ScrFI CCNGG 3 cut(s) 17, 40, 101
SduI GDGCHC 3 cut(s) 108, 239, 276
SetI ASST 4 cut(s) 53, 62, 132, 232
SmiMI CAYNNNNRTG 2 cut(s) 49, 194
SphI GCATGC 2 cut(s) 176, 193
Sse9I AATT 1 cut(s) 284
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 5 cut(s) 65, 158, 176, 181, 193
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 15, 38, 99
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 2 cut(s) 53, 62
TaqI TCGA 2 cut(s) 84, 264
TasI AATT 1 cut(s) 284
TauI GCSGC 2 cut(s) 68, 184
TfiI GAWTC 1 cut(s) 261
TscAI CASTG 1 cut(s) 218
TseI GCWGC 4 cut(s) 112, 139, 146, 248
TspRI CASTG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 104
XapI RAATTY 1 cut(s) 284
XceI RCATGY 2 cut(s) 176, 193
XspI CTAG 1 cut(s) 21
ZraI GACGTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.