FvH4_6g00153

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
131669 .. 131989
321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00153.t1

Sequence Viewer

Length: 321 bp
ATGTGGAGCACGTACTGGCTTAAAGTGCGCATGTCCCTCTGTTCGCCACCGTCTGCCGCCGCCGACGATGCGCCTCCACCCCCAGCGGACTCCAGCAGCGTCCCTGATCACTTTCCCTCCCCGGTGAGTCCGCCGAATTGCAGTTTCCAGCGACATCGACTTTATTTGAAGTTTTGGGTGATTTCGCCGGAAAACTGGAATTCGGCTGACTCGCCGGGAATGGAAAGTGATCGGGGACACTGCTGGAGTCCGCTGGGGTGGAGACGCGCCGTCGTCGGCGCCAGACGGTGGCGAACGGAGGGACGTGCGCACTCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.97

Weight (kDa)

9.05

Isoelectric Point (pI)

83.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 29, 309
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 288
AccII CGCG 1 cut(s) 267
AciI CCGC 5 cut(s) 57, 60, 86, 131, 251
AcsI RAATTY 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 1 cut(s) 169
AhdI GACNNNNNGTC 1 cut(s) 269
AjiI CACGTC 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 199
AspLEI GCGC 5 cut(s) 30, 73, 269, 281, 310
AsuC2I CCSGG 2 cut(s) 122, 216
AsuHPI GGTGA 2 cut(s) 136, 190
BanI GGYRCC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 254
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 2 cut(s) 122, 216
BcoDI GTCTC 1 cut(s) 256
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 3 cut(s) 57, 60, 97
BlsI GCNGC 3 cut(s) 58, 61, 98
Bme1390I CCNGG 2 cut(s) 122, 216
BmeRI GACNNNNNGTC 1 cut(s) 269
BmgBI CACGTC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 2 cut(s) 122, 216
BmsI GCATC 1 cut(s) 58
BpmI CTGGAG 2 cut(s) 76, 265
BpuMI CCSGG 2 cut(s) 122, 216
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 2 cut(s) 20, 200
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 20, 200
BseXI GCAGC 1 cut(s) 108
BseYI CCCAGC 2 cut(s) 82, 253
Bsh1236I CGCG 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 3 cut(s) 122, 188, 215
BslFI GGGAC 4 cut(s) 19, 86, 249, 315
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 4 cut(s) 19, 86, 249, 315
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 106, 229
BspACI CCGC 5 cut(s) 57, 60, 86, 131, 251
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 278
BsrI ACTGG 2 cut(s) 20, 200
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 106, 229
BssNI GRCGYC 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 51, 288
BstACI GRCGYC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 12
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 5 cut(s) 30, 73, 269, 281, 310
BstKTI GATC 2 cut(s) 109, 232
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 106, 229
BstMWI GCNNNNNNNGC 2 cut(s) 25, 68
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 120, 214
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
CfoI GCGC 5 cut(s) 30, 73, 269, 281, 310
CseI GACGC 2 cut(s) 88, 273
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 19, 206
CviKI_1 RGCY 2 cut(s) 19, 206
CviQI GTAC 1 cut(s) 13
DinI GGCGCC 1 cut(s) 280
DpnI GATC 2 cut(s) 108, 231
DpnII GATC 2 cut(s) 106, 229
DriI GACNNNNNGTC 1 cut(s) 269
Eam1105I GACNNNNNGTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 199
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FaqI GGGAC 4 cut(s) 19, 86, 249, 315
FatI CATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 57, 60, 97
Fsp4HI GCNGC 3 cut(s) 57, 60, 97
FspAI RTGCGCAY 2 cut(s) 29, 309
FspI TGCGCA 2 cut(s) 29, 309
GlaI GCGC 5 cut(s) 29, 72, 268, 280, 309
GluI GCNGC 3 cut(s) 57, 60, 97
GsaI CCCAGC 2 cut(s) 86, 257
GsuI CTGGAG 2 cut(s) 76, 265
HaeII RGCGCY 1 cut(s) 282
HapII CCGG 3 cut(s) 122, 188, 215
HgaI GACGC 2 cut(s) 88, 273
HhaI GCGC 5 cut(s) 30, 73, 269, 281, 310
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 5 cut(s) 28, 71, 267, 279, 308
HinP1I GCGC 5 cut(s) 28, 71, 267, 279, 308
HinfI GANTC 4 cut(s) 89, 127, 209, 247
HpaII CCGG 3 cut(s) 122, 188, 215
HphI GGTGA 2 cut(s) 136, 190
Hpy99I CGWCG 3 cut(s) 68, 275, 278
HpyCH4III ACNGT 2 cut(s) 51, 288
HpyCH4IV ACGT 2 cut(s) 11, 304
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 68
HpySE526I ACGT 2 cut(s) 11, 304
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 5 cut(s) 28, 71, 267, 279, 308
KasI GGCGCC 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 229
LmnI GCTCC 1 cut(s) 6
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 1 cut(s) 58
MaeII ACGT 2 cut(s) 11, 304
MalI GATC 2 cut(s) 108, 231
MboI GATC 2 cut(s) 106, 229
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 2 cut(s) 136, 199
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 4 cut(s) 83, 136, 203, 256
MnlI CCTC 4 cut(s) 47, 84, 127, 292
MseI TTAA 2 cut(s) 21, 319
MspA1I CMGCKG 2 cut(s) 86, 253
MspI CCGG 3 cut(s) 122, 188, 215
MspR9I CCNGG 2 cut(s) 122, 216
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 25, 68
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 2 cut(s) 122, 216
NdeII GATC 2 cut(s) 106, 229
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 280
NsbI TGCGCA 2 cut(s) 29, 309
NspI RCATGY 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 3 cut(s) 58, 61, 98
PleI GAGTC 4 cut(s) 83, 135, 203, 255
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 4 cut(s) 83, 135, 203, 255
Ppu21I YACGTR 1 cut(s) 12
PspFI CCCAGC 2 cut(s) 82, 253
PspN4I GGNNCC 1 cut(s) 280
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 21, 319
SatI GCNGC 3 cut(s) 57, 60, 97
Sau3AI GATC 2 cut(s) 106, 229
SchI GAGTC 4 cut(s) 83, 136, 203, 256
ScrFI CCNGG 2 cut(s) 122, 216
SduI GDGCHC 1 cut(s) 11
SetI ASST 2 cut(s) 14, 307
SfaNI GCATC 1 cut(s) 58
SfoI GGCGCC 1 cut(s) 280
Sse9I AATT 2 cut(s) 136, 199
SsiI CCGC 5 cut(s) 57, 60, 86, 131, 251
SspDI GGCGCC 1 cut(s) 278
StyD4I CCNGG 2 cut(s) 120, 214
TaaI ACNGT 2 cut(s) 51, 288
TaiI ACGT 2 cut(s) 14, 307
TaqI TCGA 1 cut(s) 157
TasI AATT 2 cut(s) 136, 199
TauI GCSGC 2 cut(s) 59, 62
Tru1I TTAA 2 cut(s) 21, 319
Tru9I TTAA 2 cut(s) 21, 319
TscAI CASTG 1 cut(s) 245
TseI GCWGC 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 288
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.