FvH4_5g28291

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Reverse (-)
19457661 .. 19459553
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28291.t1

Sequence Viewer

Length: 1749 bp
ATGGATCTTGCAGCCTTGGCTAAAACAATTGAAGGCTTAGCCGCTCAAATTGGTCATCTTGAGACCAGAATACAGGATCAAGCAGTTGCTTCTGAGCAACGTTTGGCTGCAATTGAAGCTTCTATCCAGAACGAAGAAGAGAGTGTTGGTGGAGGATCAAGGATGCAGTCTAGGAGGAATGGTCGCAGGCAGGCTGTTCGAAACAACAATGGGCAAGATGGACATGATCCTGAGGAAAAAGCACTGAAGAGTATCAAAGTTGAAGCTCCAAACTTTGATGGCCAGCTGAATGCGAAGGTGTGTCTAGATTGGATATCAGACATGGACCACTATTTTGACTGGTACGAGTTGTCTGAAACTCGAAGGGTGCGGTTTGCAAAGATGAAGTTGGTGGGCAAAGCTAGAGAATGGTGGAGTGGTGTGGAAAGGCGAGCTGCAAGAGCCGGTGATGAACCTATCACTCATTGGGAGGAGATGAAAGAAAGGCTGAAGGAGAAGTACGTTCCTTTGGCTTACAAAGAGCGCTTGCTGGACCAGTGGCAATCTCTTCGTCAAGGGAACATGACAGTTGCTGAGTATATTGATAAGTTTGAAGAATTTATGGTGAGATGCAACATAAATGAAGATCCTTCTGTGACACTCGCTCGTTTCAGAACCGGCCTTCGTCCAGAACTTCAGAGGGAGCTGATCCCTCATGAAGTATATTCATTGGAGCGAGCATACCAAATAGTGCTGGAATTGGAGCGCTACTTGAAGACTTCTACAACTGTGCATAGCCGATCTGACCAGGAAAATCCTGAATTTCGTCCCAGCTCATCGGGAACAGCACCATCTCCATTCGTCAATAGCTCCAGTACTGCCAATTCATTGGTGAAAGCTGATACAGGAAAGGGAGTACAATCTGGTGTTCGAGGAGGGGGATCTGTAAAGTGCTACAAGTGTCTAGGCCATGGTCACTATGCTGGCCAATGCCCAACCAAAGAGAAACCTCGTAGTCTGTTTGCAGCAAGCACAGGAAAAGAGGCTCGAGAGGAATTGGAGGAAGAAGTTTATATCCCTGAAATTCCTGCCGTTGATGATGACTTGGAGGATGAACCTATTGCCCAAATTCAACCAAGAACGGCGGTGGTAAGGTGCACTTTGACTCAACTCGAAGCGGCTGAGGATTGGAAGAGGACCAGCATCTTTCACACTTATGTGAAGTATGGAGACAGAAGTTATAAGGTTCCTATTCAATTCTCATCATACAAGGATACTGTTTGGTGTGATGTGGTGCCAATGGACGTGGGACACATTCTTTTGGGCAGACCATGGTTGTATGATCTAGATGTGACCATTTCTGGCCGTTCCAACTCGTGCTCCTTTATTCATGAAGGAAAGCACATCAAGCTGAATCCTATCCAGCCAAAACCGGTACTCCAACTACCTTGCAAGGGAGGGCAGCAGGCAAAATCGCTTAACATCATCGTTCCAAGAGATGTGGTAGAAAACATTGTGGATGAGCAGGTGGTTTCAACAAGACAAGGAGGCTACCAGAAGTATTCAATTAAATGGAAAGAAAAACCCGACTCTGACAAGGAGGAGCTGCAGCACACCAATCCAGATATCTTGGAAAGATACTACAGTTTTATCTCGCCGGAGGCGAGCTCTTCTCAGCCGGGGAGAATTGACGAGGACATCATAGTCAAACCTTTCAAGGTTTATGAGCGAAACAAATGGAAGGAGAAAGCACCTAATCATTCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

583

Amino Acids

66.33

Weight (kDa)

6.23

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 87 - 256 4.6e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 125 - 223 2e-20 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1221
AarI CACCTGC 1 cut(s) 1495
AasI GACNNNNNNGTC 1 cut(s) 1682
Acc36I ACCTGC 1 cut(s) 1495
AccB1I GGYRCC 1 cut(s) 1273
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 4 cut(s) 42, 370, 1124, 1157
AclI AACGTT 1 cut(s) 100
AclWI GGATC 7 cut(s) 12, 84, 163, 221, 620, 682, 928
AcoI YGGCCR 3 cut(s) 280, 964, 1342
AcsI RAATTY 4 cut(s) 596, 800, 1062, 1107
AcuI CTGAAG 3 cut(s) 266, 509, 659
AfaI GTAC 5 cut(s) 344, 500, 856, 897, 1416
AfeI AGCGCT 2 cut(s) 524, 746
AfiI CCNNNNNNNGG 1 cut(s) 1433
AgeI ACCGGT 1 cut(s) 1411
AjiI CACGTC 1 cut(s) 1285
AjnI CCWGG 1 cut(s) 786
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AleI CACNNNNGTG 1 cut(s) 1196
Alw21I GWGCWC 3 cut(s) 1139, 1361, 1649
Alw26I GTCTC 2 cut(s) 56, 1203
Alw44I GTGCAC 1 cut(s) 1135
AlwI GGATC 7 cut(s) 12, 84, 163, 221, 620, 682, 928
AlwNI CAGNNNCTG 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 1026
Aor51HI AGCGCT 2 cut(s) 524, 746
AoxI GGCC 5 cut(s) 280, 658, 946, 964, 1342
ApaLI GTGCAC 1 cut(s) 1135
ApeKI GCWGC 7 cut(s) 11, 107, 434, 1004, 1441, 1585, 1588
ApoI RAATTY 4 cut(s) 596, 800, 1062, 1107
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AsiGI ACCGGT 1 cut(s) 1411
AspLEI GCGC 2 cut(s) 525, 747
AspS9I GGNCC 3 cut(s) 325, 532, 1176
AsuC2I CCSGG 1 cut(s) 1659
AsuHPI GGTGA 3 cut(s) 458, 616, 883
AsuII TTCGAA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 1026
AvaII GGWCC 3 cut(s) 325, 532, 1176
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 1139
BaeI ACNNNNGTAYC 2 cut(s) 1609, 1642
BalI TGGCCA 2 cut(s) 282, 966
BanI GGYRCC 1 cut(s) 1273
BanII GRGCYC 1 cut(s) 1649
BarI GAAGNNNNNNTAC 2 cut(s) 482, 514
BauI CACGAG 1 cut(s) 1354
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 3 cut(s) 1139, 1361, 1649
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 7 cut(s) 23, 94, 421, 1016, 1453, 1572, 1600
BccI CCATC 3 cut(s) 212, 272, 838
BceAI ACGGC 3 cut(s) 1055, 1137, 1329
BcgI CGANNNNNNTGC 4 cut(s) 179, 213, 530, 564
BciT130I CCWGG 1 cut(s) 788
BciVI GTATCC 1 cut(s) 1246
BcnI CCSGG 1 cut(s) 1659
BcoDI GTCTC 2 cut(s) 56, 1203
BfaI CTAG 5 cut(s) 171, 305, 402, 944, 1325
BfmI CTRYAG 2 cut(s) 1586, 1621
BfoI RGCGCY 2 cut(s) 526, 748
BfuAI ACCTGC 1 cut(s) 1495
BfuI GTATCC 1 cut(s) 1246
BisI GCNGC 9 cut(s) 12, 42, 108, 435, 1005, 1158, 1442, 1586, 1589
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 9 cut(s) 13, 43, 109, 436, 1006, 1159, 1443, 1587, 1590
BmcAI AGTACT 1 cut(s) 856
Bme1390I CCNGG 2 cut(s) 788, 1659
Bme18I GGWCC 3 cut(s) 325, 532, 1176
BmeT110I CYCGRG 1 cut(s) 1026
BmgBI CACGTC 1 cut(s) 1285
BmgT120I GGNCC 3 cut(s) 325, 532, 1176
BmiI GGNNCC 2 cut(s) 1227, 1275
BmrFI CCNGG 2 cut(s) 788, 1659
BmsI GCATC 3 cut(s) 153, 599, 1191
BpiI GAAGAC 1 cut(s) 761
BplI GAGNNNNNCTC 4 cut(s) 1631, 1663, 1636, 1668
BpmI CTGGAG 1 cut(s) 835
Bpu10I CCTNAGC 1 cut(s) 1161
Bpu1102I GCTNAGC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 1659
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 4 cut(s) 15, 949, 1310, 1658
BsaWI WCCGGW 1 cut(s) 1411
BsaXI ACNNNNNCTCC 6 cut(s) 166, 196, 1343, 1373, 1401, 1431
Bsc4I CCNNNNNNNGG 1 cut(s) 1433
Bse118I RCCGGY 3 cut(s) 443, 656, 1411
Bse1I ACTGG 3 cut(s) 344, 535, 852
Bse21I CCTNAGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 4 cut(s) 15, 949, 1310, 1658
BseGI GGATG 3 cut(s) 168, 1096, 1504
BseLI CCNNNNNNNGG 1 cut(s) 1433
BseMII CTCAG 5 cut(s) 84, 222, 564, 1152, 1667
BseNI ACTGG 3 cut(s) 344, 535, 852
BseRI GAGGAG 3 cut(s) 485, 927, 1595
BseSI GKGCMC 1 cut(s) 1139
BseXI GCAGC 7 cut(s) 23, 94, 421, 1016, 1453, 1572, 1600
BseYI CCCAGC 1 cut(s) 809
BshFI GGCC 5 cut(s) 282, 660, 948, 966, 1344
BshNI GGYRCC 1 cut(s) 1273
BshTI ACCGGT 1 cut(s) 1411
BsiHKAI GWGCWC 3 cut(s) 1139, 1361, 1649
BsiHKCI CYCGRG 1 cut(s) 1026
BsiSI CCGG 5 cut(s) 444, 657, 1412, 1637, 1658
BslFI GGGAC 2 cut(s) 792, 1302
BslI CCNNNNNNNGG 1 cut(s) 1433
BsmAI GTCTC 2 cut(s) 56, 1203
BsmFI GGGAC 2 cut(s) 792, 1302
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 5 cut(s) 282, 660, 948, 966, 1344
Bso31I GGTCTC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 1026
Bsp119I TTCGAA 1 cut(s) 199
Bsp1286I GDGCHC 3 cut(s) 1139, 1361, 1649
Bsp143I GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
Bsp1720I GCTNAGC 1 cut(s) 37
Bsp19I CCATGG 2 cut(s) 949, 1310
BspACI CCGC 4 cut(s) 42, 370, 1124, 1157
BspANI GGCC 5 cut(s) 282, 660, 948, 966, 1344
BspCNI CTCAG 5 cut(s) 85, 223, 565, 1153, 1666
BspHI TCATGA 2 cut(s) 694, 1369
BspLI GGNNCC 2 cut(s) 1227, 1275
BspMAI CTGCAG 1 cut(s) 1590
BspMI ACCTGC 1 cut(s) 1495
BspPI GGATC 7 cut(s) 12, 84, 163, 221, 620, 682, 928
BspQI GCTCTTC 1 cut(s) 1654
BspT104I TTCGAA 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 1273
BspTNI GGTCTC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 44
BsrFI RCCGGY 3 cut(s) 443, 656, 1411
BsrI ACTGG 3 cut(s) 344, 535, 852
BssAI RCCGGY 3 cut(s) 443, 656, 1411
BssECI CCNNGG 4 cut(s) 15, 949, 1310, 1658
BssMI GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
BssSI CACGAG 1 cut(s) 1354
BssT1I CCWWGG 3 cut(s) 15, 949, 1310
Bst2BI CACGAG 1 cut(s) 1354
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 4 cut(s) 568, 769, 1258, 1625
Bst6I CTCTTC 5 cut(s) 132, 242, 552, 1166, 1654
BstBI TTCGAA 1 cut(s) 199
BstDEI CTNAG 6 cut(s) 37, 93, 231, 573, 1161, 1653
BstDSI CCRYGG 2 cut(s) 949, 1310
BstF5I GGATG 3 cut(s) 168, 1096, 1504
BstH2I RGCGCY 2 cut(s) 526, 748
BstHHI GCGC 2 cut(s) 525, 747
BstKTI GATC 9 cut(s) 7, 79, 158, 229, 628, 690, 782, 923, 1324
BstMAI GTCTC 2 cut(s) 56, 1203
BstMBI GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
BstMWI GCNNNNNNNGC 4 cut(s) 17, 116, 440, 1387
BstNI CCWGG 1 cut(s) 788
BstSCI CCNGG 2 cut(s) 786, 1657
BstSFI CTRYAG 2 cut(s) 1586, 1621
BstSLI GKGCMC 1 cut(s) 1139
BstV1I GCAGC 7 cut(s) 23, 94, 421, 1016, 1453, 1572, 1600
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 3 cut(s) 4, 625, 920
BstXI CCANNNNNNTGG 1 cut(s) 868
BstYI RGATCY 3 cut(s) 4, 625, 920
Bsu36I CCTNAGG 1 cut(s) 231
BsuI GTATCC 1 cut(s) 1246
BsuRI GGCC 5 cut(s) 282, 660, 948, 966, 1344
BtgI CCRYGG 2 cut(s) 949, 1310
BtrI CACGTC 1 cut(s) 1285
BtsCI GGATG 3 cut(s) 168, 1096, 1504
BtsIMutI CAGTG 2 cut(s) 242, 542
BveI ACCTGC 1 cut(s) 1495
CaiI CAGNNNCTG 1 cut(s) 572
CciI TCATGA 2 cut(s) 694, 1369
CfoI GCGC 2 cut(s) 525, 747
Cfr10I RCCGGY 3 cut(s) 443, 656, 1411
Cfr13I GGNCC 3 cut(s) 325, 532, 1176
Csp6I GTAC 5 cut(s) 343, 499, 855, 896, 1415
CspAI ACCGGT 1 cut(s) 1411
CspCI CAANNNNNGTGG 4 cut(s) 1266, 1301, 1461, 1496
CviAII CATG 7 cut(s) 224, 322, 562, 695, 950, 1311, 1370
CviQI GTAC 5 cut(s) 343, 499, 855, 896, 1415
DdeI CTNAG 6 cut(s) 37, 93, 231, 573, 1161, 1653
DpnI GATC 9 cut(s) 6, 78, 157, 228, 627, 689, 781, 922, 1323
DpnII GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
DrdI GACNNNNNNGTC 1 cut(s) 1682
DseDI GACNNNNNNGTC 1 cut(s) 1682
EaeI YGGCCR 3 cut(s) 280, 964, 1342
Eam1104I CTCTTC 5 cut(s) 132, 242, 552, 1166, 1654
EarI CTCTTC 5 cut(s) 132, 242, 552, 1166, 1654
Ecl136II GAGCTC 1 cut(s) 1647
Eco130I CCWWGG 3 cut(s) 15, 949, 1310
Eco24I GRGCYC 1 cut(s) 1649
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 2 cut(s) 315, 1606
Eco47I GGWCC 3 cut(s) 325, 532, 1176
Eco47III AGCGCT 2 cut(s) 524, 746
Eco53kI GAGCTC 1 cut(s) 1647
Eco57I CTGAAG 3 cut(s) 266, 509, 659
Eco81I CCTNAGG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 1026
EcoICRI GAGCTC 1 cut(s) 1647
EcoRII CCWGG 1 cut(s) 786
EcoRV GATATC 2 cut(s) 315, 1606
EcoT14I CCWWGG 3 cut(s) 15, 949, 1310
EcoT38I GRGCYC 1 cut(s) 1649
ErhI CCWWGG 3 cut(s) 15, 949, 1310
FaeI CATG 7 cut(s) 227, 325, 565, 698, 953, 1314, 1373
FalI AAGNNNNNCTT 2 cut(s) 1123, 1155
FaqI GGGAC 2 cut(s) 792, 1302
FatI CATG 7 cut(s) 223, 321, 561, 694, 949, 1310, 1369
Fnu4HI GCNGC 9 cut(s) 12, 42, 108, 435, 1005, 1158, 1442, 1586, 1589
FokI GGATG 3 cut(s) 175, 1103, 1511
FriOI GRGCYC 1 cut(s) 1649
Fsp4HI GCNGC 9 cut(s) 12, 42, 108, 435, 1005, 1158, 1442, 1586, 1589
FspBI CTAG 5 cut(s) 171, 305, 402, 944, 1325
GlaI GCGC 2 cut(s) 524, 746
GluI GCNGC 9 cut(s) 12, 42, 108, 435, 1005, 1158, 1442, 1586, 1589
GsaI CCCAGC 1 cut(s) 813
GsuI CTGGAG 1 cut(s) 835
HaeII RGCGCY 2 cut(s) 526, 748
HaeIII GGCC 5 cut(s) 282, 660, 948, 966, 1344
HapII CCGG 5 cut(s) 444, 657, 1412, 1637, 1658
HhaI GCGC 2 cut(s) 525, 747
Hin1II CATG 7 cut(s) 227, 325, 565, 698, 953, 1314, 1373
Hin6I GCGC 2 cut(s) 523, 745
HinP1I GCGC 2 cut(s) 523, 745
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 3 cut(s) 1144, 1393, 1568
HpaII CCGG 5 cut(s) 444, 657, 1412, 1637, 1658
HphI GGTGA 3 cut(s) 458, 616, 883
Hpy166II GTNNAC 1 cut(s) 1137
Hpy188I TCNGA 7 cut(s) 94, 319, 355, 653, 678, 784, 1573
Hpy8I GTNNAC 1 cut(s) 1137
HpyAV CCTTC 8 cut(s) 26, 289, 357, 484, 639, 671, 1367, 1714
HpyCH4III ACNGT 4 cut(s) 568, 769, 1258, 1625
HpyCH4IV ACGT 3 cut(s) 100, 501, 1284
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 116, 440, 1387
HpyF3I CTNAG 6 cut(s) 37, 93, 231, 573, 1161, 1653
HpySE526I ACGT 3 cut(s) 100, 501, 1284
Hsp92II CATG 7 cut(s) 227, 325, 565, 698, 953, 1314, 1373
HspAI GCGC 2 cut(s) 523, 745
Kzo9I GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
LguI GCTCTTC 1 cut(s) 1654
LmnI GCTCC 7 cut(s) 271, 682, 712, 742, 854, 1364, 1582
Lsp1109I GCAGC 7 cut(s) 23, 94, 421, 1016, 1453, 1572, 1600
LweI GCATC 3 cut(s) 153, 599, 1191
MaeI CTAG 5 cut(s) 171, 305, 402, 944, 1325
MaeII ACGT 3 cut(s) 100, 501, 1284
MaeIII GTNAC 3 cut(s) 634, 953, 1330
MalI GATC 9 cut(s) 6, 78, 157, 228, 627, 689, 781, 922, 1323
MbiI CCGCTC 1 cut(s) 44
MboI GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
MfeI CAATTG 2 cut(s) 27, 111
MflI RGATCY 3 cut(s) 4, 625, 920
MhlI GDGCHC 3 cut(s) 1139, 1361, 1649
MlsI TGGCCA 2 cut(s) 282, 966
MluNI TGGCCA 2 cut(s) 282, 966
MlyI GAGTC 2 cut(s) 1138, 1562
MmeI TCCRAC 2 cut(s) 1374, 1444
Mox20I TGGCCA 2 cut(s) 282, 966
MscI TGGCCA 2 cut(s) 282, 966
MseI TTAA 2 cut(s) 1458, 1548
MslI CAYNNNNRTG 2 cut(s) 1194, 1196
Msp20I TGGCCA 2 cut(s) 282, 966
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 5 cut(s) 444, 657, 1412, 1637, 1658
MspR9I CCNGG 2 cut(s) 788, 1659
MunI CAATTG 2 cut(s) 27, 111
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 788
MwoI GCNNNNNNNGC 4 cut(s) 17, 116, 440, 1387
NciI CCSGG 1 cut(s) 1659
NcoI CCATGG 2 cut(s) 949, 1310
NdeII GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
NlaIII CATG 7 cut(s) 227, 325, 565, 698, 953, 1314, 1373
NlaIV GGNNCC 2 cut(s) 1227, 1275
NmuCI GTSAC 3 cut(s) 634, 953, 1330
NspV TTCGAA 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 1196
PaeR7I CTCGAG 1 cut(s) 1026
PagI TCATGA 2 cut(s) 694, 1369
PaqCI CACCTGC 1 cut(s) 1495
PciSI GCTCTTC 1 cut(s) 1654
PcsI WCGNNNNNNNCGW 1 cut(s) 1640
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 1393
PinAI ACCGGT 1 cut(s) 1411
PkrI GCNGC 9 cut(s) 13, 43, 109, 436, 1006, 1159, 1443, 1587, 1590
PleI GAGTC 2 cut(s) 1138, 1562
PpsI GAGTC 2 cut(s) 1138, 1562
PsiI TTATAA 1 cut(s) 1221
Psp124BI GAGCTC 1 cut(s) 1649
Psp1406I AACGTT 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 786
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 2 cut(s) 1227, 1275
PspPI GGNCC 3 cut(s) 325, 532, 1176
PstI CTGCAG 1 cut(s) 1590
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 3 cut(s) 4, 625, 920
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 5 cut(s) 344, 500, 856, 897, 1416
RsaNI GTAC 5 cut(s) 343, 499, 855, 896, 1415
RseI CAYNNNNRTG 2 cut(s) 1194, 1196
SacI GAGCTC 1 cut(s) 1649
SapI GCTCTTC 1 cut(s) 1654
SaqAI TTAA 2 cut(s) 1458, 1548
SatI GCNGC 9 cut(s) 12, 42, 108, 435, 1005, 1158, 1442, 1586, 1589
Sau3AI GATC 9 cut(s) 4, 76, 155, 226, 625, 687, 779, 920, 1321
Sau96I GGNCC 3 cut(s) 325, 532, 1176
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 2 cut(s) 1138, 1562
ScrFI CCNGG 2 cut(s) 788, 1659
SduI GDGCHC 3 cut(s) 1139, 1361, 1649
SfaNI GCATC 3 cut(s) 153, 599, 1191
SfcI CTRYAG 2 cut(s) 1586, 1621
Sfr274I CTCGAG 1 cut(s) 1026
SfuI TTCGAA 1 cut(s) 199
SinI GGWCC 3 cut(s) 325, 532, 1176
SlaI CTCGAG 1 cut(s) 1026
SmiMI CAYNNNNRTG 2 cut(s) 1194, 1196
SmlI CTYRAG 2 cut(s) 59, 1026
SmoI CTYRAG 2 cut(s) 59, 1026
SsiI CCGC 4 cut(s) 42, 370, 1124, 1157
SspMI CTAG 5 cut(s) 171, 305, 402, 944, 1325
SstI GAGCTC 1 cut(s) 1649
StyD4I CCNGG 2 cut(s) 786, 1657
StyI CCWWGG 3 cut(s) 15, 949, 1310
TaaI ACNGT 4 cut(s) 568, 769, 1258, 1625
TaiI ACGT 3 cut(s) 103, 504, 1287
TaqI TCGA 5 cut(s) 199, 361, 910, 1027, 1152
TatI WGTACW 2 cut(s) 854, 895
TauI GCSGC 2 cut(s) 44, 1160
TfiI GAWTC 1 cut(s) 1393
Tru1I TTAA 2 cut(s) 1458, 1548
Tru9I TTAA 2 cut(s) 1458, 1548
TscAI CASTG 2 cut(s) 249, 542
TseFI GTSAC 3 cut(s) 634, 953, 1330
TseI GCWGC 7 cut(s) 11, 107, 434, 1004, 1441, 1585, 1588
Tsp45I GTSAC 3 cut(s) 634, 953, 1330
TspRI CASTG 2 cut(s) 249, 542
VneI GTGCAC 1 cut(s) 1135
VpaK11BI GGWCC 3 cut(s) 325, 532, 1176
XapI RAATTY 4 cut(s) 596, 800, 1062, 1107
XbaI TCTAGA 2 cut(s) 304, 1324
XhoI CTCGAG 1 cut(s) 1026
XspI CTAG 5 cut(s) 171, 305, 402, 944, 1325
ZrmI AGTACT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.